FFCP PHASE1:Hg19::chr6:31540557..31540570,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4049 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6709 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-134bp_to_uc003nuf.2,uc003nug.2,uc003nuh.2,uc010jsr.2_5end | |||
|coexpression_cluster_id=C1110 | |||
|description=CAGE_peak_4_at_LTA_5end | |||
|id=chr6:31540557..31540570,+ | |||
|ontology_enrichment_celltype=CL:0000838!3.57e-26!52;CL:0000542!1.27e-25!53;CL:0000051!1.27e-25!53;CL:0000945!2.75e-21!24;CL:0000826!2.75e-21!24;CL:0000988!3.69e-12!182;CL:0000738!7.34e-12!140;CL:0002087!3.39e-11!119;CL:0000080!5.28e-11!6;CL:0002031!1.27e-10!124;CL:0000623!7.18e-10!3;CL:0000825!7.18e-10!3;CL:0002032!1.55e-09!165;CL:0000837!1.55e-09!165;CL:0000037!5.23e-09!172;CL:0000566!5.23e-09!172;CL:0000946!7.59e-08!1;CL:0000786!7.59e-08!1;CL:0000980!7.59e-08!1 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.58e-08;53!CL:0000084;2.39e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,1.23e-07,52;CL:0000542,1.66e-07,53;CL:0000051,1.66e-07,53;CL:0000084,2.43e-07,25;CL:0000827,2.43e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000051;2.58e-08;53 | |||
|ontology_enrichment_disease=DOID:0060058!8.40e-11!10;DOID:0060060!1.77e-08!1;DOID:0060061!1.77e-08!1;DOID:8691!1.77e-08!1;DOID:630!2.35e-08!1;DOID:0050177!2.35e-08!1;DOID:0050427!2.35e-08!1 | |||
|ontology_enrichment_disease_v019=DOID:0060060;9.91e-41;1!DOID:0060061;9.91e-41;1!DOID:8691;9.91e-41;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,9.91e-41,1;DOID:0060061,9.91e-41,1;DOID:8691,9.91e-41,1 | |||
|ontology_enrichment_uberon=UBERON:0001154!6.63e-08!1;UBERON:0001153!6.63e-08!1;UBERON:0002372!1.21e-07!1;UBERON:0001961!1.21e-07!1;UBERON:0001744!1.21e-07!1;UBERON:0001735!1.21e-07!1;UBERON:0002331!8.91e-07!10;UBERON:0000358!8.91e-07!10;UBERON:0000307!8.91e-07!10;UBERON:0000091!8.91e-07!10;UBERON:0000087!8.91e-07!10;UBERON:0007806!8.91e-07!10;UBERON:0008780!8.91e-07!10;UBERON:0005728!8.91e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;6.39e-17;10!UBERON:0000178;1.21e-11;15!UBERON:0000179;1.21e-11;15!UBERON:0000463;1.21e-11;15!UBERON:0000478;1.19e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,6.39e-17,10;UBERON:0000358,6.39e-17,10;UBERON:0000307,6.39e-17,10;UBERON:0000091,6.39e-17,10;UBERON:0000087,6.39e-17,10;UBERON:0007010,6.39e-17,10;UBERON:0007806,6.39e-17,10;UBERON:0008780,6.39e-17,10;UBERON:0005728,6.39e-17,10;UBERON:0000178,1.21e-11,15;UBERON:0000179,1.21e-11,15;UBERON:0000463,1.21e-11,15;UBERON:0000478,1.19e-07,24 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29902789771517,0.821005894499457,0.787107813136792,0.393364276848904,0,0,0,0,0,0.154934401160603,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612167784741805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0.167186495390678,0,0,0,0,0,0,0,0.384273959177026,0.520237390239513,0.657751618414705,0.552700035571697,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591092280605782,0,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0.861593638227486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,13.8391611620083,3.9680340812073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365377795142688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,8.39947062590706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.187967835959707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0.961705476909699 | |||
|short_description=p4@LTA | |||
}} |
Revision as of 11:00, 22 January 2014
Short description: | p4@LTA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_LTA_5end |
Coexpression cluster: | C1110_cord_mycosis_colon_embryonic_argyrophil_xeroderma_CD19 |
Association with transcript: | -134bp_to_uc003nuf.2, uc003nug.2, uc003nuh.2, uc010jsr.2_5end |
EntrezGene: | LTA |
HGNC: | 6709 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 1.23e-07 | 52 |
lymphocyte | 1.66e-07 | 53 |
common lymphoid progenitor | 1.66e-07 | 53 |
T cell | 2.43e-07 | 25 |
pro-T cell | 2.43e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 6.39e-17 | 10 |
blastocyst | 6.39e-17 | 10 |
blastula | 6.39e-17 | 10 |
bilaminar disc | 6.39e-17 | 10 |
inner cell mass | 6.39e-17 | 10 |
cleaving embryo | 6.39e-17 | 10 |
connecting stalk | 6.39e-17 | 10 |
inner cell mass derived epiblast | 6.39e-17 | 10 |
extraembryonic mesoderm | 6.39e-17 | 10 |
blood | 1.21e-11 | 15 |
haemolymphatic fluid | 1.21e-11 | 15 |
organism substance | 1.21e-11 | 15 |
extraembryonic structure | 1.19e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 9.91e-41 | 1 |
cutaneous T cell lymphoma | 9.91e-41 | 1 |
mycosis fungoides | 9.91e-41 | 1 |