FFCP PHASE1:Hg19::chr10:70320074..70320106,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=80312 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=29484 | |||
|TSSclassifier=strong | |||
|UniProt=Q8NFU7 | |||
|association_with_transcript=-10bp_to_NM_030625,uc001jok.3_5end | |||
|coexpression_cluster_id=C45 | |||
|description=CAGE_peak_1_at_TET1_5end | |||
|id=chr10:70320074..70320106,+ | |||
|ontology_enrichment_celltype=CL:0000133!1.13e-11!59;CL:0000333!2.08e-08!41;CL:0000055!3.26e-08!180;CL:0000221!1.30e-07!71;CL:0002319!1.42e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.09e-07;25!CL:0002321;1.94e-07;15!CL:0000039;5.66e-07;7!CL:0000586;5.66e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000133,4.47e-12,59;CL:0000333,3.53e-08,41;CL:0002319,1.39e-07,25;CL:0000221,1.79e-07,72;CL:0000039,6.00e-07,7;CL:0000586,6.00e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0003104;3.40e-07;31 | |||
|ontology_enrichment_disease=DOID:3095!4.29e-13!22;DOID:2994!4.29e-13!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;8.81e-14;22!DOID:2994;8.81e-14;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,8.43e-14,22;DOID:2994,8.43e-14,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.70e-15!94;UBERON:0001016!3.70e-15!94;UBERON:0001017!2.28e-14!82;UBERON:0005743!7.19e-14!86;UBERON:0000924!7.34e-14!173;UBERON:0006601!7.34e-14!173;UBERON:0000475!8.28e-14!365;UBERON:0004121!2.04e-12!169;UBERON:0000481!6.25e-12!347;UBERON:0000955!1.22e-10!69;UBERON:0006238!1.22e-10!69;UBERON:0002346!1.05e-09!90;UBERON:0000033!2.60e-09!123;UBERON:0000153!2.60e-09!129;UBERON:0007811!2.60e-09!129;UBERON:0002616!2.44e-08!59;UBERON:0003075!2.99e-08!86;UBERON:0007284!2.99e-08!86;UBERON:0001049!6.04e-08!57;UBERON:0005068!6.04e-08!57;UBERON:0006241!6.04e-08!57;UBERON:0007135!6.04e-08!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;5.79e-13;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.51e-15,89;UBERON:0011216,8.55e-14,223;UBERON:0001017,9.38e-14,81;UBERON:0004121,3.04e-11,171;UBERON:0000924,3.04e-11,171;UBERON:0006601,3.04e-11,171;UBERON:0000955,5.33e-10,68;UBERON:0006238,5.33e-10,68;UBERON:0002346,7.62e-08,86;UBERON:0001049,3.95e-07,56;UBERON:0005068,3.95e-07,56;UBERON:0006241,3.95e-07,56;UBERON:0007135,3.95e-07,56 | |||
|phase1_expression=0.908391896352783,1.07050261945492,1.12763523276777,2.00146596706261,1.34088328328186,0.872338524100369,0,0,2.87304191019822,1.22866968250754,0.697801167972428,2.40285509343189,1.58260186937072,1.48519623552056,2.31978163009541,0,0,0,0,2.58554221961255,1.02000345622126,5.01527554364941,6.01095572975219,3.69560947696787,4.14290710662849,0.0764134057479513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889509253863555,0,0,0.574752439954483,0,0,0,0,0.382273228125229,0,0.560508562981536,1.05353633910031,0,0,0,0,0,0,0,0,0,0,0,0,0,0.493313713811028,0,0,0,0,0,0,0,0,0,0,0,0.950452044448374,0,0.255973222308837,0,0,0,0.201606743224732,0,0,0,2.01210257911091,4.73091478821062,0.361439152384566,0.50133791063589,0.434539556882471,4.7717156823066,6.32625331393427,3.21418378357831,2.4390233720882,3.68906099911129,1.44076983047484,0,0,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0,0,0.775250277507987,1.06729878806013,1.00416183829401,0,0,0.24406205754817,0,0,0.446498641420399,0.44905874525234,0.788280363383256,0,0,0,0,0,0.872188104285069,5.4666914686485,1.13967460498122,0.926864265692532,5.44989579422746,1.06400514659507,1.68203280042692,0,0.74000264525148,8.71390899119346,1.34710672069688,3.26923806226917,6.05429710579726,3.45705554687999,2.10889288650417,0.936480230490962,1.1409436430889,0.896692083310806,2.93586246609412,2.10434827678571,3.23036855415172,0.816616685019573,2.94802361548243,1.96318984233954,0,0,2.73048408581408,0.718618141816238,2.35670559535693,5.12985931475053,0.554128230968366,0.438977620880838,0,0.901428353439581,0.907457465280168,5.56107870635472,3.20336083227851,1.90738711043606,2.40072876867522,1.23663035086127,5.92573242104947,1.48893485065272,4.55696097051419,1.16924406193438,10.6022185182528,2.66944706062668,2.7479829659198,6.39017266529906,0.705264687593482,1.52604533079439,0.773043412653187,2.45471508531751,0.286804595389004,32.6889532427316,33.3975016170143,27.3055765743368,26.1225858638734,39.362052736598,33.2129396759005,3.12899064659632,1.28648187638577,4.14404764057442,0.464367928031979,0,0,0,0,0,0,0,0,0,0,2.21446636387394,1.40241773803446,3.2925920906512,1.47008711385542,0,0.982827216677626,1.77236972004421,0.441463099414651,7.87126006675927,1.20097467208968,0.329250856225877,0,0.100528972411631,5.18495292887766,0.977424915930974,0,1.44331342025273,2.66639931442677,0.821860859650752,0,0,0.190254152234598,0,0,0,0,0,0,0.16798212819886,0.708875486211932,0,0,0.383382679165211,0,0,2.48793738648926,1.29707958075265,0.75745460055828,2.73040945456327,3.4378958300245,3.51652341630141,3.4214489204541,2.15937734676979,3.60411669412701,4.0015700568281,3.92458795208763,1.74384027533312,2.2001485746285,1.68053230485111,0,3.381211010224,1.32969058292435,3.12022310734098,0.771622122786426,0,1.0656887160644,4.28933980974443,4.88359444852299,3.29296134712308,0.65147236858747,3.55391948742546,0.791951872933429,0,0,0.299918973546171,0,0,0,0.958499421966331,2.29723871668228,7.13184525203592,0.144781306667579,3.49309748335652,1.25342674267927,0,0,0,0,5.33598710867173,13.0139853857622,6.18631050222156,2.17771144934653,2.55175500661265,0,0,0,2.20844685094452,1.50051156317903,0.813795071099207,7.07100929204744,3.21172179834891,2.36553622550902,3.04567678981054,2.10662269809403,0,2.0694614258501,4.64957918974806,1.29058417979192,1.56390506042549,1.95801157462741,1.71571711905428,0,0,0.106727557803444,0,0,0,0.248107807818777,2.60885354589706,0,1.02511319404561,0.511707249066704,1.12597744800525,0,0.925258162815933,1.06537035187876,1.06765302817952,1.03850885836724,0.232420756919918,8.09758312263869,0.200506470303285,0,0.34444334449382,0,0.786746489756545,1.80479845162965,0.539107359730903,2.35304930753057,1.46139224653261,0.633309773357254,2.27466768141793,0.850468526382578,0.647747748306418,1.54227252690289,0.541892875087706,0,0.254876273045038,1.66215201785745,1.34324852833307,0,0,0.769350375349168,0,0.976135183992909,1.854738209659,1.09883357782012,2.0627374980147,0,0,0,2.32009723901093,2.92692372517824,4.60511024178389,3.72158745708233,4.51165028446749,3.77043404176994,3.49429172406014,3.73934549716297,0,0,0,0,1.85938219718914,1.5740617341532,3.485186350803,0,0,1.73986598415015,0,0.429374660225974,2.97726695487734,5.37845022021834,1.33441135746677,1.535386747868,5.56320684444097,1.59101623962968,1.56989728039846,2.15846949099978,3.56898138656871,2.35624804691373,0,0,0,2.92580243453754,0,0,1.9109987597118,0,1.13008116620243,2.2054613741845,0,0,1.15755106853338,7.87073702455959,0.405820753925408,1.239293992399,2.53526042279017,2.86822704408103,2.65272410735427,0.7133421029625,0.709522128141196,0.844430541190656,0.329294892959902,4.9331512589543,4.89908608342976,0,0,0,1.88287601553558,0,0,0,0.229723400206959,0,0,0,0.238231775457789,0,0,0,0,8.97322197470774,33.6867949342176,0.735120647943095,2.04383492638291,0,3.20138295067864,3.34795172730527,0,0.191505370132367,0.211673582723883,25.3205113414153,0,0,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| |||
|short_description=p1@TET1 | |||
}} |
Revision as of 03:12, 11 January 2014
Short description: | p1@TET1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TET1_5end |
Coexpression cluster: | C45_testicular_choriocarcinoma_H9_teratocarcinoma_Wilms_pancreatic_iPS |
Association with transcript: | -10bp_to_NM_030625, uc001jok.3_5end |
EntrezGene: | TET1 |
HGNC: | 29484 |
UniProt: | Q8NFU7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectodermal cell | 4.47e-12 | 59 |
migratory neural crest cell | 3.53e-08 | 41 |
neural cell | 1.39e-07 | 25 |
ectodermal cell | 1.79e-07 | 72 |
germ line cell | 6.00e-07 | 7 |
germ cell | 6.00e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.51e-15 | 89 |
organ system subdivision | 8.55e-14 | 223 |
central nervous system | 9.38e-14 | 81 |
ectoderm-derived structure | 3.04e-11 | 171 |
ectoderm | 3.04e-11 | 171 |
presumptive ectoderm | 3.04e-11 | 171 |
brain | 5.33e-10 | 68 |
future brain | 5.33e-10 | 68 |
neurectoderm | 7.62e-08 | 86 |
neural tube | 3.95e-07 | 56 |
neural rod | 3.95e-07 | 56 |
future spinal cord | 3.95e-07 | 56 |
neural keel | 3.95e-07 | 56 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 8.43e-14 | 22 |
germ cell cancer | 8.43e-14 | 22 |