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{{CL
{{CL
|id=CL:0000827
|alt_id=
|name=pro-T cell
|namespace=cell;;efo
|def="A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage." [GOC:add, ISBN:0781735149]
|xref=
|is_a=CL:0000838
|synonym="DN1 cell" NARROW [];;"DN1 thymocyte" NARROW [];;"pro-T lymphocyte" EXACT [];;"progenitor T cell" EXACT [];;"TN1 cell" NARROW []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage." [GOC:add, ISBN:0781735149]
|subset=
|derives_from=
|derives_from=
|develops_from=CL:0000051
|develops_from=CL:0000051
|disjoint_from=
|has_quality=
|has_quality=
|id=CL:0000827
|is_a=CL:0000838
|is_obsolete=
|located_in=
|located_in=
|name=pro-T cell
|namespace=cell;;efo
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="DN1 cell" NARROW [];;"DN1 thymocyte" NARROW [];;"pro-T lymphocyte" EXACT [];;"progenitor T cell" EXACT [];;"TN1 cell" NARROW []
|union_of=
|xref=
}}
}}

Revision as of 10:22, 12 September 2014

Name:pro-T cell
Namespace:cell;;efo
Definition:"A lymphoid progenitor cell of the T cell lineage, with some lineage specific marker expression, but not yet fully committed to the T cell lineage." [GOC:add, ISBN:0781735149]
Synonyms: "DN1 cell" NARROW []
"DN1 thymocyte" NARROW []
"pro-T lymphocyte" EXACT []
"progenitor T cell" EXACT []
"TN1 cell" NARROW []


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000838(lymphoid lineage restricted progenitor cell)
develops_from:CL:0000051(common lymphoid progenitor)



Children


is a:CL:0000894 (DN1 thymic pro-T cell),CL:0002425 (early T lineage precursor)
develops from:CL:0000084 (T cell)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000827 (pro-T cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data