FFCP PHASE1:Hg19::chr18:29171832..29171847,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7276 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12405 | |||
|TSSclassifier=not | |||
|UniProt=E7EW61,F5H868,E9KL36,P02766 | |||
|association_with_transcript=102bp_to_ENST00000432547,ENST00000541025,NM_000371,uc002kwx.3_5end | |||
|coexpression_cluster_id=C160 | |||
|description=CAGE_peak_1_at_TTR_5end | |||
|id=chr18:29171832..29171847,+ | |||
|ontology_enrichment_celltype=CL:0000181!6.21e-08!12;CL:0000417!6.21e-08!12;CL:0000668!6.21e-08!12;CL:0000414!6.21e-08!12;CL:0000412!6.21e-08!12;CL:0000182!6.21e-08!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.06e-08;12!CL:0000149;2.70e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.07e-08,12;CL:0000149,2.35e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0006601;5.43e-12;82!UBERON:0004161;1.54e-09;11!UBERON:0009497;8.54e-08;13 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.48e-67!115;UBERON:0005743!2.11e-48!86;UBERON:0001049!2.63e-45!57;UBERON:0005068!2.63e-45!57;UBERON:0006241!2.63e-45!57;UBERON:0007135!2.63e-45!57;UBERON:0001017!1.02e-43!82;UBERON:0000073!2.65e-43!94;UBERON:0001016!2.65e-43!94;UBERON:0002616!8.56e-39!59;UBERON:0000955!1.56e-38!69;UBERON:0006238!1.56e-38!69;UBERON:0003075!2.28e-38!86;UBERON:0007284!2.28e-38!86;UBERON:0002780!6.39e-37!41;UBERON:0001890!6.39e-37!41;UBERON:0006240!6.39e-37!41;UBERON:0003080!1.03e-35!42;UBERON:0002346!1.05e-35!90;UBERON:0001893!1.00e-29!34;UBERON:0002020!1.66e-29!34;UBERON:0003528!1.66e-29!34;UBERON:0002791!9.69e-29!33;UBERON:0003056!4.07e-28!61;UBERON:0001869!2.22e-27!32;UBERON:0004121!6.00e-24!169;UBERON:0000153!8.91e-24!129;UBERON:0007811!8.91e-24!129;UBERON:0000033!7.49e-23!123;UBERON:0000924!7.97e-23!173;UBERON:0006601!7.97e-23!173;UBERON:0002619!6.75e-21!22;UBERON:0000956!7.63e-21!25;UBERON:0000203!7.63e-21!25;UBERON:0001950!1.17e-18!20;UBERON:0000025!2.34e-18!194;UBERON:0000062!3.85e-16!511;UBERON:0004111!1.34e-15!241;UBERON:0000064!5.22e-15!219;UBERON:0000483!2.67e-13!309;UBERON:0000119!6.57e-13!312;UBERON:0000475!9.91e-13!365;UBERON:0000481!1.44e-12!347;UBERON:0000477!2.94e-12!286;UBERON:0000468!3.01e-11!659;UBERON:0003076!1.46e-10!15;UBERON:0003057!1.46e-10!15;UBERON:0002368!2.20e-10!35;UBERON:0002420!3.32e-10!9;UBERON:0007245!3.32e-10!9;UBERON:0010009!3.32e-10!9;UBERON:0010011!3.32e-10!9;UBERON:0000454!3.32e-10!9;UBERON:0002308!3.77e-10!9;UBERON:0000125!3.77e-10!9;UBERON:0000922!4.90e-10!612;UBERON:0000467!1.29e-09!625;UBERON:0000480!1.55e-09!626;UBERON:0002107!2.50e-09!19;UBERON:0006925!2.50e-09!19;UBERON:0008836!2.50e-09!19;UBERON:0001871!3.82e-09!7;UBERON:0005057!4.01e-09!26;UBERON:0004732!7.99e-09!13;UBERON:0001894!1.37e-08!7;UBERON:0006222!1.37e-08!7;UBERON:0002298!3.39e-08!8;UBERON:0009663!3.87e-08!7;UBERON:0000923!6.65e-08!604;UBERON:0005291!6.65e-08!604;UBERON:0006598!6.65e-08!604;UBERON:0002532!6.65e-08!604;UBERON:0004733!7.20e-08!12;UBERON:0002028!7.20e-08!12;UBERON:0007277!7.20e-08!12;UBERON:0002050!7.91e-08!605;UBERON:0005423!7.91e-08!605;UBERON:0000949!1.09e-07!45;UBERON:0008835!1.59e-07!22;UBERON:0003894!1.59e-07!22;UBERON:0009497!2.22e-07!25;UBERON:0000015!2.22e-07!25;UBERON:0002423!2.22e-07!25;UBERON:0006235!2.22e-07!25;UBERON:0004161!2.22e-07!25;UBERON:0000349!4.87e-07!5;UBERON:0009854!4.93e-07!23;UBERON:0000966!7.51e-07!5;UBERON:0005388!7.51e-07!5;UBERON:0001802!7.51e-07!5;UBERON:0002530!8.68e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.83e-28;41!UBERON:0001890;2.83e-28;41!UBERON:0003528;9.50e-28;34!UBERON:0002020;9.50e-28;34!UBERON:0001893;2.79e-27;34!UBERON:0000073;3.59e-27;53!UBERON:0002616;3.59e-27;53!UBERON:0002791;7.81e-27;32!UBERON:0001869;7.83e-27;32!UBERON:0002619;3.56e-25;22!UBERON:0001950;3.22e-22;20!UBERON:0000956;1.58e-21;25!UBERON:0000203;1.58e-21;25!UBERON:0001017;3.55e-19;75!UBERON:0000955;1.91e-18;68!UBERON:0001016;3.56e-17;83!UBERON:0007023;7.73e-17;114!UBERON:0002420;3.69e-13;9!UBERON:0007245;3.69e-13;9!UBERON:0010009;3.69e-13;9!UBERON:0010011;3.69e-13;9!UBERON:0000454;3.69e-13;9!UBERON:0000125;4.35e-13;9!UBERON:0002308;4.35e-13;9!UBERON:0004732;1.09e-11;13!UBERON:0002107;4.53e-11;19!UBERON:0006925;4.53e-11;19!UBERON:0002298;5.95e-11;6!UBERON:0004733;2.10e-10;12!UBERON:0002028;2.10e-10;12!UBERON:0009663;2.12e-10;7!UBERON:0002368;1.84e-09;33!UBERON:0002423;3.80e-09;25!UBERON:0000349;6.85e-09;5!UBERON:0011216;9.90e-09;132!UBERON:0001871;3.27e-08;6!UBERON:0000922;4.93e-08;49!UBERON:0001872;5.26e-08;5!UBERON:0002784;5.93e-08;4!UBERON:0000160;3.59e-07;17!UBERON:0001896;6.63e-07;3!UBERON:0005290;6.63e-07;3!UBERON:0000949;7.16e-07;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.62e-53,114;UBERON:0001049,9.24e-52,56;UBERON:0005068,9.24e-52,56;UBERON:0006241,9.24e-52,56;UBERON:0007135,9.24e-52,56;UBERON:0001017,1.52e-49,81;UBERON:0000073,7.75e-48,53;UBERON:0002616,7.75e-48,53;UBERON:0001016,7.97e-45,89;UBERON:0003075,3.88e-42,82;UBERON:0007284,3.88e-42,82;UBERON:0000955,4.93e-42,68;UBERON:0006238,4.93e-42,68;UBERON:0002346,2.05e-39,86;UBERON:0002780,2.18e-38,41;UBERON:0001890,2.18e-38,41;UBERON:0003080,2.18e-38,41;UBERON:0006240,2.18e-38,41;UBERON:0011216,3.62e-37,223;UBERON:0001893,3.74e-33,34;UBERON:0003528,6.93e-33,34;UBERON:0002020,6.93e-33,34;UBERON:0003056,8.90e-32,61;UBERON:0010371,3.87e-31,104;UBERON:0002791,3.24e-30,32;UBERON:0001869,4.03e-30,32;UBERON:0002619,2.78e-25,22;UBERON:0010314,3.03e-24,132;UBERON:0004121,5.69e-24,171;UBERON:0000924,5.69e-24,171;UBERON:0006601,5.69e-24,171;UBERON:0001950,2.52e-22,20;UBERON:0000956,1.27e-21,25;UBERON:0000203,1.27e-21,25;UBERON:0000025,7.19e-20,192;UBERON:0003076,4.73e-14,15;UBERON:0003057,4.73e-14,15;UBERON:0000483,7.07e-14,306;UBERON:0004111,1.18e-13,240;UBERON:0000119,1.54e-13,309;UBERON:0002420,4.09e-13,9;UBERON:0007245,4.09e-13,9;UBERON:0010009,4.09e-13,9;UBERON:0010011,4.09e-13,9;UBERON:0000454,4.09e-13,9;UBERON:0000125,4.85e-13,9;UBERON:0002308,4.85e-13,9;UBERON:0004732,1.02e-11,13;UBERON:0002107,4.53e-11,19;UBERON:0006925,4.53e-11,19;UBERON:0008836,4.53e-11,19;UBERON:0002298,6.01e-11,6;UBERON:0004733,1.98e-10,12;UBERON:0002028,1.98e-10,12;UBERON:0007277,1.98e-10,12;UBERON:0009663,2.34e-10,7;UBERON:0002368,5.27e-10,35;UBERON:0000922,2.59e-09,592;UBERON:0009497,3.80e-09,25;UBERON:0000015,3.80e-09,25;UBERON:0002423,3.80e-09,25;UBERON:0006235,3.80e-09,25;UBERON:0004161,3.80e-09,25;UBERON:0008835,4.03e-09,22;UBERON:0003894,4.03e-09,22;UBERON:0000349,6.86e-09,5;UBERON:0009854,1.37e-08,23;UBERON:0000923,2.91e-08,560;UBERON:0010316,2.91e-08,560;UBERON:0005291,2.91e-08,560;UBERON:0006598,2.91e-08,560;UBERON:0010317,2.91e-08,560;UBERON:0002532,2.91e-08,560;UBERON:0001871,3.16e-08,6;UBERON:0001872,4.75e-08,5;UBERON:0002050,5.09e-08,564;UBERON:0002784,5.94e-08,4;UBERON:0005423,6.94e-08,581;UBERON:0000949,7.47e-08,45;UBERON:0000966,8.15e-08,6;UBERON:0005388,8.15e-08,6;UBERON:0001802,8.15e-08,6;UBERON:0001781,9.14e-08,4;UBERON:0007499,1.18e-07,25;UBERON:0009856,3.03e-07,26;UBERON:0000160,3.32e-07,17;UBERON:0001896,6.63e-07,3;UBERON:0005290,6.63e-07,3;UBERON:0010096,6.63e-07,3 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0.502170558379211,0,0.410502947249729,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,281.932460008826,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0.302714855289863,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0.731842236777572,0.132529768321485,107.363203211435,64.6844983295912,35.0725982717124,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,8.6430542379594,1.47008711385542,18981.5664645692,3503.77902745574,1352.90888630042,0,2145.28733350753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.411309970813294,1.8020583470635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0,0,0,0,0,0,1.30139853857622,6.95959931499926,1.50764638800914,7.65526501983796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,606.835296399535,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,203.364949217297,307.677737666324,3155.19429305975,12315.8738761824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.21484227251296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12064.9987885481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0,1.19372242368845,1.78178808499583,0,40.7600535584182,21.5224207108085,0,0,0,8.96615947129814,0,1200.71147627348,0,0,0.933118762985422,0,0,0,0.493217028184668,0,0,1282.42722308397,1204.6865227298,191.629246081146,0,0,0,0,0,0,0,0,0,23.0292760311598,5.90922549264499,1.52581736317083,7.74054819518572,423.519737960434,5936.34946158934,0,0,0.692552326534174,0,0,0.0897576444097721,0,7.01802551410223,1.4655614944298,1.06606955203727,0,0,0,0,0,0,0.189753732724185,0,0,0,217.966436151137,0,1.99052386215701,8.1380959343072,7.94339188413713,0,0,0,13803.6846333097,0,435.966133494856,0,0,0,0.394584402849391,320.625397528959,1.53036380815245,10.8680916960999,0.150323419414493,0,0,0,0,0,0,0,0,0,0,4.89234671077684,0,0,0,0,0.969890164884194,0,940.983804610137,0,0,3.92526934926448,0,0,144.507677438542,0,0,0,20.4198047455738,0,0,0,0,0,0,0,4.20294202096853,11.5000518269274,0,0,0,0.558564802544508,8.93725653645566,0,3.39454300848285,4.29226048136571,0.223171457441873,2.01550417460179,0,117.660909022728,116.04762753854,99.8880203579737,112.766128868051,15.0594046717566,0,19.0855125554233,5202.28909643163,0,0,0,0,0,51.3333753760308,0,4.64953673065269,3.67182116944987,0,0,0,0.714695326373367,0.662091970365432,0,0,0,0.326587360109409,0,0,0,0.226624183040251,13262.0978344644,2723.01656714615,22.3659514505482,13.8844231829824,0.855434189421647,0,0.106787412567695,1.72924735609633,1.24271716604159,0,0,0,0,0,0,0,0,0,1.77213635993397,0.854183854313742,4.256491644021,60185.6025888256,29496.3675908036,5546.45071072437,44.8249577193388,0,0.151649117541648,0.570930667089935,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,7.05118024373827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,90.3705197107186,0,12.7707087245721,4.92279274177812,1.26035848110859,3.8728061379962,1.45328081068666,22.8431072414647,0,0,0,0,0,0,0,0.0752103283492573,0,862.009954390101,0,0,0,9.79294976966722,7.81078098613847,8.88753224955092,3.93178023202222,561.743128861712,0.548257766857182,0.992422356778588,0,0,9053.36102634305,7760.08317392158,0.606965604236632,0.455324382702595,2.66107110487917,0,0,28.6152575832462,8.15582392179329,0,0,0.706437835654626,1.25692471932802,0,10.0447459256045,0,0,13672.3907528317,0.158013611732727,0,0,0,0,0,0,3.01159151174194,0,0,0.423387050190929,0,0,0,0,0,3.41370189950354,0,0.410651227424988,0,3.88568794447312,0,0,0,0,0.439762066981716,0.301925687133347,7.71741581079447,237.574242267802,0,0.735444965261716,0,8.83388102017254,102.778054513172,3.3812458206672,0,0,15.2120615617642,0,0,0,0,54.0448927302423,0,37.8416499519831,0,2220.12612920394,2.18175345170189,415.815096645105,0,0,0,0,0,0.126698501011437,0,0.26721740526556,0,0,0.227336094654718,3.21556956187414,101.98784105343,41.1663323530343,11.088167058851,0,1.29177819672012,5.21427600085206,0,2.22765053973577,0,0.217716747896961,0.342233301085281,0.740872583160463,4.87710996670199,0.332660356546013,0,0,0,0,7.03922827210363,1.1001729976458,0,0,2.41528552309231,0 | |||
|short_description=p1@TTR | |||
}} |
Revision as of 18:56, 20 January 2014
Short description: | p1@TTR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TTR_5end |
Coexpression cluster: | C160_medulla_Hepatocyte_retina_corpus_liver_pineal_cerebral |
Association with transcript: | 102bp_to_ENST00000432547, ENST00000541025, NM_000371, uc002kwx.3_5end |
EntrezGene: | TTR |
HGNC: | 12405 |
UniProt: | E7EW61F5H868E9KL36P02766 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.07e-08 | 12 |
visual pigment cell | 2.35e-07 | 4 |