FFCP PHASE1:Hg19::chr7:27213893..27213954,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3206 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5100 | |||
|TSSclassifier=strong | |||
|UniProt=P31260,Q5I0Y5 | |||
|association_with_transcript=0bp_to_ENST00000283921,ENST00000381834,NM_018951,uc011jzm.1_5end | |||
|description=CAGE_peak_1_at_HOXA10_5end | |||
|id=chr7:27213893..27213954,- | |||
|ontology_enrichment_celltype=CL:1000497!1.68e-08!18;CL:0002518!1.68e-08!18;CL:0002620!7.37e-08!23;CL:1000449!1.16e-07!16;CL:1000507!5.50e-07!12;CL:1000494!5.50e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:1000507;9.53e-10;10!CL:1000494;9.53e-10;10!CL:1000497;1.33e-09;17!CL:0002518;1.33e-09;17!CL:1000449;1.53e-09;15!CL:0002620;3.27e-08;23!CL:0002681;5.74e-07;12!CL:0002584;5.74e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,9.70e-10,10;CL:1000494,9.70e-10,10;CL:1000497,1.47e-09,17;CL:0002518,1.47e-09,17;CL:1000449,1.69e-09,15;CL:0002620,2.67e-08,23;CL:0002681,5.98e-07,12;CL:0002584,5.98e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001008!4.93e-17!45;UBERON:0006554!6.58e-17!44;UBERON:0003064!5.70e-12!37;UBERON:0000489!1.56e-11!32;UBERON:0002113!1.01e-10!27;UBERON:0003918!1.01e-10!27;UBERON:0005095!1.01e-10!27;UBERON:0007687!1.01e-10!27;UBERON:0000080!2.12e-08!18;UBERON:0002120!2.12e-08!18;UBERON:0004875!2.12e-08!18;UBERON:0005721!2.12e-08!18;UBERON:0005754!2.12e-08!18;UBERON:0007297!2.12e-08!18;UBERON:0006555!4.10e-08!17;UBERON:0005103!4.10e-08!17;UBERON:0000083!4.10e-08!17;UBERON:0009201!4.10e-08!17;UBERON:0004819!4.10e-08!17;UBERON:0006553!4.10e-08!17;UBERON:0003074!4.10e-08!17;UBERON:0003060!4.10e-08!17;UBERON:0004876!4.36e-08!20;UBERON:0004211!1.16e-07!16;UBERON:0001285!1.16e-07!16;UBERON:0007684!1.16e-07!16;UBERON:0003220!1.16e-07!16;UBERON:0004208!1.16e-07!16;UBERON:0009773!5.50e-07!12;UBERON:0001231!5.50e-07!12;UBERON:0004810!5.50e-07!12;UBERON:0001046!7.70e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.23e-13;30!UBERON:0001008;2.23e-13;30!UBERON:0000489;3.29e-12;29!UBERON:0002113;7.95e-12;24!UBERON:0011143;7.95e-12;24!UBERON:0004211;9.53e-10;10!UBERON:0009773;9.53e-10;10!UBERON:0001231;9.53e-10;10!UBERON:0004810;9.53e-10;10!UBERON:0006555;1.53e-09;15!UBERON:0004819;1.53e-09;15!UBERON:0001285;1.53e-09;15!UBERON:0007684;1.53e-09;15!UBERON:0004905;1.54e-07;8!UBERON:0000982;1.54e-07;8!UBERON:0004770;1.54e-07;8!UBERON:0001225;5.74e-07;12!UBERON:0008987;5.74e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,3.50e-16,47;UBERON:0001008,1.36e-15,48;UBERON:0000489,4.59e-13,31;UBERON:0002113,1.24e-12,26;UBERON:0003918,1.24e-12,26;UBERON:0011143,1.24e-12,26;UBERON:0005095,1.24e-12,26;UBERON:0007687,1.24e-12,26;UBERON:0006555,4.59e-10,16;UBERON:0004819,4.59e-10,16;UBERON:0004810,9.70e-10,10;UBERON:0004211,1.69e-09,15;UBERON:0009773,1.69e-09,15;UBERON:0001231,1.69e-09,15;UBERON:0001285,1.69e-09,15;UBERON:0007684,1.69e-09,15;UBERON:0004208,1.69e-09,15;UBERON:0004905,1.21e-07,8;UBERON:0000982,1.21e-07,8;UBERON:0004770,1.21e-07,8;UBERON:0003064,5.72e-07,28;UBERON:0001225,5.98e-07,12;UBERON:0008987,5.98e-07,12 | |||
|phase1_expression=1.45342703416445,1.2846031433459,0.422863212287913,4.00293193412522,0,0,2.53299878168311,3.79031924056099,12.5369101535922,0,0,0,0,6.68338305984252,5.63375538737457,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0,0.464448369948228,0,0,0,0,0,2.64240395401362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.68152568894461,1.31692042387539,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.22878304769133,9.02408239144601,11.2980284789442,0.795285947051099,3.89307896242109,0,0,0,5.37014209540622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.417989933073621,0.516833518338658,0.71153252537342,0,1.20848795132744,0,0.24406205754817,0,0,4.28638695763583,1.57170560838319,2.36484109014977,3.06633274931766,3.79706263827252,2.74802615895611,0,0,0,2.98183171017191,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,2.98897361103602,0.704606991862589,1.61872944368132,0.842704840213491,0,0,0,0,0,0.910161361938026,4.31170885089743,0,0,0,0,0,0,0,4.30535125653269,7.68806599746843,4.87443372666992,5.10154863343484,4.225153698776,4.3798891807757,5.58350568994769,4.38818463827292,3.41029518064195,7.82544700156755,11.2300876343605,0,5.68015348026583,6.44813428656898,7.12154487704048,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,2.48444280083672,2.36018566109342,0.723033089650446,2.97793726377464,2.17879444092406,2.13543557199987,2.83145747136345,2.35465758150415,1.15424147083917,0,0,0,0,0,0,1.18157981336281,0,0.737930631258681,0,0,0,0.100528972411631,0,0,0,0,0,0,1.29929802984966,1.38895653772983,0.761016608938393,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0.288239906833923,0,0.063497894292169,0,0,1.71072446022705,0.308482478109971,0,0,0,0,0,1.80980402060889,3.57656445851882,4.22651376278,7.44626726437637,11.4408180602503,16.7184793270392,0,9.05835408654738,0,21.1622426102663,12.3486050517115,2.28015329005615,0,2.37585561880029,0,1.74306691720059,0,0,0,0,0,0,0,0.579125226670317,2.4657158706046,0.358121926479791,0.896681151948218,0.197030760201927,0,0,0,0,0,0,0,0,0,0,10.551468287846,8.00272833695483,2.44138521329762,0,0,0,0,9.93122129101472,13.6444502433591,5.17365356462525,7.97070718242524,5.53107505625109,7.55887445872321,0,0,0,0,0,0,0,0.30239029332968,1.98486246255021,1.2276957863045,1.40330047216537,0.128139149255701,0.511707249066704,0.160853921143607,0,2.7757744884478,1.77561725313127,1.64254312027618,0,2.09178681227927,1.45031339509947,1.00253235151642,0.920809889358963,5.39627906373652,6.55528204824181,4.98272776845812,4.06079651616671,3.77375151811632,10.980896768476,16.0753147118587,6.01644284689391,2.27466768141793,0.340187410553031,5.82972973475776,6.16909010761157,15.7148933775435,14.5490034417907,2.80363900349542,7.47968408035852,10.074363962498,0,0,0,0,0,0.824328093181778,7.87497397437753,5.5281364946794,0,0,0,3.67348729510063,0.462145851343933,0.15350367472613,0.689182862422653,12.0310674252466,4.20548412351263,1.36362603865761,2.31483292681517,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0,0,4.49681143958287,7.41249980287348,5.89062011728432,0,0,0,0,0.974853958525138,0,2.32049849393576,3.81794666275024,0,0,0,0,0,0,0.202910376962704,5.26699946769575,1.40847801266121,5.30622003154991,5.01070109166918,0.7133421029625,1.41904425628239,10.5553817648832,6.91519275215794,0,0,0,0,0,0.470719003883896,0.86101074534246,1.68471475667626,1.33029046061003,2.06751060186264,0,0,0,0,0,0,0,0,5.23437948524618,0,0.735120647943095,0,0,0,0,13.7709766288643,31.7898914419729,4.86849240264931,0,9.82790123397106,6.84704037099577,0,15.038068625404,20.3150133361924,6.90528722945908,3.43059502224781,24.2732355483486,35.7245558545995,17.2054828012736,13.8679186893298,16.5180650294789,16.8033762045755,1.39203086947621,0,0,0,0,2.8071081061233,4.9812780952444,0,0,1.42068073403207,0,0.890894042497916,0,0,0,0.222617410045812,0,0.211125408127993,0.19924798825107,1.65770349318689,16.6275613583822,0,0,0,0,0,18.4166053281674,10.6534878087888,0,0,0,0,0,0,0,0,1.70690172428249,0,0,19.305628901522,3.2076507472158,25.1756242653274,0,0,0,0,0,0,0,0.975966209950223,26.0861376327872,0,0,0,0.217294743844016,0.638002319463839,5.86224597771919,0,0,0,0,0,0,0,0,0.476809736941136,0,10.2836669140263,0.141353071433941,0,8.95735737970654,9.37650183735395,9.16545217400438,0.593042257361244,1.11207545051853,1.35748534357092,0,0.802577647298789,0,0.364909578431332,0,0,2.36750641709634,0,0,0.063186579628488,6.76455387365216,33.8023503955026,0,0,0,0,6.54601955868523,0,0.520679215005393,0,0.522355239482415,3.4945333648406,2.75177651954586,1.9351266257817,1.75414361006845,1.39596276990456,0,0.0882561266915003,0,0,0,0,2.73771935828724,0,0,0.799238438328521,0,0,11.3252698588897,0,0,0.707082103850386,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,1.19807400299395,0,0,0,0,0,0,0,0,0.393709926058995,0,0,0,0,0,0,0,0,0,0,2.04894838977915,22.0309270166992,0,0,0.767660789277781,0,0,0,7.05899482279827,2.5926644736038,5.55198512185996,0,0.328370082997356,2.89659637035217,0,0,0,0,0,0,0,0,0,0,0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| |||
|short_description=p1@HOXA10 | |||
}} |
Revision as of 16:13, 22 January 2014
Short description: | p1@HOXA10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_HOXA10_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000283921, ENST00000381834, NM_018951, uc011jzm.1_5end |
EntrezGene: | HOXA10 |
HGNC: | 5100 |
UniProt: | P31260Q5I0Y5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 9.70e-10 | 10 |
nephron tubule epithelial cell | 9.70e-10 | 10 |
kidney cell | 1.47e-09 | 17 |
kidney epithelial cell | 1.47e-09 | 17 |
epithelial cell of nephron | 1.69e-09 | 15 |
skin fibroblast | 2.67e-08 | 23 |
kidney cortical cell | 5.98e-07 | 12 |
renal cortical epithelial cell | 5.98e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 3.50e-16 | 47 |
renal system | 1.36e-15 | 48 |
cavitated compound organ | 4.59e-13 | 31 |
kidney | 1.24e-12 | 26 |
kidney mesenchyme | 1.24e-12 | 26 |
upper urinary tract | 1.24e-12 | 26 |
kidney rudiment | 1.24e-12 | 26 |
kidney field | 1.24e-12 | 26 |
excretory tube | 4.59e-10 | 16 |
kidney epithelium | 4.59e-10 | 16 |
nephron tubule epithelium | 9.70e-10 | 10 |
nephron epithelium | 1.69e-09 | 15 |
renal tubule | 1.69e-09 | 15 |
nephron tubule | 1.69e-09 | 15 |
nephron | 1.69e-09 | 15 |
uriniferous tubule | 1.69e-09 | 15 |
nephrogenic mesenchyme | 1.69e-09 | 15 |
articulation | 1.21e-07 | 8 |
skeletal joint | 1.21e-07 | 8 |
articular system | 1.21e-07 | 8 |
intermediate mesoderm | 5.72e-07 | 28 |
cortex of kidney | 5.98e-07 | 12 |
renal parenchyma | 5.98e-07 | 12 |