FFCP PHASE1:Hg19::chr3:187957624..187957639,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4026 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6679 | |||
|TSSclassifier=strong | |||
|UniProt=C9JIY7 | |||
|association_with_transcript=-12bp_to_ENST00000457242_5end | |||
|coexpression_cluster_id=C1222 | |||
|description=CAGE_peak_28_at_LPP_5end | |||
|id=chr3:187957624..187957639,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000945;5.57e-10;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,5.57e-10,24;CL:0000826,5.57e-10,24 | |||
|ontology_enrichment_development_v019=UBERON:0001045;2.16e-26;1 | |||
|ontology_enrichment_disease=DOID:12603!2.20e-12!1;DOID:0060058!8.64e-11!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;6.42e-23;10 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,6.42e-23,10 | |||
|ontology_enrichment_uberon=UBERON:0004177!1.89e-14!7;UBERON:0001154!7.03e-13!1;UBERON:0001153!7.03e-13!1;UBERON:0002372!8.85e-13!1;UBERON:0001961!8.85e-13!1;UBERON:0001744!8.85e-13!1;UBERON:0001735!8.85e-13!1;UBERON:0000029!9.92e-13!1;UBERON:0007023!3.59e-12!115;UBERON:0002370!1.10e-11!4;UBERON:0005058!1.10e-11!4;UBERON:0009113!1.10e-11!4;UBERON:0003295!1.10e-11!4;UBERON:0005562!1.10e-11!4;UBERON:0001042!1.90e-10!10;UBERON:0009145!1.90e-10!10;UBERON:0003408!2.10e-10!10;UBERON:0000974!2.24e-10!10;UBERON:0006562!1.51e-09!11;UBERON:0003351!4.35e-08!6;UBERON:0000341!6.80e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001154;2.16e-26;1!UBERON:0001153;2.16e-26;1!UBERON:0009854;2.16e-26;1!UBERON:0002372;3.58e-26;1!UBERON:0001961;3.58e-26;1!UBERON:0001744;3.58e-26;1!UBERON:0001042;3.58e-26;1!UBERON:0001735;3.58e-26;1!UBERON:0000029;7.62e-26;1!UBERON:0006562;8.28e-14;2!UBERON:0000341;1.21e-13;2!UBERON:0002465;6.60e-11;10!UBERON:0009856;1.31e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,2.16e-26,1;UBERON:0001153,2.16e-26,1;UBERON:0001045,2.16e-26,1;UBERON:0002372,3.58e-26,1;UBERON:0001961,3.58e-26,1;UBERON:0001744,3.58e-26,1;UBERON:0001735,3.58e-26,1;UBERON:0000029,4.61e-26,1;UBERON:0000341,1.55e-13,2;UBERON:0002465,5.98e-11,10 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.4934401160603,1.56386155736164,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,32.0489342016131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9846640872478,0,1.09613338542806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29068207646083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0.0939839179798536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,0,0.0645889098360061,0.0620747142958579,0,0,0,0,0,12.6621859667425,0,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p28@LPP | |||
}} |
Revision as of 23:12, 21 January 2014
Short description: | p28@LPP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_LPP_5end |
Coexpression cluster: | C1222_appendix_Burkitt_tonsil_lymph_diffuse_lymphoma_salivary |
Association with transcript: | -12bp_to_ENST00000457242_5end |
EntrezGene: | LPP |
HGNC: | 6679 |
UniProt: | C9JIY7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 5.57e-10 | 24 |
pro-B cell | 5.57e-10 | 24 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 2.16e-26 | 1 |
caecum | 2.16e-26 | 1 |
midgut | 2.16e-26 | 1 |
tonsil | 3.58e-26 | 1 |
mucosa-associated lymphoid tissue | 3.58e-26 | 1 |
lymphoid tissue | 3.58e-26 | 1 |
tonsillar ring | 3.58e-26 | 1 |
lymph node | 4.61e-26 | 1 |
throat | 1.55e-13 | 2 |
lymphoid system | 5.98e-11 | 10 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 6.42e-23 | 10 |