FFCP PHASE1:Hg19::chr16:57662527..57662556,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9289 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4512 | |||
|TSSclassifier=strong | |||
|UniProt=Q9Y653,B3KQV4,B4DR54 | |||
|association_with_transcript=108bp_to_ENST00000388812,ENST00000388813,ENST00000456916,ENST00000538815,NM_001145771,NM_001145772,NM_001145773,NM_201524,NM_201525,uc002emd.2,uc002eme.2,uc002emf.2,uc010vhs.1,uc010vht.1_5end | |||
|coexpression_cluster_id=C2380 | |||
|description=CAGE_peak_1_at_GPR56_5end | |||
|id=chr16:57662527..57662556,+ | |||
|ontology_enrichment_celltype=CL:0002139!8.46e-15!24;CL:0000115!4.31e-14!35;CL:0002078!2.39e-12!44;CL:0000071!2.61e-11!18;CL:0002546!2.61e-11!18;CL:0000213!1.27e-10!57;CL:0000215!1.27e-10!57 | |||
|ontology_enrichment_celltype_v019=CL:0002139;3.68e-15;24!CL:0000115;2.04e-12;36!CL:0000071;1.43e-11;18!CL:0002078;5.67e-08;45!CL:0000213;5.95e-07;58!CL:0000215;5.95e-07;58!CL:1000413;9.03e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,3.80e-15,24;CL:0000115,1.52e-14,36;CL:0002078,2.06e-12,45;CL:0000071,1.45e-11,18;CL:0002546,1.45e-11,18;CL:0000213,1.01e-10,58;CL:0000215,1.01e-10,58;CL:1000413,9.08e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;1.43e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.62e-29!115;UBERON:0005743!2.56e-23!86;UBERON:0001049!3.42e-23!57;UBERON:0005068!3.42e-23!57;UBERON:0006241!3.42e-23!57;UBERON:0007135!3.42e-23!57;UBERON:0003075!9.83e-23!86;UBERON:0007284!9.83e-23!86;UBERON:0001017!2.81e-22!82;UBERON:0000955!2.08e-20!69;UBERON:0006238!2.08e-20!69;UBERON:0002616!2.21e-20!59;UBERON:0000477!4.60e-20!286;UBERON:0002346!1.08e-19!90;UBERON:0000025!1.63e-19!194;UBERON:0000073!1.67e-19!94;UBERON:0001016!1.67e-19!94;UBERON:0004111!6.74e-19!241;UBERON:0003080!7.56e-17!42;UBERON:0000033!1.57e-16!123;UBERON:0003056!1.90e-16!61;UBERON:0002780!1.91e-16!41;UBERON:0001890!1.91e-16!41;UBERON:0006240!1.91e-16!41;UBERON:0000153!5.82e-16!129;UBERON:0007811!5.82e-16!129;UBERON:0000119!8.71e-16!312;UBERON:0000483!1.61e-15!309;UBERON:0002020!4.02e-14!34;UBERON:0003528!4.02e-14!34;UBERON:0001893!5.54e-14!34;UBERON:0002791!1.51e-13!33;UBERON:0001869!6.64e-13!32;UBERON:0004121!1.21e-12!169;UBERON:0001986!2.61e-11!18;UBERON:0004638!2.61e-11!18;UBERON:0004852!2.61e-11!18;UBERON:0000924!3.25e-11!173;UBERON:0006601!3.25e-11!173;UBERON:0000956!2.46e-09!25;UBERON:0000203!2.46e-09!25;UBERON:0000487!1.04e-08!22;UBERON:0002619!1.11e-08!22;UBERON:0000481!3.97e-08!347;UBERON:0002049!4.08e-08!79;UBERON:0007798!4.08e-08!79;UBERON:0000467!6.38e-08!625;UBERON:0000480!1.11e-07!626;UBERON:0001950!1.41e-07!20;UBERON:0003076!1.42e-07!15;UBERON:0003057!1.42e-07!15;UBERON:0000055!3.66e-07!69;UBERON:0000475!6.28e-07!365;UBERON:0006914!7.29e-07!25;UBERON:0001009!8.63e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;1.63e-12;53!UBERON:0002616;1.63e-12;53!UBERON:0001893;1.99e-12;34!UBERON:0003528;2.21e-12;34!UBERON:0002020;2.21e-12;34!UBERON:0002780;3.92e-12;41!UBERON:0001890;3.92e-12;41!UBERON:0002791;4.71e-12;32!UBERON:0001869;5.74e-12;32!UBERON:0004638;1.43e-11;18!UBERON:0001986;1.43e-11;18!UBERON:0004852;1.43e-11;18!UBERON:0001017;4.18e-10;75!UBERON:0000955;1.09e-09;68!UBERON:0000956;2.03e-09;25!UBERON:0000203;2.03e-09;25!UBERON:0007023;4.91e-09;114!UBERON:0002619;9.62e-09;22!UBERON:0000487;1.12e-08;22!UBERON:0001016;1.01e-07;83!UBERON:0001950;1.29e-07;20!UBERON:0003915;9.03e-07;9!UBERON:0004700;9.03e-07;9!UBERON:0001917;9.03e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.63e-29,114;UBERON:0001049,3.72e-23,56;UBERON:0005068,3.72e-23,56;UBERON:0006241,3.72e-23,56;UBERON:0007135,3.72e-23,56;UBERON:0003075,4.75e-23,82;UBERON:0007284,4.75e-23,82;UBERON:0001017,8.92e-23,81;UBERON:0000073,1.62e-21,53;UBERON:0002616,1.62e-21,53;UBERON:0000955,1.31e-20,68;UBERON:0006238,1.31e-20,68;UBERON:0002346,6.24e-20,86;UBERON:0001016,5.93e-19,89;UBERON:0000025,7.42e-19,192;UBERON:0004111,8.09e-18,240;UBERON:0003056,1.01e-16,61;UBERON:0002780,1.15e-16,41;UBERON:0001890,1.15e-16,41;UBERON:0003080,1.15e-16,41;UBERON:0006240,1.15e-16,41;UBERON:0010314,2.47e-16,132;UBERON:0010371,3.65e-16,104;UBERON:0003528,2.80e-14,34;UBERON:0002020,2.80e-14,34;UBERON:0001893,3.88e-14,34;UBERON:0000119,2.43e-13,309;UBERON:0002791,3.90e-13,32;UBERON:0000483,4.33e-13,306;UBERON:0001869,4.94e-13,32;UBERON:0004638,1.45e-11,18;UBERON:0001986,1.45e-11,18;UBERON:0004852,1.45e-11,18;UBERON:0004121,9.16e-11,171;UBERON:0000924,9.16e-11,171;UBERON:0006601,9.16e-11,171;UBERON:0000956,2.21e-09,25;UBERON:0000203,2.21e-09,25;UBERON:0000487,9.99e-09,22;UBERON:0002619,1.04e-08,22;UBERON:0002049,4.74e-08,78;UBERON:0007798,4.74e-08,78;UBERON:0003076,9.83e-08,15;UBERON:0003057,9.83e-08,15;UBERON:0001950,1.39e-07,20;UBERON:0000055,3.75e-07,68;UBERON:0001009,6.74e-07,112;UBERON:0000489,7.29e-07,31;UBERON:0003915,9.08e-07,9;UBERON:0004700,9.08e-07,9;UBERON:0001917,9.08e-07,9 | |||
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| |||
|short_description=p1@GPR56 | |||
}} |
Revision as of 11:40, 20 January 2014
Short description: | p1@GPR56 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPR56_5end |
Coexpression cluster: | C2380_Melanocyte_mesothelioma_Renal_Neural_renal_Endothelial_Hepatic |
Association with transcript: | 108bp_to_ENST00000388812, ENST00000388813, ENST00000456916, ENST00000538815, NM_001145771, NM_001145772, NM_001145773, NM_201524, NM_201525, uc002emd.2, uc002eme.2, uc002emf.2, uc010vhs.1, uc010vht.1_5end |
EntrezGene: | GPR56 |
HGNC: | 4512 |
UniProt: | Q9Y653B3KQV4B4DR54 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 3.80e-15 | 24 |
endothelial cell | 1.52e-14 | 36 |
meso-epithelial cell | 2.06e-12 | 45 |
blood vessel endothelial cell | 1.45e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.45e-11 | 18 |
lining cell | 1.01e-10 | 58 |
barrier cell | 1.01e-10 | 58 |
endothelial cell of artery | 9.08e-07 | 9 |