Personal tools

FFCP PHASE1:Hg19::chr12:31804958..31804974,-: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C157|description=CAGE_peak_at_chr12:31804958..31804974,-|id=chr12:31804958..31804974,-|ontology_enrichment_celltype=CL:0002322!8.44e-10!5|ontology_enrichment_celltype_v019=CL:0000039;2.58e-19;7!CL:0000586;2.58e-19;7!CL:0002253;2.23e-08;2|ontology_enrichment_celltype_v019_2=CL:0000039,2.51e-19,7;CL:0000586,2.51e-19,7;CL:0002253,2.00e-08,2|ontology_enrichment_development_v019=UBERON:0009117;1.02e-13;10!UBERON:0005564;1.02e-13;10|ontology_enrichment_disease=DOID:3095!6.42e-10!22;DOID:2994!6.42e-10!22;DOID:169!4.87e-09!6|ontology_enrichment_disease_v019=DOID:3095;2.54e-16;22!DOID:2994;2.54e-16;22!DOID:0050619;1.92e-15;1!DOID:1357;1.92e-15;1|ontology_enrichment_disease_v019_2=DOID:3095,2.35e-16,22;DOID:2994,2.35e-16,22;DOID:0050619,9.99e-16,1;DOID:1357,9.99e-16,1|ontology_enrichment_uberon=UBERON:0000013!1.69e-07!5;UBERON:0002410!1.69e-07!5|ontology_enrichment_uberon_v019=UBERON:0000473;5.51e-17;8!UBERON:0001764;1.92e-15;1!UBERON:0001825;1.92e-15;1!UBERON:0003135;1.59e-12;11!UBERON:0001905;2.23e-08;2!UBERON:0002757;2.23e-08;2!UBERON:0010134;2.23e-08;2!UBERON:0005408;2.23e-08;2!UBERON:0001899;2.23e-08;2!UBERON:0000991;8.18e-07;21|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.37e-17,8;UBERON:0001764,9.99e-16,1;UBERON:0001825,9.99e-16,1;UBERON:0003135,1.56e-12,11;UBERON:0001905,2.87e-08,2;UBERON:0002757,2.87e-08,2;UBERON:0010134,2.87e-08,2;UBERON:0005408,2.87e-08,2;UBERON:0001899,2.87e-08,2;UBERON:0000991,8.10e-07,21;UBERON:0009196,8.10e-07,21;UBERON:0009117,8.10e-07,21;UBERON:0005564,8.10e-07,21|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506328996723799,0.194874010322397,0,0.0920498986422993,0,0,0.10075209822764,0,0,0,0,0.243947412259191,0.265059536642971,0.116193942869518,0.621966330092223,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434418072340414,0,0,0,0,0.106727557803444,0,0,0,0.248107807818777,0,0.280660094433074,0,0,0,0,0,0.355123450626254,0.328508624055237,0,0.813472649219715,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0.137836572484531,0.429680979473094,0.145016693914229,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.54907405947211,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573645408816206,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0.606802608747567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0.689486746482929,0,0,0,0.241192877250816,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0.108647371922008,0.31900115973192,0,0.533034776018635,2.04386596391473,0,0,0,0,0,0,0,0,0,0,1.73110911793673,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.799238438328521,0,0,0.686379991447858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.575745591958336,0,0,1.017074150619,0.542999601753713,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08803560673895,0,0,0.655745261419609,1.88464915500281,0,0,0,0,0,0,1.798532254171,0,0,0,0,0,0.724605143054126,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0.181848659202559,0.107410557042488,0.464033759878494,0,0,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552317850755522,0,0,0.895260599125562,0.754773679776773,0.629063767423586,0.764467467344097,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0.496211178389294,0,0,1.07140367175657,0.672567444437648,0,0,0.0887023701626388,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0.142953088353313,1.42212250559454,0.929931402945002,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0.588901401691458,0,0,0,0,0,0,0.596852325484105,0.118920090777569,0,0.439762066981716,0,0,0,0,0.245148321753905,0.235676547101626,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0.5290268405154,0.371995018166751,0,0,0,1.74824915141913,1.39368351112581,3.16165372200143,0,2.11358268930143,14.7917448182501,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0.244482888365733,0,0,0,0|short_description=p@chr12:31804958..31804974,-}}
{{FFCP
|DHSsupport=supported
|DPIdataset=robust
|EntrezGene=NA
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript
|HGNC=NA
|TSSclassifier=not
|UniProt=NA
|association_with_transcript=NA
|coexpression_cluster_id=C157
|description=CAGE_peak_at_chr12:31804958..31804974,-
|id=chr12:31804958..31804974,-
|ontology_enrichment_celltype=CL:0002322!8.44e-10!5
|ontology_enrichment_celltype_v019=CL:0000039;2.58e-19;7!CL:0000586;2.58e-19;7!CL:0002253;2.23e-08;2
|ontology_enrichment_celltype_v019_2=CL:0000039,2.51e-19,7;CL:0000586,2.51e-19,7;CL:0002253,2.00e-08,2
|ontology_enrichment_development_v019=UBERON:0009117;1.02e-13;10!UBERON:0005564;1.02e-13;10
|ontology_enrichment_disease=DOID:3095!6.42e-10!22;DOID:2994!6.42e-10!22;DOID:169!4.87e-09!6
|ontology_enrichment_disease_v019=DOID:3095;2.54e-16;22!DOID:2994;2.54e-16;22!DOID:0050619;1.92e-15;1!DOID:1357;1.92e-15;1
|ontology_enrichment_disease_v019_2=DOID:3095,2.35e-16,22;DOID:2994,2.35e-16,22;DOID:0050619,9.99e-16,1;DOID:1357,9.99e-16,1
|ontology_enrichment_uberon=UBERON:0000013!1.69e-07!5;UBERON:0002410!1.69e-07!5
|ontology_enrichment_uberon_v019=UBERON:0000473;5.51e-17;8!UBERON:0001764;1.92e-15;1!UBERON:0001825;1.92e-15;1!UBERON:0003135;1.59e-12;11!UBERON:0001905;2.23e-08;2!UBERON:0002757;2.23e-08;2!UBERON:0010134;2.23e-08;2!UBERON:0005408;2.23e-08;2!UBERON:0001899;2.23e-08;2!UBERON:0000991;8.18e-07;21
|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.37e-17,8;UBERON:0001764,9.99e-16,1;UBERON:0001825,9.99e-16,1;UBERON:0003135,1.56e-12,11;UBERON:0001905,2.87e-08,2;UBERON:0002757,2.87e-08,2;UBERON:0010134,2.87e-08,2;UBERON:0005408,2.87e-08,2;UBERON:0001899,2.87e-08,2;UBERON:0000991,8.10e-07,21;UBERON:0009196,8.10e-07,21;UBERON:0009117,8.10e-07,21;UBERON:0005564,8.10e-07,21
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506328996723799,0.194874010322397,0,0.0920498986422993,0,0,0.10075209822764,0,0,0,0,0.243947412259191,0.265059536642971,0.116193942869518,0.621966330092223,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434418072340414,0,0,0,0,0.106727557803444,0,0,0,0.248107807818777,0,0.280660094433074,0,0,0,0,0,0.355123450626254,0.328508624055237,0,0.813472649219715,0,0,0,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0.137836572484531,0.429680979473094,0.145016693914229,0,0.178064071293475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0.54907405947211,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573645408816206,0,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12284324244932,0,0.606802608747567,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0.689486746482929,0,0,0,0.241192877250816,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,0,0,0.108647371922008,0.31900115973192,0,0.533034776018635,2.04386596391473,0,0,0,0,0,0,0,0,0,0,1.73110911793673,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.799238438328521,0,0,0.686379991447858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.575745591958336,0,0,1.017074150619,0.542999601753713,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.08803560673895,0,0,0.655745261419609,1.88464915500281,0,0,0,0,0,0,1.798532254171,0,0,0,0,0,0.724605143054126,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0.181848659202559,0.107410557042488,0.464033759878494,0,0,0.686791410365586,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552317850755522,0,0,0.895260599125562,0.754773679776773,0.629063767423586,0.764467467344097,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0.161475645631851,0,0,0,0,0,0,0,0,0.150420656698515,0,0,0.523813388962845,0,0,0,0,0,0,0,0,0.496211178389294,0,0,1.07140367175657,0.672567444437648,0,0,0.0887023701626388,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0.142953088353313,1.42212250559454,0.929931402945002,0.173858272302579,0,0,0,0,0,0,0,0,0,0,0,0,0.588901401691458,0,0,0,0,0,0,0.596852325484105,0.118920090777569,0,0.439762066981716,0,0,0,0,0.245148321753905,0.235676547101626,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157771562193185,0,0,0.5290268405154,0.371995018166751,0,0,0,1.74824915141913,1.39368351112581,3.16165372200143,0,2.11358268930143,14.7917448182501,0,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0.244482888365733,0,0,0,0
|short_description=p@chr12:31804958..31804974,-
}}

Revision as of 12:53, 11 January 2014

Short description:p@chr12:31804958..31804974, -
Species:Human (Homo sapiens)
DPI dataset: Robust
TSS-like-by-RIKEN-classifier(Yes/No): No
DHS support(Yes/No): Yes
Description: CAGE_peak_at_chr12:31804958..31804974, -
Coexpression cluster:C157_testicular_H9_testis_iPS_teratocarcinoma_colon_trachea
Association with transcript: NA
EntrezGene:NA
HGNC: NA
UniProt: NA
Genome view:ZENBU


View on UCSC genome browser


Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression




0.0
2.5
5.0
7.5
10.0
12.5
15.0
17.5




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data