FFCP PHASE1:Hg19::chr12:6875519..6875536,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5763 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9629 | |||
|TSSclassifier=strong | |||
|UniProt=F5GXR3,P20962 | |||
|association_with_transcript=-4bp_to_ENST00000389462,NM_002824,uc001qqq.2_5end | |||
|coexpression_cluster_id=C3321 | |||
|description=CAGE_peak_1_at_PTMS_5end | |||
|id=chr12:6875519..6875536,+ | |||
|ontology_enrichment_celltype=CL:0002321!2.08e-22!248;CL:0000220!5.42e-22!246;CL:0000055!1.19e-18!180;CL:0000066!2.02e-14!254;CL:0000222!4.17e-11!119;CL:0000221!6.12e-10!71;CL:0000133!7.82e-10!59;CL:0000057!1.19e-09!75;CL:0000213!6.70e-08!57;CL:0000215!6.70e-08!57;CL:0000071!2.49e-07!18;CL:0002546!2.49e-07!18;CL:0000115!4.21e-07!35 | |||
|ontology_enrichment_celltype_v019=CL:0000071;2.51e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,7.28e-23,250;CL:0000066,3.29e-14,253;CL:0000222,1.79e-11,121;CL:0000221,3.55e-10,72;CL:0000133,7.82e-10,59;CL:0000057,1.54e-09,76;CL:0000213,4.75e-08,58;CL:0000215,4.75e-08,58;CL:0000071,2.49e-07,18;CL:0002546,2.49e-07,18;CL:0000115,3.00e-07,36;CL:0002078,9.24e-07,45 | |||
|ontology_enrichment_development_v019=CL:0002546;2.51e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!8.38e-14!312;UBERON:0000475!1.29e-13!365;UBERON:0000481!1.53e-13!347;UBERON:0000483!4.48e-13!309;UBERON:0000468!3.77e-12!659;UBERON:0000477!3.40e-10!286;UBERON:0002100!4.52e-10!216;UBERON:0003914!8.48e-10!118;UBERON:0003104!6.04e-09!238;UBERON:0009142!6.04e-09!238;UBERON:0000490!8.65e-09!138;UBERON:0005256!1.33e-08!143;UBERON:0002049!2.00e-08!79;UBERON:0007798!2.00e-08!79;UBERON:0000922!3.01e-08!612;UBERON:0000025!3.47e-08!194;UBERON:0000467!4.86e-08!625;UBERON:0000480!6.40e-08!626;UBERON:0001048!1.40e-07!168;UBERON:0009569!1.52e-07!113;UBERON:0001986!2.49e-07!18;UBERON:0004638!2.49e-07!18;UBERON:0004852!2.49e-07!18;UBERON:0000064!2.55e-07!219;UBERON:0002050!3.36e-07!605;UBERON:0005423!3.36e-07!605;UBERON:0004111!4.34e-07!241;UBERON:0000923!5.13e-07!604;UBERON:0005291!5.13e-07!604;UBERON:0006598!5.13e-07!604;UBERON:0002532!5.13e-07!604;UBERON:0000487!6.83e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0000490;2.72e-08;33!UBERON:0004638;2.51e-07;18!UBERON:0001986;2.51e-07;18!UBERON:0004852;2.51e-07;18!UBERON:0000487;6.86e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,1.12e-13,309;UBERON:0000483,5.93e-13,306;UBERON:0000490,5.68e-10,148;UBERON:0003914,1.35e-09,117;UBERON:0002100,5.97e-09,199;UBERON:0003104,1.14e-08,160;UBERON:0009142,1.14e-08,160;UBERON:0002049,1.61e-08,78;UBERON:0007798,1.61e-08,78;UBERON:0001048,5.18e-08,160;UBERON:0000025,8.60e-08,192;UBERON:0009569,2.37e-07,112;UBERON:0004638,2.49e-07,18;UBERON:0001986,2.49e-07,18;UBERON:0004852,2.49e-07,18;UBERON:0005256,4.78e-07,122;UBERON:0000922,5.40e-07,592;UBERON:0000487,6.83e-07,22;UBERON:0004111,6.95e-07,240;UBERON:0007503,9.46e-07,78 | |||
|phase1_expression=446.020421109216,556.875462640447,409.190635090604,547.400941991623,485.846709642462,354.16944078475,856.15358820889,258.373428231574,348.421628018585,379.41319795833,794.097729152622,403.461214324428,705.576666761113,547.171046436366,451.031828365693,315.320493685883,320.633488908756,343.976052572453,466.463755643725,972.533237748548,1281.12434101391,1520.25539916873,695.553448728468,723.518210935266,980.613557875005,69.3069590133918,68.143489243455,64.0705759893349,15.7345710739562,11.5148819429164,107.442389581357,439.483345300927,588.857571211479,488.814801440493,37.494125080866,0,40.5168606282089,10.5259127621057,15.0408335602606,6.2933152507597,76.5790921900541,74.4955431843653,82.6817572105739,4.21654892460738,6.42389104270976,7.03493777444667,5.81072592264212,12.7462045286766,9.91060386864331,6.32923263108731,7.68482119587302,7.80391358632331,4.13694816883942,7.74581620300591,4.06279459783025,5.83551252582075,4.91231070104122,5.39336362668203,5.50951006267625,7.70229664982625,9.59005688698562,4.61791820261403,4.9865914405408,4.68847225585964,7.83564944297177,9.07816359505824,9.34233373493363,6.78371396193207,7.30076085788282,8.03598725408932,136.820287595141,6.2607198117886,5.06339819905415,8.45021145247767,5.74031609905618,7.54771123830153,8.87396186057311,10.0618518203809,5.30394436100364,1.42506371870624,2.18808344918999,0.730656615058536,0,1.09227722252426,0.889509253863555,1.28019066769952,1.20118796110804,1.14950487990897,2.64417949113945,3.81621501814146,0.569212969109448,2.93618594685469,3.05818582500183,48.9033915742396,22.980851082243,32.6596265121096,3.14735632182133,3.14408610199332,8.01845846098086,5.51715434789238,0.651844533267181,0.473447805734733,0,51.8058624516057,12.3734481139432,15.0643048316862,9.74893909554056,85.949275535928,48.121958597155,34.2030841575646,21.0026013517245,19.7066098299836,0.444859689486181,1.60524496853828,1.04535523804977,13.7104304664055,8.81407135284419,9.27794102803101,6.57851199250707,15.6097053018807,22.1368374311182,35.1667256445898,15.9609626222439,17.5341657281553,22.4875307794223,25.5719432207538,42.6986558398944,25.4024496463163,39.3137087801756,13.7583183688659,950.846778624451,620.398295225863,570.394888383989,391.438602032485,534.426212737858,469.302721433069,352.311674543637,308.526507771871,751.551796454339,817.738017841936,966.446146981466,225.545968007061,604.001587989035,446.424469112453,54.1994147403321,48.4080669691963,85.3590106531114,92.057380981862,134.99079894411,92.4929178310617,644.984011904958,873.138114032716,989.697570083251,909.015170613808,992.535666072637,688.895577017929,555.926610987916,276.764349070351,287.103373988175,306.604081292438,834.662345050153,488.854963977004,1113.6551685923,398.546779094922,981.892040832693,343.446754980571,563.793254664312,573.417658621077,996.558143528241,811.62213893075,634.06123574314,13.1780417436063,11.6334079244498,807.210090515831,555.117670043671,506.775307681648,115.59321484994,241.229598049752,608.965612234579,814.664553006772,900.96152395871,1055.73710722544,473.974406913844,373.822114993384,469.952971451194,945.832565353176,914.967368074238,944.3153702902,319.339758597418,357.68583210837,268.110932909931,473.49589853166,389.142558260988,368.964269206807,333.383761659241,445.765737524406,462.899499667429,349.272840040924,479.6978428004,1055.78717984811,1716.77874079899,400.134942868815,592.43619159375,368.218209478479,899.465145184837,515.205984738152,442.751559597741,449.078013130523,360.752557370301,496.307371614351,463.071204033643,437.232726994974,506.915391323881,379.504515487212,672.998552495029,310.379674991689,583.842534925902,411.971919566395,506.274442532646,427.877112399395,541.744638180353,680.681175625938,879.68035290681,223.796067963098,252.290161546522,264.433836948662,448.985212263041,579.420147101534,518.108791255182,608.490392940224,429.197767339444,485.419887570854,772.860689709291,1107.66089556815,1109.22341846042,465.296663888043,578.225464817338,579.939933795315,716.65351752201,636.510129922276,578.381593008674,705.929398859396,626.868975691517,614.291439977709,771.739022337986,671.383788871451,755.87118553564,1328.08959791863,1088.20168596022,1486.25807210783,1528.66571995128,915.994965943547,703.630778857552,27.3707121637083,454.565268855348,441.615543708405,352.078915590871,501.311819528983,290.528730269613,263.2289495857,478.286592195557,1043.05458963542,802.482261660519,823.917388157871,639.759974890992,341.715381850462,329.645684954547,230.397778356098,577.63941490823,569.1763254689,98.9792364471337,66.4572112995435,141.645497661158,356.188569149753,474.381530033579,310.629238058069,269.481594812871,317.081626918732,626.447297755955,9.85326475791887,77.3065250636125,77.1260589811672,67.8804980593888,55.6729131410336,222.179132128299,621.877156808876,740.814266367497,822.858465369212,260.256384032112,280.820759084063,339.561801965127,694.988460772546,854.917694982062,505.740819021271,213.815417863364,4070.13035379442,401.5188074641,1010.03296678934,1644.3575775687,621.92743096586,645.413550705916,626.624965045866,302.970368561615,409.679312070539,986.241923463361,241.370512561658,317.365010227093,473.587220014191,135.346280299754,278.019173293494,368.200526523516,211.625378315671,202.409607847147,160.233794007104,555.210790173997,1214.09066176658,1446.33821711288,274.794920055065,423.075748131239,537.541011646167,91.5735626427118,14.3832454947407,41.4004943730273,12.4492745191356,432.977239675078,963.034918546401,1296.8053390282,1251.17898578225,1353.70603100801,12.7331194071021,8.97484377612075,11.189218862773,210.170525314887,658.724576235595,420.46078673459,1140.51220463495,1116.07332492625,1096.97799897605,811.790005899502,420.120755219896,491.200208760927,546.337816424426,646.955732973515,718.302280638476,399.751510167649,1493.37542796832,1123.79471298055,5.99627275756373,5.1771408196468,23.6935178323646,392.853332594352,1013.59182661893,789.843446177125,317.081778392397,312.908963534359,455.511333264878,274.2177794072,464.1184749035,422.402396923113,436.349115348273,301.171531996586,420.643727266798,281.449763659324,319.341473947927,287.155845174559,301.665186180689,213.138377932392,301.933562720804,299.780524157788,378.749629453971,375.409200028831,547.756330069598,231.739149347184,1044.75389254357,584.556898613043,270.317721594655,880.29639270874,496.333431996873,441.332132512773,1883.11475534843,817.987294944892,1331.48465981078,222.761862641363,267.606474875049,558.343638277113,128.92480746781,165.227205047737,170.282883077282,361.800154206775,160.411548569501,846.378869674391,260.515127408187,183.336108823547,379.015255077474,349.082352121612,321.367859688319,501.624357217821,388.510612363133,440.709050138718,285.321705042978,527.755663037828,680.128294457732,411.559383792351,562.237305109146,213.052255900301,453.18417884692,159.898728755714,491.930288300539,528.529389551014,128.758249853732,262.783050850546,561.54521666101,312.463639796092,277.508624471948,567.092110457995,129.671147388244,445.845726492881,458.750165842153,377.066523581326,890.780211554753,566.591220156911,347.796149983049,494.517643325515,289.77452916672,353.054620240566,329.167852153848,324.705065406746,278.978165264495,173.55848397046,1104.97805277701,128.924436014949,333.854463751347,372.917757966617,322.262979422511,463.333278142995,577.830880036338,274.000296774624,207.825719610284,615.817168459756,651.303488782306,412.71970674214,530.108005248672,735.507218211682,463.505490323494,522.193652984739,381.638025084938,584.291472524275,287.106384004823,227.872065928252,1056.45331576375,1315.05467868065,264.610809995158,741.354316742581,437.741759142517,862.26307131452,397.786964348216,453.188269545913,738.311205638565,232.250357609236,118.235292951095,107.813846207075,142.981443980715,55.5080036816648,45.6612123125676,88.8408436334023,92.8854072049557,153.866284201088,861.749781785326,1723.80142077668,272.484720170907,10.9623873324174,3.46246111143468,26.0379146655196,58.6688683642066,3.19326994292507,46.9188156824298,32.3860581567541,66.5474977562839,9.82790123397106,18.0305396436222,3.60363760277953,80.2030326688215,41.9843608947976,12.0441056327775,8.67738740921505,47.2689323836262,264.155610117183,22.4285757945174,35.1171489391093,25.1942203984982,73.0751476803631,282.025454155881,30.7718497369281,91.4140193248823,20.317390047867,36.6566213228409,297.553459249069,178.593470532439,834.960389636652,381.805034534641,850.135351244788,153.512703686335,567.796469752005,121.328477329197,549.763649214763,470.539197893165,138.690646458541,103.167225265952,579.116994495086,622.05221931984,225.723958988948,166.527546331676,385.143858303115,40.6179858021529,274.336916317714,193.846033424784,22.7356891838024,10.7430197747643,353.340678991496,165.243333719388,562.353170131863,361.561114293516,166.240431906037,1391.30817206832,624.245343321304,442.022839980773,741.674565669794,445.046176244589,220.692168454121,257.898960808819,341.985426255533,895.517767699974,417.394487819635,390.611951143903,454.407380740537,326.524915718558,371.878051148708,332.786618941694,269.844038499386,138.896540986712,192.125919615915,383.520088382925,106.649764272793,113.206877054538,204.288398676641,296.172735859394,214.36877933985,650.70930352683,197.222867126895,2.04386596391473,30.1402092278448,22.9372121022216,245.222483090875,249.7836687208,227.566071939243,54.4593212918411,6.51639973819553,535.091091643077,245.012445046881,359.178154513644,560.230188292274,567.299300714748,216.897948162188,306.73713275668,18.0877888495179,28.1725780798027,25.7922215278475,67.1315284487543,389.250158939913,264.250294778183,4.56136973039165,138.726214822852,467.837791362197,288.441198482904,347.243355059665,1148.69107439923,209.337138309181,122.81423366164,201.984596841837,325.680397626521,265.786540568026,285.678955750575,301.070523027856,120.959057062662,777.271542238642,363.95477128877,148.85045167244,136.421776711491,212.467628582309,452.495251432823,441.982921328541,372.316981237029,486.534083040265,355.658723463034,603.318882063096,806.751244586501,422.089127911993,326.289392416309,203.101033426459,78.8072072421256,97.7136018866196,258.278123634617,266.745828792144,260.659564631778,410.499160658642,198.878602522017,10.8041098491112,100.271796201304,201.989787666594,218.805771778519,244.038440446673,263.869389025164,246.474853185996,225.157608266171,126.500570096202,17.8845223293761,554.827184873165,78.3404315752357,311.399877418563,224.806375955462,342.42543272314,310.70052477643,220.192962694061,178.76033741094,320.733897651631,308.056400428755,1411.93090827274,342.155360760272,320.350441527594,331.558032218735,340.263803596487,100.337898497955,433.40018094607,326.343361043335,507.819196000996,409.042284440173,431.642511212323,411.927195430797,404.698422233808,266.32605638878,47.2962909514965,376.612475182868,298.099424371194,171.072545161439,124.246126157661,351.780556686543,273.728310001,199.289683079995,1842.68409238397,212.312844285702,235.068245606745,353.040936278271,530.404748621819,94.8168614654865,444.031184772809,724.630825271204,655.381589008385,1287.96696022679,126.180165408873,120.860597992819,538.752452497753,525.087191625921,310.858157984559,283.439362094698,595.26152253392,174.154273655995,144.256491285499,5.48066692714032,104.04962501654,184.422035342252,158.436013022346,87.9211805311135,122.624363885467,350.387688734273,294.174635749039,239.29350547275,232.103985529851,120.989340290605,204.553171033956,100.720365570924,1056.01513046825,253.710228163076,186.376765458685,83.6413427286755,311.021413640983,281.469278389936,693.881884988631,404.779025429202,555.069110887158,305.143223826437,367.063024223123,462.633371322986,222.452805399134,225.178627302573,314.257859580011,609.469263485082,186.445344136928,470.562650201577,193.865141342514,456.007304345574,505.941573565844,388.926428398346,402.265442656847,504.865566230654,210.585282329344,293.353798640561,448.984339571119,565.409172271659,289.093032404302,403.271135251698,584.040536408204,664.127293823521,685.621959127411,407.577221278543,480.779096696629,139.172592802327,904.606215951423,335.524769758163,513.748370524588,614.53386501574,793.900832514234,975.19497013435,517.29107295617,423.700571978223,274.902504536054,751.62491846552,286.478017781324,508.128032686593,427.227098385399,281.908951313379,614.589414079431,612.374049004291,418.890974689217,346.611220079505,223.161801148377,156.793595532101,63.7959792777226,69.7763912199681,43.5703898541864,1292.23382627169,294.385414452693,120.8558946696,581.020160870797,407.983044458649,584.518302581412,275.844462015242,413.467690194965,310.610529815866,578.203782676577,1549.5688605303,701.658016974394,1094.25297059841,24.9203114203961,1058.35452923339,563.223482074022,411.593921562701,273.873415811303,226.714522120936,227.637883015498,268.292204426908,1119.95454631309,280.017715227618,261.106118986703,109.932453599549,569.060471868946,154.658307308888,216.629174854103,125.922976103869,714.328664810004,120.812987060518,410.960914892224,559.865684231871,485.100690231966,93.7816813479711,251.692333396647,321.32050215481,77.4765891777317,195.318694716397,208.547852329897,230.042404505818,195.447527017621,1048.00373407891,174.345969860584,324.025899488209,271.545201291254,176.69543742556,824.445125416683,530.319429939085,124.427948868509,77.8604694421438,154.430826453154,31.4588786027277,484.625114670145,100.595204805711,229.678525281469,218.304024112689,202.329920041674,463.344727096584,559.017268921135,161.156493905429,567.071565436397,194.334832096759,112.749398341344,241.876625493805,850.903299180733,1010.37046929974,441.426153376249,523.517521168855,388.737523969857,335.973962920894,379.501554335936,99.8127472463044,105.433812650934,116.486724305769,246.411263211121,214.673135825775,350.223009415017,272.328597608568,206.037705371533,144.182693180792,282.727668033883,55.0314511609711,86.44208337296,421.012638575766,228.769877730855,1470.07558839587,931.089627755203,200.142512778648,326.414177092594,928.887425982131,115.637538172072,141.92327676051,323.468149545857,57.8490274524673,547.906499119979,803.421349069443,133.293449171048,201.100413021437,378.276876187143,514.369376160022,130.355694238057,146.641695139888,41.4755797088455,131.415698813764,245.967725585837,11.8757222699969,414.831068524022,100.00298378219,91.8806728000803,786.491237533025,327.582999739827,1090.00402447026,366.615600477173,723.530310334331,448.772535401107,470.265073028559,671.71004582196,635.597832112817,2787.62041925364,633.554610357191,582.533943478922,280.187548681742,619.999744670044,152.997191702625,174.980576991985,82.9169439458779,144.495895219068,133.484472670014,373.761157398072,77.1837472540273,66.4820190108638,282.796557428307,217.609634153046,499.633691104718,223.812816838076,450.37902422823,94.5622824324809,182.174401697398,334.656318685289,34.0265662793873,370.237162849795,1009.7680363607,456.491677105675,384.811145541665,434.690575514273,594.475316519294,742.984559991032,177.523485947285,109.313855875402 | |||
|short_description=p1@PTMS | |||
}} |
Revision as of 11:45, 11 January 2014
Short description: | p1@PTMS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_PTMS_5end |
Coexpression cluster: | C3321_Mesenchymal_teratocarcinoma_Renal_leiomyoblastoma_Fibroblast_Wilms_neuroectodermal |
Association with transcript: | -4bp_to_ENST00000389462, NM_002824, uc001qqq.2_5end |
EntrezGene: | PTMS |
HGNC: | 9629 |
UniProt: | F5GXR3P20962 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 7.28e-23 | 250 |
epithelial cell | 3.29e-14 | 253 |
mesodermal cell | 1.79e-11 | 121 |
ectodermal cell | 3.55e-10 | 72 |
neurectodermal cell | 7.82e-10 | 59 |
fibroblast | 1.54e-09 | 76 |
lining cell | 4.75e-08 | 58 |
barrier cell | 4.75e-08 | 58 |
blood vessel endothelial cell | 2.49e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.49e-07 | 18 |
endothelial cell | 3.00e-07 | 36 |
meso-epithelial cell | 9.24e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
cell layer | 1.12e-13 | 309 |
epithelium | 5.93e-13 | 306 |
unilaminar epithelium | 5.68e-10 | 148 |
epithelial tube | 1.35e-09 | 117 |
trunk | 5.97e-09 | 199 |
mesenchyme | 1.14e-08 | 160 |
entire embryonic mesenchyme | 1.14e-08 | 160 |
vasculature | 1.61e-08 | 78 |
vascular system | 1.61e-08 | 78 |
primordium | 5.18e-08 | 160 |
tube | 8.60e-08 | 192 |
subdivision of trunk | 2.37e-07 | 112 |
blood vessel endothelium | 2.49e-07 | 18 |
endothelium | 2.49e-07 | 18 |
cardiovascular system endothelium | 2.49e-07 | 18 |
trunk mesenchyme | 4.78e-07 | 122 |
embryo | 5.40e-07 | 592 |
simple squamous epithelium | 6.83e-07 | 22 |
anatomical conduit | 6.95e-07 | 240 |
epithelial vesicle | 9.46e-07 | 78 |