FFCP PHASE1:Hg19::chr12:9800847..9800868,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=374443 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=149bp_to_uc009zgr.1_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_4_at_LOC374443_5end | |||
|id=chr12:9800847..9800868,+ | |||
|ontology_enrichment_celltype=CL:0000988!2.02e-21!182;CL:0000037!2.66e-21!172;CL:0000566!2.66e-21!172;CL:0000542!9.56e-20!53;CL:0000051!9.56e-20!53;CL:0000838!2.13e-19!52;CL:0002032!3.29e-18!165;CL:0000837!3.29e-18!165;CL:0000738!1.46e-16!140;CL:0002087!4.26e-16!119;CL:0000084!3.09e-15!25;CL:0000827!3.09e-15!25;CL:0000791!3.68e-14!18;CL:0000789!3.68e-14!18;CL:0002420!3.68e-14!18;CL:0002419!3.68e-14!18;CL:0000790!3.68e-14!18;CL:0002031!3.71e-13!124;CL:0000625!2.84e-09!11;CL:0000236!3.75e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000791;6.49e-32;18!CL:0000789;6.49e-32;18!CL:0002419;6.49e-32;18!CL:0000084;1.34e-28;25!CL:0000542;5.27e-21;53!CL:0000625;4.71e-20;11!CL:0000236;2.53e-13;13!CL:0000624;6.30e-12;6!CL:0002087;4.40e-08;104!CL:0000945;3.27e-07;24!CL:0000898;6.02e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,4.28e-35,52;CL:0000542,3.31e-34,53;CL:0000051,3.31e-34,53;CL:0000791,6.58e-32,18;CL:0000789,6.58e-32,18;CL:0002420,6.58e-32,18;CL:0002419,6.58e-32,18;CL:0000790,6.58e-32,18;CL:0000084,2.56e-28,25;CL:0000827,2.56e-28,25;CL:0000988,3.06e-28,177;CL:0000037,2.20e-26,168;CL:0000738,1.08e-22,136;CL:0002032,1.83e-21,161;CL:0000837,1.83e-21,161;CL:0002087,4.43e-21,115;CL:0000625,4.16e-20,11;CL:0002031,2.68e-16,120;CL:0000236,2.54e-12,14;CL:0000624,6.73e-12,6;CL:0000945,3.04e-07,24;CL:0000826,3.04e-07,24;CL:0000898,6.06e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;6.49e-32;18!CL:0000051;5.27e-21;53 | |||
|ontology_enrichment_disease=DOID:2531!5.08e-08!51;DOID:0060083!5.08e-08!51;DOID:1240!6.45e-07!39 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!7.67e-09!15;UBERON:0000179!7.67e-09!15;UBERON:0000463!7.67e-09!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;3.22e-20;15!UBERON:0000179;3.22e-20;15!UBERON:0000463;3.22e-20;15!UBERON:0002390;2.70e-15;32!UBERON:0002193;2.17e-09;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,3.33e-20,15;UBERON:0000179,3.33e-20,15;UBERON:0000463,3.33e-20,15;UBERON:0004177,1.00e-08,7;UBERON:0005057,1.00e-08,7;UBERON:0002370,5.48e-08,4;UBERON:0005058,5.48e-08,4;UBERON:0009113,5.48e-08,4;UBERON:0003295,5.48e-08,4;UBERON:0005562,5.48e-08,4;UBERON:0002390,1.14e-07,98;UBERON:0003061,1.14e-07,98;UBERON:0002193,1.60e-07,108 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0.655324116390517,0,0,0.331397375727916,0,0,0,0.975865597581014,0,0,0,0.85870796139317,0,0.125542639594803,0,0,0,1.18009283054671,3.83829398097213,1.08371286321253,0,0,0,0.774672005803016,0.995184627411951,0.587200878669695,2.21598163412751,2.80762226458198,2.82114131930607,0.895661896959697,1.94336199611388,0,0.145398238779565,0.377875943688809,0.727752183563449,0,0.411167888021826,0,0,0,0.236482229888585,0.344745680736619,1.29096936716765,1.35426486594342,0,0,0.224723484445085,0,0.320929027076094,0.639337125799041,0.329851300186716,0.199463657621632,0,0,0,0.622822248995575,0.251248665256743,0.521482918420201,0,0.605399502633369,0.368277635987565,1.26584954976354,0.845021145247767,0.425208599930087,0.838634582033504,0.44931452458598,0.450530678524519,0.48217676009124,0.285012743741249,1.79025009479181,1.0959849225878,3.51992488922645,1.63841583378639,4.44754626931777,1.70692089026603,2.80277190925209,4.02326707968138,2.64417949113945,6.67837628174755,1.1384259382189,0,2.29363936875137,2.64342657158052,1.68152568894461,2.37045676297569,9.44206896546399,9.03924754323079,7.19605246498282,9.52963023726865,19.881258264649,24.1458380924714,15.5861382726329,9.02424700769906,14.7302953737419,12.84896588585,18.4146627360211,4.48319619039863,2.73124629875744,8.05745732558013,4.14525026678773,10.1431080007268,18.8323935215817,27.5567052932404,27.179236189294,7.7050353034345,12.6462762888634,15.1196076012357,18.7234572094432,7.32700452945422,16.2770863464105,11.4054245333805,12.4977348834551,13.4385941712139,14.9916871862815,14.443412374685,9.85353596305256,5.84659555351724,5.61624411145365,6.51709817472595,0,0,0.255725123687061,0,0,0.289693037921647,0.795285947051099,0.486634870302636,0.189069634328136,0,0.175669571386252,0.261958150995425,0,0,0.324547393654683,0,0,0.715471872916026,2.85997455390064,2.22874500797739,0,0,0,0,0,0,0.208994966536811,0,0,0.33472061276467,0,0.760272105718513,0,0,0,0.17859945656816,0,0.225222960966644,0,0,0,0,0,0,0,0.12663051166458,0,1.14734648299525,0,0,0,0,0.311211035399766,0.134710672069688,0,0,0,0,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0,0,0.368502951935304,0.206651562351531,0,0,0,0,0.505008341862199,0.375355559615893,0,0,0,0,0,0,0,0.211931901159562,0,0,0.515281080091258,0,0.337552664482532,0.292311015483596,0.504867548488229,0.276149695926898,0.484938170456436,0.355009592516614,0.201504196455281,0,0,0.272746120590835,0,0.121973706129595,0.132529768321485,0.69716365721711,0.621966330092223,0.252320850875628,0.72995471815166,0,0,0,0,0,0,0.168584690078102,0,0.110293972732394,0,0,0.404493924480493,0.196221465125346,0,0,0,0.8231480226628,0,0,0,0,5.29755719297581,0,0,0.109750285408626,0,0.301586917234893,0.370353780634118,0.651616610620649,0,0,0.115930404975077,0,0,0.925971025153221,0.190254152234598,0,0.858486162094873,0,0,0,0,0.16798212819886,0.425325291727159,0.268675568108545,0,0,0,0.264145302039678,0.414656231081544,0.432359860250884,0.12624243342638,0.063497894292169,0,0,0,0.102827492703324,0.300343057843917,0.571652865261156,0.224262168690721,0.43596006883328,0.1466765716419,0.258543431515556,0,0,0.531876233169741,0,0,0,0,0.285955987316295,0,0.823240336780769,0.325736184293735,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0.537182889719687,5.15591662370225,5.31983052545203,6.90008239550455,5.51875056002918,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0.24538298343828,0,0.271265023699736,0,0.356857977594324,0.157702415033935,0,0.300946099727719,0,0,0,0,0.260650843404249,0.195801157462741,0,7.44364894042395,4.52999821719095,4.16237475433433,0,0,0,0.248107807818777,0.61384789315225,0,0,0,0,0,0.154209693802656,0,0.246381468041427,0,0,0.846016147141356,0,0.0920809889358963,0.34444334449382,0,0,0,0,0,0,0.316654886678627,0,0,0,0,0.270946437543853,1.00337954770971,0.509752546090077,0,0,0.219259876645935,0,0,0.328014645699706,0.650756789328606,0.206082023295445,0.0915694648183434,0,0,0,0,0.193341436584244,0.308097234229289,0,0.137836572484531,0.429680979473094,0.290033387828457,0.0852266274161009,0,0,0.192190067365106,0.510450849978337,0,0,0.31481234683064,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0.539617372749944,0,0.235624804691373,0,0,0,0,0,0,0.272999822815972,0.282810863907425,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0.0982490410131212,0,0,0,0,0.379473173765715,0.349934720244983,0.0962221127255121,0.670302275535787,1.08890984861323,0.0941438007767792,0,0,0,0,2.53723804616085,3.82318603571188,3.41788312304498,5.24109906007136,5.34770955012053,6.48473311192717,5.40031437238115,6.34500141035416,0,0.962479855263359,0.245040215981032,0.743212700502875,0.721346064882224,2.06311345710401,0.956557636372934,1.99579371432817,1.7235483311913,1.48171507906718,0,0.561594356226918,0.684704037099577,0.94007937463814,0,1.01575066680962,1.1241165257259,1.00899853595524,0.851692475380653,1.03051603426729,0.307240764308458,0,0,1.36771666781428,0.278406173895242,0,1.08182271390393,3.66379164797602,0,0,0,0.36408156524854,0.891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| |||
|short_description=p4@LOC374443 | |||
}} |
Revision as of 12:01, 11 January 2014
Short description: | p4@LOC374443 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LOC374443_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 149bp_to_uc009zgr.1_5end |
EntrezGene: | LOC374443 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 4.28e-35 | 52 |
lymphocyte | 3.31e-34 | 53 |
common lymphoid progenitor | 3.31e-34 | 53 |
mature alpha-beta T cell | 6.58e-32 | 18 |
alpha-beta T cell | 6.58e-32 | 18 |
immature T cell | 6.58e-32 | 18 |
mature T cell | 6.58e-32 | 18 |
immature alpha-beta T cell | 6.58e-32 | 18 |
T cell | 2.56e-28 | 25 |
pro-T cell | 2.56e-28 | 25 |
hematopoietic cell | 3.06e-28 | 177 |
hematopoietic stem cell | 2.20e-26 | 168 |
leukocyte | 1.08e-22 | 136 |
hematopoietic oligopotent progenitor cell | 1.83e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.83e-21 | 161 |
nongranular leukocyte | 4.43e-21 | 115 |
CD8-positive, alpha-beta T cell | 4.16e-20 | 11 |
hematopoietic lineage restricted progenitor cell | 2.68e-16 | 120 |
B cell | 2.54e-12 | 14 |
CD4-positive, alpha-beta T cell | 6.73e-12 | 6 |
lymphocyte of B lineage | 3.04e-07 | 24 |
pro-B cell | 3.04e-07 | 24 |
naive T cell | 6.06e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 3.33e-20 | 15 |
haemolymphatic fluid | 3.33e-20 | 15 |
organism substance | 3.33e-20 | 15 |
hemopoietic organ | 1.00e-08 | 7 |
immune organ | 1.00e-08 | 7 |
thymus | 5.48e-08 | 4 |
hemolymphoid system gland | 5.48e-08 | 4 |
thymic region | 5.48e-08 | 4 |
pharyngeal gland | 5.48e-08 | 4 |
thymus primordium | 5.48e-08 | 4 |
hematopoietic system | 1.14e-07 | 98 |
blood island | 1.14e-07 | 98 |
hemolymphoid system | 1.60e-07 | 108 |