CL:0000827: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{CL | {{CL | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage." [GOC:add, ISBN:0781735149] | ||
|derives_from= | |derives_from= | ||
|develops_from=CL:0000051 | |develops_from=CL:0000051 | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=CL:0000827 | |||
|is_a=CL:0000838 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=pro-T cell | |||
|namespace=cell;;efo | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl | ||
| | |subset= | ||
| | |synonym="DN1 cell" NARROW [];;"DN1 thymocyte" NARROW [];;"pro-T lymphocyte" EXACT [];;"progenitor T cell" EXACT [];;"TN1 cell" NARROW [] | ||
|union_of= | |||
|xref= | |||
}} | }} |
Revision as of 10:22, 12 September 2014
Name: | pro-T cell |
---|---|
Namespace: | cell;;efo |
Definition: | "A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage." [GOC:add, ISBN:0781735149] |
Synonyms: |
"DN1 cell" NARROW [] "DN1 thymocyte" NARROW [] "pro-T lymphocyte" EXACT [] "progenitor T cell" EXACT [] "TN1 cell" NARROW [] |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | CL:0000838(lymphoid lineage restricted progenitor cell) |
---|---|
develops_from: | CL:0000051(common lymphoid progenitor) |
Children
is a: | CL:0000894 (DN1 thymic pro-T cell),CL:0002425 (early T lineage precursor) |
---|---|
develops from: | CL:0000084 (T cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000827 (pro-T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data