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{{UBERON
{{UBERON
|id=UBERON:0000164
|alt_id=
|name=primitive urogenital sinus
|namespace=
|def="Part of the human body only present in the development of the urinary and reproductive organs. It is the ventral part of the cloaca, formed after the cloaca separates from the rectum. It eventually becomes, among other things, the bladder[WP]. ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females[MP]." [Wikipedia:Definitive_urogenital_sinus]
|xref=EHDAA2:0004060;;EHDAA:5029;;EHDAA:5919;;EMAPA:17211;;EMAPA:17379;;http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png;;ncithesaurus:Urogenital_Sinus;;SCTID:50961009;;VHOG:0000414
|is_a=UBERON:0005423
|synonym="fetal UGS" EXACT [PMID:18977204];;"UGS" EXACT [MP:0010116];;"urogenital sinus" EXACT [MP:0010116]
|comment=Note that the term "urogenital sinus" may refer to the primitive urogenital sinus present as a transient developmental structure in most mammals or it may refer to a condition in which an unseptated cloaca persists in animals longer than normal[MP]
|comment=Note that the term "urogenital sinus" may refer to the primitive urogenital sinus present as a transient developmental structure in most mammals or it may refer to a condition in which an unseptated cloaca persists in animals longer than normal[MP]
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Part of the human body only present in the development of the urinary and reproductive organs. It is the ventral part of the cloaca, formed after the cloaca separates from the rectum. It eventually becomes, among other things, the bladder[WP]. ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females[MP]." [Wikipedia:Definitive_urogenital_sinus]
|subset=
|derives_from=
|derives_from=
|develops_from=UBERON:0003064
|develops_from=UBERON:0003064
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0000164
|is_a=UBERON:0005423
|is_obsolete=
|located_in=
|located_in=
|name=primitive urogenital sinus
|namespace=
|obo_creation_date=
|part_of=UBERON:0000163;;UBERON:0001008
|part_of=UBERON:0000163;;UBERON:0001008
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="fetal UGS" EXACT [PMID:18977204];;"UGS" EXACT [MP:0010116];;"urogenital sinus" EXACT [MP:0010116]
|union_of=
|xref=EHDAA2:0004060;;EHDAA:5029;;EHDAA:5919;;EMAPA:17211;;EMAPA:17379;;http://upload.wikimedia.org/wikipedia/commons/6/6d/Gray1109.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/6/6d/Gray1109.png/200px-Gray1109.png;;ncithesaurus:Urogenital_Sinus;;SCTID:50961009;;VHOG:0000414
}}
}}

Revision as of 10:52, 12 September 2014

Name:primitive urogenital sinus
Definition:"Part of the human body only present in the development of the urinary and reproductive organs. It is the ventral part of the cloaca, formed after the cloaca separates from the rectum. It eventually becomes, among other things, the bladder[WP]. ventral part of the cloaca remaining after septation of the rectum, which further develops into part of the bladder, part of the prostatic part of the male urethra and the urethra and vestibule in females[MP]." [Wikipedia:Definitive_urogenital_sinus]
Xrefs:
links:

EHDAA2:0004060
EHDAA:5029
EHDAA:5919
EMAPA:17211
EMAPA:17379
[ Gray1109.png Gray1109.png]
[ 200px-Gray1109.png 200px-Gray1109.png]
ncithesaurus:Urogenital_Sinus
SCTID:50961009

VHOG:0000414
Synonyms: "fetal UGS" EXACT [PMID:18977204]
"UGS" EXACT [MP:0010116]
"urogenital sinus" EXACT [MP:0010116]
Comments:Note that the term "urogenital sinus" may refer to the primitive urogenital sinus present as a transient developmental structure in most mammals or it may refer to a condition in which an unseptated cloaca persists in animals longer than normal[MP]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0003064(intermediate mesoderm)
part_of:UBERON:0000163(embryonic cloaca),UBERON:0001008(renal system)



Children

develops from:UBERON:0000057 (urethra),UBERON:0000996 (vagina),UBERON:0001255 (urinary bladder)
part of:UBERON:0004902 (urogenital sinus epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000164 (primitive urogenital sinus), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
4.58e-44FFCP PHASE1:Mm9::chr1:132699659..132699668,+#_2e62b86d954eb258a2baca8438a5be9ap@chr1:132699659..132699668, +
4.58e-44FFCP PHASE2:Mm9::chr1:132699659..132699668,+#_2e62b86d954eb258a2baca8438a5be9ap@chr1:132699659..132699668, +
1.7e-39FFCP PHASE1:Mm9::chr9:96425825..96425834,-#_178be055c13fc59c2ed27ceadec4655cp@chr9:96425825..96425834, -
1.7e-39FFCP PHASE1:Mm9::chr7:114836650..114836663,+#_178be055c13fc59c2ed27ceadec4655cp@chr7:114836650..114836663, +
1.7e-39FFCP PHASE2:Mm9::chr9:96425825..96425834,-#_178be055c13fc59c2ed27ceadec4655cp@chr9:96425825..96425834, -
1.7e-39FFCP PHASE1:Mm9::chr9:96425983..96425992,+#_178be055c13fc59c2ed27ceadec4655cp@chr9:96425983..96425992, +
1.7e-39FFCP PHASE2:Mm9::chr9:96425983..96425992,+#_178be055c13fc59c2ed27ceadec4655cp@chr9:96425983..96425992, +
1.7e-39FFCP PHASE2:Mm9::chr15:58237385..58237400,+#_178be055c13fc59c2ed27ceadec4655cp@chr15:58237385..58237400, +
1.7e-39FFCP PHASE1:Mm9::chr15:58237385..58237400,+#_178be055c13fc59c2ed27ceadec4655cp@chr15:58237385..58237400, +
1.7e-39FFCP PHASE2:Mm9::chr7:114836650..114836663,+#_178be055c13fc59c2ed27ceadec4655cp@chr7:114836650..114836663, +
2.66e-39FFCP PHASE2:Mm9::chr6:124520322..124520333,+#_fd6efb8c73d9ef39f29757458b7ad5b9p3@C1rb
2.66e-39FFCP PHASE2:Mm9::chr6:124520368..124520379,+#_fd6efb8c73d9ef39f29757458b7ad5b9p4@C1rb
2.66e-39FFCP PHASE2:Mm9::chr7:28922549..28922561,+#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr7:28922549..28922561, +
2.66e-39FFCP PHASE1:Mm9::chr9:120464717..120464741,+#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr9:120464717..120464741, +
2.66e-39FFCP PHASE2:Mm9::chr9:120464717..120464741,+#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr9:120464717..120464741, +
2.66e-39FFCP PHASE2:Mm9::chr7:28914450..28914477,+#_fd6efb8c73d9ef39f29757458b7ad5b9p2@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr6:42547567..42547580,-#_fd6efb8c73d9ef39f29757458b7ad5b9p4@Fam115e
2.66e-39FFCP PHASE2:Mm9::chr7:28924794..28924814,+#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr7:28924794..28924814, +
2.66e-39FFCP PHASE1:Mm9::chr6:124520322..124520333,+#_fd6efb8c73d9ef39f29757458b7ad5b9p3@C1rb
2.66e-39FFCP PHASE1:Mm9::chr9:120464756..120464765,+#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr9:120464756..120464765, +
2.66e-39FFCP PHASE2:Mm9::chr9:120464756..120464765,+#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr9:120464756..120464765, +
2.66e-39FFCP PHASE1:Mm9::chr9:36337031..36337049,-#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr9:36337031..36337049, -
2.66e-39FFCP PHASE2:Mm9::chr5:120136866..120136874,+#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr5:120136866..120136874, +
2.66e-39FFCP PHASE2:Mm9::chr7:28914478..28914498,+#_fd6efb8c73d9ef39f29757458b7ad5b9p3@9530053A07Rik
2.66e-39FFCP PHASE1:Mm9::chr7:28914450..28914477,+#_fd6efb8c73d9ef39f29757458b7ad5b9p2@9530053A07Rik
2.66e-39FFCP PHASE2:Mm9::chr7:28900349..28900364,-#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr7:28900349..28900364, -
2.66e-39FFCP PHASE1:Mm9::chr5:120136866..120136874,+#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr5:120136866..120136874, +
2.66e-39FFCP PHASE1:Mm9::chr6:42547567..42547580,-#_fd6efb8c73d9ef39f29757458b7ad5b9p4@Fam115e
2.66e-39FFCP PHASE1:Mm9::chr7:28922549..28922561,+#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr7:28922549..28922561, +
2.66e-39FFCP PHASE2:Mm9::chr19:11353922..11353934,-#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr19:11353922..11353934, -
2.66e-39FFCP PHASE1:Mm9::chr7:55028037..55028075,+#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr7:55028037..55028075, +
2.66e-39FFCP PHASE1:Mm9::chr7:28914478..28914498,+#_fd6efb8c73d9ef39f29757458b7ad5b9p3@9530053A07Rik
2.66e-39FFCP PHASE1:Mm9::chr7:28924794..28924814,+#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr7:28924794..28924814, +
2.66e-39FFCP PHASE1:Mm9::chr7:28900349..28900364,-#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr7:28900349..28900364, -
2.66e-39FFCP PHASE2:Mm9::chr7:55028037..55028075,+#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr7:55028037..55028075, +
2.66e-39FFCP PHASE1:Mm9::chr6:124520368..124520379,+#_fd6efb8c73d9ef39f29757458b7ad5b9p4@C1rb
2.66e-39FFCP PHASE2:Mm9::chr9:36337031..36337049,-#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr9:36337031..36337049, -
2.66e-39FFCP PHASE1:Mm9::chr19:11353922..11353934,-#_fd6efb8c73d9ef39f29757458b7ad5b9p@chr19:11353922..11353934, -
2.02e-32FFCP PHASE2:Hg19::chr10:91567053..91567066,+#_7a12b6ea903cca3ae7be9e7cc3fc8288p@chr10:91567053..91567066, +
2.02e-32FFCP PHASE1:Hg19::chr10:91567053..91567066,+#_7a12b6ea903cca3ae7be9e7cc3fc8288p@chr10:91567053..91567066, +
2.02e-32FFCP PHASE2:Hg19::chr10:91567075..91567084,+#_7a12b6ea903cca3ae7be9e7cc3fc8288p@chr10:91567075..91567084, +
2.02e-32FFCP PHASE1:Hg19::chr10:91567075..91567084,+#_7a12b6ea903cca3ae7be9e7cc3fc8288p@chr10:91567075..91567084, +
4.03e-30FFCP PHASE2:Mm9::chr7:114836670..114836681,+#_ae4ac6b0cfa3020978e4db30f3e236c5p@chr7:114836670..114836681, +
4.03e-30FFCP PHASE1:Mm9::chr7:31397780..31397790,-#_ae4ac6b0cfa3020978e4db30f3e236c5p3@Upk1a
4.03e-30FFCP PHASE1:Mm9::chr3:92288406..92288413,-#_ae4ac6b0cfa3020978e4db30f3e236c5p@chr3:92288406..92288413, -
4.03e-30FFCP PHASE2:Mm9::chr14:32955207..32955211,+#_ae4ac6b0cfa3020978e4db30f3e236c5p1@Msmb
4.03e-30FFCP PHASE1:Mm9::chr7:114836670..114836681,+#_ae4ac6b0cfa3020978e4db30f3e236c5p@chr7:114836670..114836681, +
4.03e-30FFCP PHASE1:Mm9::chr14:32955207..32955211,+#_ae4ac6b0cfa3020978e4db30f3e236c5p1@Msmb
4.03e-30FFCP PHASE2:Mm9::chr7:31397780..31397790,-#_ae4ac6b0cfa3020978e4db30f3e236c5p3@Upk1a
4.03e-30FFCP PHASE2:Mm9::chr3:92288406..92288413,-#_ae4ac6b0cfa3020978e4db30f3e236c5p@chr3:92288406..92288413, -
5.61e-30FFCP PHASE2:Mm9::chr15:36485068..36485103,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr15:36485068..36485103, -
5.61e-30FFCP PHASE1:Mm9::chr15:84847637..84847642,+#_8b5ebd5c703008fc2e9992debd1f8e14p3@Upk3a
5.61e-30FFCP PHASE2:Mm9::chr4:152405146..152405150,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr4:152405146..152405150, +
5.61e-30FFCP PHASE2:Mm9::chr6:54242736..54242738,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr6:54242736..54242738, -
5.61e-30FFCP PHASE1:Mm9::chr11:100107430..100107473,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr11:100107430..100107473, -
5.61e-30FFCP PHASE2:Mm9::chr6:42551615..42551622,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr6:42551615..42551622, -
5.61e-30FFCP PHASE2:Mm9::chr15:101506878..101506897,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr15:101506878..101506897, -
5.61e-30FFCP PHASE1:Mm9::chr6:42543996..42544003,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr6:42543996..42544003, -
5.61e-30FFCP PHASE1:Mm9::chr12:89223836..89223840,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr12:89223836..89223840, +
5.61e-30FFCP PHASE1:Mm9::chr18:73894503..73894506,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr18:73894503..73894506, -
5.61e-30FFCP PHASE1:Mm9::chr16:20188882..20188884,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr16:20188882..20188884, +
5.61e-30FFCP PHASE1:Mm9::chr10:61188929..61188936,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr10:61188929..61188936, +
5.61e-30FFCP PHASE2:Mm9::chr6:42543996..42544003,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr6:42543996..42544003, -
5.61e-30FFCP PHASE1:Mm9::chr11:89595040..89595050,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr11:89595040..89595050, -
5.61e-30FFCP PHASE1:Mm9::chrX:75093387..75093390,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chrX:75093387..75093390, -
5.61e-30FFCP PHASE1:Mm9::chr6:42548966..42548969,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr6:42548966..42548969, -
5.61e-30FFCP PHASE1:Mm9::chr4:121069181..121069190,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr4:121069181..121069190, -
5.61e-30FFCP PHASE2:Mm9::chr18:44429795..44429800,+#_8b5ebd5c703008fc2e9992debd1f8e14p3@Npy6r
5.61e-30FFCP PHASE1:Mm9::chr1:73048139..73048141,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr1:73048139..73048141, +
5.61e-30FFCP PHASE2:Mm9::chr16:20188882..20188884,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr16:20188882..20188884, +
5.61e-30FFCP PHASE1:Mm9::chr6:42547401..42547411,-#_8b5ebd5c703008fc2e9992debd1f8e14p9@Fam115e
5.61e-30FFCP PHASE1:Mm9::chr6:122422716..122422728,-#_8b5ebd5c703008fc2e9992debd1f8e14p15@Rimklb
5.61e-30FFCP PHASE2:Mm9::chr5:86802562..86802592,-#_8b5ebd5c703008fc2e9992debd1f8e14p6@Tmprss11d
5.61e-30FFCP PHASE2:Mm9::chr7:123747566..123747567,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr7:123747566..123747567, +
5.61e-30FFCP PHASE1:Mm9::chr15:101506516..101506534,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr15:101506516..101506534, -
5.61e-30FFCP PHASE2:Mm9::chr11:100107430..100107473,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr11:100107430..100107473, -
5.61e-30FFCP PHASE2:Mm9::chr9:122970904..122970907,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr9:122970904..122970907, -
5.61e-30FFCP PHASE1:Mm9::chr6:42535984..42535996,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr6:42535984..42535996, -
5.61e-30FFCP PHASE2:Mm9::chr18:73894503..73894506,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr18:73894503..73894506, -
5.61e-30FFCP PHASE2:Mm9::chr12:114453231..114453265,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr12:114453231..114453265, -
5.61e-30FFCP PHASE1:Mm9::chr16:20186583..20186592,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr16:20186583..20186592, +
5.61e-30FFCP PHASE2:Mm9::chr6:42535984..42535996,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr6:42535984..42535996, -
5.61e-30FFCP PHASE2:Mm9::chr9:36341608..36341609,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr9:36341608..36341609, -
5.61e-30FFCP PHASE1:Mm9::chr15:36485068..36485103,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr15:36485068..36485103, -
5.61e-30FFCP PHASE1:Mm9::chr9:36300946..36300953,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr9:36300946..36300953, -
5.61e-30FFCP PHASE1:Mm9::chr6:42535216..42535225,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr6:42535216..42535225, +
5.61e-30FFCP PHASE2:Mm9::chr6:42535216..42535225,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr6:42535216..42535225, +
5.61e-30FFCP PHASE1:Mm9::chr4:102102677..102102684,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr4:102102677..102102684, +
5.61e-30FFCP PHASE1:Mm9::chr2:36098306..36098309,+#_8b5ebd5c703008fc2e9992debd1f8e14p5@Ptgs1
5.61e-30FFCP PHASE1:Mm9::chr11:100107526..100107540,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr11:100107526..100107540, -
5.61e-30FFCP PHASE2:Mm9::chr18:64859665..64859669,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr18:64859665..64859669, +
5.61e-30FFCP PHASE2:Mm9::chr6:42551847..42551862,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr6:42551847..42551862, -
5.61e-30FFCP PHASE2:Mm9::chr15:101506963..101506974,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr15:101506963..101506974, +
5.61e-30FFCP PHASE2:Mm9::chr3:95514619..95514622,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr3:95514619..95514622, -
5.61e-30FFCP PHASE1:Mm9::chr1:72981474..72981498,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr1:72981474..72981498, +
5.61e-30FFCP PHASE2:Mm9::chr16:20186583..20186592,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr16:20186583..20186592, +
5.61e-30FFCP PHASE2:Mm9::chr6:122422716..122422728,-#_8b5ebd5c703008fc2e9992debd1f8e14p15@Rimklb
5.61e-30FFCP PHASE2:Mm9::chr19:58073599..58073605,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr19:58073599..58073605, +
5.61e-30FFCP PHASE1:Mm9::chr7:31388578..31388584,-#_8b5ebd5c703008fc2e9992debd1f8e14p@chr7:31388578..31388584, -
5.61e-30FFCP PHASE1:Mm9::chr2:137020090..137020093,+#_8b5ebd5c703008fc2e9992debd1f8e14p@chr2:137020090..137020093, +

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