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MCL coexpression mm9:171: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=GO:0030336;negative regulation of cell migration;0.0312123450890945;17831!GO:0051271;negative regulation of cell motility;0.0312123450890945;17831!GO:0040013;negative regulation of locomotion;0.0312123450890945;17831!GO:0016324;apical plasma membrane;0.0443008963104711;666339!GO:0030334;regulation of cell migration;0.0443008963104711;17831!GO:0051270;regulation of cell motility;0.0443008963104711;17831!GO:0040012;regulation of locomotion;0.0443008963104711;17831!GO:0045177;apical part of cell;0.0473591463876517;666339!
|ontology_enrichment_celltype=
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0000160!5.67e-43!31;UBERON:0005409!6.13e-30!47;UBERON:0002108!1.58e-13!4;UBERON:0000344!7.80e-13!15;UBERON:0001007!5.78e-12!116;UBERON:0001555!5.78e-12!116;UBERON:0007026!5.78e-12!116;UBERON:0004119!1.11e-11!118;UBERON:0000925!1.11e-11!118;UBERON:0006595!1.11e-11!118;UBERON:0000331!1.88e-10!3;UBERON:0002116!1.88e-10!3;UBERON:0001204!1.88e-10!3;UBERON:0001168!1.88e-10!3;UBERON:0004921!8.63e-10!114;UBERON:0001242!1.41e-08!13;UBERON:0000060!1.41e-08!13;UBERON:0001262!1.41e-08!13;UBERON:0004786!1.41e-08!13;UBERON:0001155!4.64e-08!2;UBERON:0000059!4.64e-08!2;UBERON:0004923!1.45e-07!24;UBERON:0001962!1.96e-07!2;UBERON:0001961!1.96e-07!2;UBERON:0001744!1.96e-07!2
}}

Latest revision as of 14:49, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:18509279..18509280,-p@chr10:18509279..18509280
-
Mm9::chr10:36880302..36880309,-p@chr10:36880302..36880309
-
Mm9::chr13:101003290..101003295,-p@chr13:101003290..101003295
-
Mm9::chr13:113823247..113823262,+p@chr13:113823247..113823262
+
Mm9::chr17:57071122..57071131,+p@chr17:57071122..57071131
+
Mm9::chr1:132748181..132748201,+p@chr1:132748181..132748201
+
Mm9::chr1:189023354..189023373,-p@chr1:189023354..189023373
-
Mm9::chr1:189023575..189023594,-p@chr1:189023575..189023594
-
Mm9::chr2:125061588..125061590,+p@chr2:125061588..125061590
+
Mm9::chr2:167369128..167369134,-p@chr2:167369128..167369134
-
Mm9::chr3:3512957..3512961,+p@chr3:3512957..3512961
+
Mm9::chr3:72707564..72707600,-p@chr3:72707564..72707600
-
Mm9::chr3:72708349..72708381,-p@chr3:72708349..72708381
-
Mm9::chr5:113642392..113642425,-p@chr5:113642392..113642425
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Mm9::chr5:137619882..137619892,-p@chr5:137619882..137619892
-
Mm9::chr5:137622567..137622577,-p@chr5:137622567..137622577
-
Mm9::chr5:33504792..33504803,+p@chr5:33504792..33504803
+
Mm9::chr7:148877290..148877298,-p@chr7:148877290..148877298
-
Mm9::chr7:148878592..148878602,-p@chr7:148878592..148878602
-
Mm9::chr7:148879900..148879912,-p@chr7:148879900..148879912
-
Mm9::chr7:148881250..148881267,+p@chr7:148881250..148881267
+
Mm9::chr7:148883092..148883100,+p@chr7:148883092..148883100
+
Mm9::chr7:148884610..148884624,+p1@ENSMUST00000167366
Mm9::chr7:148886406..148886417,+p@chr7:148886406..148886417
+
Mm9::chr7:148887237..148887250,+p@chr7:148887237..148887250
+
Mm9::chr7:148887264..148887276,+p@chr7:148887264..148887276
+
Mm9::chr7:148887306..148887317,+p@chr7:148887306..148887317
+
Mm9::chr7:148888479..148888500,+p@chr7:148888479..148888500
+
Mm9::chr7:148888506..148888517,+p@chr7:148888506..148888517
+
Mm9::chr7:148888523..148888536,+p@chr7:148888523..148888536
+
Mm9::chr7:148888551..148888653,+p@chr7:148888551..148888653
+
Mm9::chr7:148888671..148888688,-p@chr7:148888671..148888688
-
Mm9::chr7:148890176..148890187,+p@chr7:148890176..148890187
+
Mm9::chr7:148890208..148890231,+p@chr7:148890208..148890231
+
Mm9::chr7:148890247..148890260,+p@chr7:148890247..148890260
+
Mm9::chr7:148890284..148890311,+p@chr7:148890284..148890311
+
Mm9::chr7:148890294..148890307,-p@chr7:148890294..148890307
-
Mm9::chr7:148890317..148890367,+p@chr7:148890317..148890367
+
Mm9::chr7:148890369..148890437,+p@chr7:148890369..148890437
+
Mm9::chr7:148890439..148890478,+p@chr7:148890439..148890478
+
Mm9::chr7:148890458..148890478,-p@chr7:148890458..148890478
-
Mm9::chr7:148890483..148890505,-p@chr7:148890483..148890505
-
Mm9::chr7:148930524..148930544,+p@chr7:148930524..148930544
+
Mm9::chr7:148930554..148930569,+p@chr7:148930554..148930569
+
Mm9::chr7:148930582..148930596,+p@chr7:148930582..148930596
+
Mm9::chr7:148930615..148930626,-p@chr7:148930615..148930626
-
Mm9::chr7:148930629..148930659,+p@chr7:148930629..148930659
+
Mm9::chr7:148931345..148931363,+p@chr7:148931345..148931363
+
Mm9::chr7:148931370..148931399,+p@chr7:148931370..148931399
+
Mm9::chr7:148931425..148931441,+p@chr7:148931425..148931441
+
Mm9::chr7:148932537..148932547,+p@chr7:148932537..148932547
+
Mm9::chr7:148932608..148932622,+p@chr7:148932608..148932622
+
Mm9::chr7:148932641..148932653,+p@chr7:148932641..148932653
+
Mm9::chr7:148935432..148935444,+p@chr7:148935432..148935444
+
Mm9::chr7:148935827..148935838,+p@chr7:148935827..148935838
+
Mm9::chr7:148937299..148937310,+p@chr7:148937299..148937310
+
Mm9::chr7:148937360..148937372,+p@chr7:148937360..148937372
+
Mm9::chr7:148939272..148939288,+p@chr7:148939272..148939288
+
Mm9::chr7:30032745..30032764,-p@chr7:30032745..30032764
-
Mm9::chr7:30032963..30032991,-p@chr7:30032963..30032991
-
Mm9::chr8:106558220..106558221,-p@chr8:106558220..106558221
-
Mm9::chr8:91178097..91178100,-p@chr8:91178097..91178100
-
Mm9::chr9:120215155..120215167,-p@chr9:120215155..120215167
-
Mm9::chrX:160595852..160595866,+p@chrX:160595852..160595866
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030336negative regulation of cell migration0.0312123450890945
GO:0051271negative regulation of cell motility0.0312123450890945
GO:0040013negative regulation of locomotion0.0312123450890945
GO:0016324apical plasma membrane0.0443008963104711
GO:0030334regulation of cell migration0.0443008963104711
GO:0051270regulation of cell motility0.0443008963104711
GO:0040012regulation of locomotion0.0443008963104711
GO:0045177apical part of cell0.0473591463876517



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.15.79262e-08
MA0004.10.0552266
MA0006.10.000951721
MA0007.10.274102
MA0009.10.491483
MA0014.16.21022e-12
MA0017.10.0366997
MA0019.10.261333
MA0024.10.139449
MA0025.10.851061
MA0027.11.61906
MA0028.10.00116621
MA0029.10.801353
MA0030.10.411091
MA0031.10.113739
MA0038.10.351294
MA0040.10.170763
MA0041.10.0783959
MA0042.10.690604
MA0043.10.222589
MA0046.10.184599
MA0048.10.058567
MA0050.10.076016
MA0051.10.160187
MA0052.10.175475
MA0055.18.041e-05
MA0056.10
MA0057.10.0224737
MA0058.10.0201642
MA0059.10.0234518
MA0060.10.00125778
MA0061.10.136872
MA0063.10
MA0066.10.333259
MA0067.10.402594
MA0068.10.025451
MA0069.10.175674
MA0070.10.507345
MA0071.10.62731
MA0072.10.165124
MA0073.10.153094
MA0074.10.277278
MA0076.10.00218277
MA0077.10.152921
MA0078.10.743844
MA0081.10.197041
MA0083.10.632276
MA0084.10.682441
MA0087.10.194867
MA0088.10.000658015
MA0089.10
MA0090.10.239857
MA0091.10.0618284
MA0092.10.114554
MA0093.10.00930238
MA0095.10
MA0098.10
MA0100.10.106734
MA0101.10.0260546
MA0103.10.998986
MA0105.10.0795363
MA0106.10.197856
MA0107.10.0389759
MA0108.20.0846214
MA0109.10
MA0111.10.128226
MA0113.10.387793
MA0114.10.132795
MA0115.10.224406
MA0116.10.135629
MA0117.10.203817
MA0119.10.0262319
MA0122.10.216388
MA0124.10.361018
MA0125.10.305575
MA0130.10
MA0131.10.0736573
MA0132.10
MA0133.10
MA0135.13.63216
MA0136.10.563217
MA0139.10.000524854
MA0140.10.486806
MA0141.10.237377
MA0142.10.347016
MA0143.10.41649
MA0144.10.0109665
MA0145.10.254264
MA0146.11.10854e-06
MA0147.10.0137632
MA0148.10.0634446
MA0149.10.00492975
MA0062.21.28739e-05
MA0035.20.266925
MA0039.21.29347e-11
MA0138.20.0706291
MA0002.20.175582
MA0137.20.015666
MA0104.20.0135687
MA0047.20.151796
MA0112.20.0496736
MA0065.20.345126
MA0150.10.00955104
MA0151.10
MA0152.10.0386926
MA0153.10.257975
MA0154.10.147332
MA0155.10.0123347
MA0156.10.0137588
MA0157.10.308259
MA0158.10
MA0159.10.296951
MA0160.10.858704
MA0161.10
MA0162.11.94351e-07
MA0163.12.01301e-06
MA0164.10.308322
MA0080.20.0394207
MA0018.20.588433
MA0099.20.24102
MA0079.20
MA0102.20.729967
MA0258.10.191866
MA0259.10.000327908
MA0442.10
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