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{{UBERON
{{UBERON
|id=UBERON:0007375
|alt_id=
|name=primary or secondary palate
|namespace=
|def="Either the primary or secondary palate" [UBERON:cjm]
|xref=AAO:0010535
|is_a=UBERON:0000061
|synonym="palate" EXACT [];;"palatum" EXACT INCONSISTENT []
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Either the primary or secondary palate" [UBERON:cjm]
|subset=grouping_class
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0007375
|is_a=UBERON:0000481
|is_obsolete=
|located_in=
|located_in=
|name=primary or secondary palate
|namespace=
|obo_creation_date=
|part_of=UBERON:0000033
|part_of=UBERON:0000033
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Roof of the mouth lined with ciliated epithelium.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Roof of the mouth lined with ciliated epithelium.[AAO]" xsd:string
|is_obsolete=
|subset=grouping_class
|preceded_by=
|synonym="palate" EXACT [];;"palatum" EXACT INCONSISTENT []
|union_of=
|xref=AAO:0010535
}}
}}

Revision as of 11:43, 12 September 2014

Name:primary or secondary palate
Definition:"Either the primary or secondary palate" [UBERON:cjm]
Xrefs:
links:
AAO:0010535
Synonyms: "palate" EXACT []
"palatum" EXACT INCONSISTENT []
Subset: grouping_class

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000481(multi-tissue structure)
part_of:UBERON:0000033(head)



Children

is a:UBERON:0005620 (primary palate)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007375 (primary or secondary palate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_f0367b0ecb3e205773bd3f98c7ad5e20p14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_f0367b0ecb3e205773bd3f98c7ad5e20p14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_2b24e17463255fbd45dab940947f814ep11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_2b24e17463255fbd45dab940947f814ep12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_2b24e17463255fbd45dab940947f814ep@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_2b24e17463255fbd45dab940947f814ep13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_2b24e17463255fbd45dab940947f814ep11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_2b24e17463255fbd45dab940947f814ep13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_2b24e17463255fbd45dab940947f814ep@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_2b24e17463255fbd45dab940947f814ep12@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_a01fe4f58f21ab364750af64cd8d7521p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_a01fe4f58f21ab364750af64cd8d7521p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_a01fe4f58f21ab364750af64cd8d7521p14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_a01fe4f58f21ab364750af64cd8d7521p@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_ccae960e7bc61b5e081fb2129790b7d7p@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_ccae960e7bc61b5e081fb2129790b7d7p@chr4:151505582..151505614, +
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_ad41000988d7759f2e7c22bd22507b3cp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_ad41000988d7759f2e7c22bd22507b3cp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_ad41000988d7759f2e7c22bd22507b3cp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_ad41000988d7759f2e7c22bd22507b3cp9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_ad41000988d7759f2e7c22bd22507b3cp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_ad41000988d7759f2e7c22bd22507b3cp9@C17orf67
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_87f5c14479ed13e18ab0cb8009dbe53ep@chr8:57802672..57802682, -
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_87f5c14479ed13e18ab0cb8009dbe53ep@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_afdf9b96367b5684bf787bb4b592e587p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_afdf9b96367b5684bf787bb4b592e587p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_afdf9b96367b5684bf787bb4b592e587p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_afdf9b96367b5684bf787bb4b592e587p7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_afdf9b96367b5684bf787bb4b592e587p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_afdf9b96367b5684bf787bb4b592e587p1@AK123925
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_50bda54c014fd7cc45ee8ef979efe88fp@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_50bda54c014fd7cc45ee8ef979efe88fp23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_50bda54c014fd7cc45ee8ef979efe88fp@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_50bda54c014fd7cc45ee8ef979efe88fp23@FLT1
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_4aec8fa41226b670d288bae575cd0bc8p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_4aec8fa41226b670d288bae575cd0bc8p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_4aec8fa41226b670d288bae575cd0bc8p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_4aec8fa41226b670d288bae575cd0bc8p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_4aec8fa41226b670d288bae575cd0bc8p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_4aec8fa41226b670d288bae575cd0bc8p@chr8:57354143..57354152, +
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_36ce2d803b7e7b56d8d06074dc2c9136p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_36ce2d803b7e7b56d8d06074dc2c9136p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_36ce2d803b7e7b56d8d06074dc2c9136p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_36ce2d803b7e7b56d8d06074dc2c9136p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_36ce2d803b7e7b56d8d06074dc2c9136p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_36ce2d803b7e7b56d8d06074dc2c9136p2@TAS1R1
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_e3c7af59ae19cc04e16e700663ff3629p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_e3c7af59ae19cc04e16e700663ff3629p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_e3c7af59ae19cc04e16e700663ff3629p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_e3c7af59ae19cc04e16e700663ff3629p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_8f339128fdf7bfa0d8710c2e4a70b8eep@chr9:125165007..125165016, +
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_8f339128fdf7bfa0d8710c2e4a70b8eep@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_8f339128fdf7bfa0d8710c2e4a70b8eep@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_8f339128fdf7bfa0d8710c2e4a70b8eep@chr6:46190219..46190230, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_f8541a4b9ef00c8dfc64cd6ea5cfac01p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_f8541a4b9ef00c8dfc64cd6ea5cfac01p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_f8541a4b9ef00c8dfc64cd6ea5cfac01p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_f8541a4b9ef00c8dfc64cd6ea5cfac01p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_f8541a4b9ef00c8dfc64cd6ea5cfac01p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_f8541a4b9ef00c8dfc64cd6ea5cfac01p5@PENK
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_af080c5c767a677250e912fdd847c581p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_af080c5c767a677250e912fdd847c581p9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_f320f675b1a1f1c05698b152df2ff611p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_f320f675b1a1f1c05698b152df2ff611p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_b9372f4a3699f542f3dcf41acc9c375bp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_b9372f4a3699f542f3dcf41acc9c375bp@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_b9372f4a3699f542f3dcf41acc9c375bp@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_b9372f4a3699f542f3dcf41acc9c375bp@chr8:57353676..57353688, -
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_11f3d32e3d791c7b93293efb5a10181ep12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_11f3d32e3d791c7b93293efb5a10181ep@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_11f3d32e3d791c7b93293efb5a10181ep4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_11f3d32e3d791c7b93293efb5a10181ep12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_11f3d32e3d791c7b93293efb5a10181ep@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_11f3d32e3d791c7b93293efb5a10181ep4@PLAC1
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_0ed5db72b18b15e9bedecefb4177d121p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_0ed5db72b18b15e9bedecefb4177d121p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_0ed5db72b18b15e9bedecefb4177d121p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_0ed5db72b18b15e9bedecefb4177d121p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_0ed5db72b18b15e9bedecefb4177d121p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_0ed5db72b18b15e9bedecefb4177d121p@chr8:57353982..57353991, -
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_0aa8e0e7b91ea7ff2038d0da37325706p10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_0aa8e0e7b91ea7ff2038d0da37325706p7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_0aa8e0e7b91ea7ff2038d0da37325706p7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_0aa8e0e7b91ea7ff2038d0da37325706p10@ITGA8
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_b44196f77a18b62908f3a6d8cb815f01p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_b44196f77a18b62908f3a6d8cb815f01p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_b44196f77a18b62908f3a6d8cb815f01p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_b44196f77a18b62908f3a6d8cb815f01p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_b44196f77a18b62908f3a6d8cb815f01p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_b44196f77a18b62908f3a6d8cb815f01p@chr17:79071218..79071221, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_9a9cddab09283ea459d4466dbc60a3cfp@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_9a9cddab09283ea459d4466dbc60a3cfp@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_4c127edb343380c384ac44d155571fbdp@chr8:57359975..57359992, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_4c127edb343380c384ac44d155571fbdp18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_4c127edb343380c384ac44d155571fbdp@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_4c127edb343380c384ac44d155571fbdp@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_4c127edb343380c384ac44d155571fbdp18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_4c127edb343380c384ac44d155571fbdp@chr14:89044406..89044416, +
4.2e-29FFCP PHASE1:Hg19::chr10:28033565..28033575,-#_939abc95ab2ec0dfaa1121291d6bd802p@chr10:28033565..28033575, -
4.2e-29FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_939abc95ab2ec0dfaa1121291d6bd802p11@MAB21L2










Property "Property value" (as page type) with input value "UBPROP:0000001 "Roof of the mouth lined with ciliated epithelium.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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