CL:0000807: Difference between revisions

Latest revision as of 16:37, 12 September 2014

Name:	DN3 thymocyte
Namespace:	FANTOM
Definition:	"A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressing the T cell receptor beta-chain in complex with the pre-T cell receptor alpha chain." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms:	"DN3 alpha-beta immature T lymphocyte" EXACT [] "DN3 alpha-beta immature T-cell" EXACT [] "DN3 alpha-beta immature T-lymphocyte" EXACT [] "DN3 cell" EXACT [] "DN3 immature T cell" EXACT [] "double negative 3" EXACT [] "preT.DN3.Th" EXACT [] "TN3 cell" EXACT [] "TN3 thymocyte" EXACT []

Ontology association Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies. link to ontology dataset data

Parents

is_a:	CL:0002489(double negative thymocyte)
develops_from:	CL:0000806(DN2 thymocyte)

Children

develops from:	CL:0000808 (DN4 thymocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Cell ontology.

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000807 (DN3 thymocyte), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
3.29e-195	FFCP PHASE2:Hg19::chr2:162762361..162762364,+	p@chr2:162762361..162762364, +
3.29e-195	FFCP PHASE1:Hg19::chr2:162762361..162762364,+	p@chr2:162762361..162762364, +
1.55e-98	FFCP PHASE2:Hg19::chr15:91989101..91989105,+	p@chr15:91989101..91989105, +
1.55e-98	FFCP PHASE1:Hg19::chr8:50081052..50081075,-	p@chr8:50081052..50081075, -
1.55e-98	FFCP PHASE2:Hg19::chr16:67022522..67022529,+	p12@CES4A
1.55e-98	FFCP PHASE1:Hg19::chr4:2428062..2428080,+	p1@uc003gfa.1
1.55e-98	FFCP PHASE1:Hg19::chr2:146998057..146998070,-	p@chr2:146998057..146998070, -
1.55e-98	FFCP PHASE2:Hg19::chr13:49078833..49078841,-	p@chr13:49078833..49078841, -
1.55e-98	FFCP PHASE1:Hg19::chr4:176123823..176123829,+	p@chr4:176123823..176123829, +
1.55e-98	FFCP PHASE1:Hg19::chr8:114877856..114877881,-	p@chr8:114877856..114877881, -
1.55e-98	FFCP PHASE2:Hg19::chr4:175842511..175842520,-	p@chr4:175842511..175842520, -
1.55e-98	FFCP PHASE2:Hg19::chr3:152204326..152204345,+	p@chr3:152204326..152204345, +
1.55e-98	FFCP PHASE1:Hg19::chr4:134707474..134707504,-	p@chr4:134707474..134707504, -
1.55e-98	FFCP PHASE1:Hg19::chr7:117926347..117926353,-	p@chr7:117926347..117926353, -
1.55e-98	FFCP PHASE1:Hg19::chr1:189141918..189141929,+	p@chr1:189141918..189141929, +
1.55e-98	FFCP PHASE1:Hg19::chr9:72117884..72117889,-	p@chr9:72117884..72117889, -
1.55e-98	FFCP PHASE1:Hg19::chr4:133657589..133657598,-	p@chr4:133657589..133657598, -
1.55e-98	FFCP PHASE2:Hg19::chr4:111448516..111448521,+	p@chr4:111448516..111448521, +
1.55e-98	FFCP PHASE2:Hg19::chr21:47278815..47278834,+	p6@PCBP3
1.55e-98	FFCP PHASE1:Hg19::chr17:14101134..14101143,+	p@chr17:14101134..14101143, +
1.55e-98	FFCP PHASE1:Hg19::chr22:46041912..46041915,+	p@chr22:46041912..46041915, +
1.55e-98	FFCP PHASE2:Hg19::chr6:128263833..128263838,-	p@chr6:128263833..128263838, -
1.55e-98	FFCP PHASE2:Hg19::chr1:189141918..189141929,+	p@chr1:189141918..189141929, +
1.55e-98	FFCP PHASE1:Hg19::chr4:175842511..175842520,-	p@chr4:175842511..175842520, -
1.55e-98	FFCP PHASE1:Hg19::chr3:192598433..192598481,-	p@chr3:192598433..192598481, -
1.55e-98	FFCP PHASE2:Hg19::chr8:67519931..67519935,-	p@chr8:67519931..67519935, -
1.55e-98	FFCP PHASE2:Hg19::chr15:69972162..69972169,+	p@chr15:69972162..69972169, +
1.55e-98	FFCP PHASE1:Hg19::chr21:43982135..43982142,+	p@chr21:43982135..43982142, +
1.55e-98	FFCP PHASE1:Hg19::chr13:24623546..24623587,-	p@chr13:24623546..24623587, -
1.55e-98	FFCP PHASE1:Hg19::chrX:133321044..133321049,+	p@chrX:133321044..133321049, +
1.55e-98	FFCP PHASE2:Hg19::chr4:133657651..133657654,-	p@chr4:133657651..133657654, -
1.55e-98	FFCP PHASE2:Hg19::chr1:237900222..237900230,+	p@chr1:237900222..237900230, +
1.55e-98	FFCP PHASE2:Hg19::chr15:91989133..91989141,+	p@chr15:91989133..91989141, +
1.55e-98	FFCP PHASE1:Hg19::chr21:39490932..39490937,+	p@chr21:39490932..39490937, +
1.55e-98	FFCP PHASE2:Hg19::chr22:46041912..46041915,+	p@chr22:46041912..46041915, +
1.55e-98	FFCP PHASE1:Hg19::chr4:111448516..111448521,+	p@chr4:111448516..111448521, +
1.55e-98	FFCP PHASE2:Hg19::chr10:11846830..11846860,-	p@chr10:11846830..11846860, -
1.55e-98	FFCP PHASE2:Hg19::chr4:105805755..105805761,+	p@chr4:105805755..105805761, +
1.55e-98	FFCP PHASE2:Hg19::chr8:75251775..75251785,+	p@chr8:75251775..75251785, +
1.55e-98	FFCP PHASE2:Hg19::chr4:175842537..175842553,-	p@chr4:175842537..175842553, -
1.55e-98	FFCP PHASE1:Hg19::chr10:11846830..11846860,-	p@chr10:11846830..11846860, -
1.55e-98	FFCP PHASE1:Hg19::chr8:67519931..67519935,-	p@chr8:67519931..67519935, -
1.55e-98	FFCP PHASE1:Hg19::chr4:133657651..133657654,-	p@chr4:133657651..133657654, -
1.55e-98	FFCP PHASE1:Hg19::chr15:91989101..91989105,+	p@chr15:91989101..91989105, +
1.55e-98	FFCP PHASE2:Hg19::chr9:4544914..4544917,-	p@chr9:4544914..4544917, -
1.55e-98	FFCP PHASE1:Hg19::chr3:152204326..152204345,+	p@chr3:152204326..152204345, +
1.55e-98	FFCP PHASE1:Hg19::chr16:67022368..67022374,-	p@chr16:67022368..67022374, -
1.55e-98	FFCP PHASE1:Hg19::chr17:14103251..14103258,+	p@chr17:14103251..14103258, +
1.55e-98	FFCP PHASE1:Hg19::chr4:105805755..105805761,+	p@chr4:105805755..105805761, +
1.55e-98	FFCP PHASE1:Hg19::chr13:49078833..49078841,-	p@chr13:49078833..49078841, -
1.55e-98	FFCP PHASE1:Hg19::chr1:200990231..200990238,-	p@chr1:200990231..200990238, -
1.55e-98	FFCP PHASE1:Hg19::chr8:75251775..75251785,+	p@chr8:75251775..75251785, +
1.55e-98	FFCP PHASE1:Hg19::chr4:175842537..175842553,-	p@chr4:175842537..175842553, -
1.55e-98	FFCP PHASE2:Hg19::chr17:14101134..14101143,+	p@chr17:14101134..14101143, +
1.55e-98	FFCP PHASE2:Hg19::chr15:92006659..92006679,+	p2@uc002bqw.2
1.55e-98	FFCP PHASE1:Hg19::chr9:4544914..4544917,-	p@chr9:4544914..4544917, -
1.55e-98	FFCP PHASE2:Hg19::chr2:162762231..162762234,+	p@chr2:162762231..162762234, +
1.55e-98	FFCP PHASE2:Hg19::chr1:200990231..200990238,-	p@chr1:200990231..200990238, -
1.55e-98	FFCP PHASE2:Hg19::chr7:38287827..38287832,-	p@chr7:38287827..38287832, -
1.55e-98	FFCP PHASE1:Hg19::chr6:128263833..128263838,-	p@chr6:128263833..128263838, -
1.55e-98	FFCP PHASE2:Hg19::chr21:43982135..43982142,+	p@chr21:43982135..43982142, +
1.55e-98	FFCP PHASE1:Hg19::chr15:69972162..69972169,+	p@chr15:69972162..69972169, +
1.55e-98	FFCP PHASE2:Hg19::chr7:19479837..19479844,+	p@chr7:19479837..19479844, +
1.55e-98	FFCP PHASE2:Hg19::chr21:39490932..39490937,+	p@chr21:39490932..39490937, +
1.55e-98	FFCP PHASE2:Hg19::chr4:175858389..175858405,-	p@chr4:175858389..175858405, -
1.55e-98	FFCP PHASE2:Hg19::chr9:87797549..87797564,+	p@chr9:87797549..87797564, +
1.55e-98	FFCP PHASE2:Hg19::chr4:134707420..134707442,-	p@chr4:134707420..134707442, -
1.55e-98	FFCP PHASE2:Hg19::chr9:116857558..116857566,-	p@chr9:116857558..116857566, -
1.55e-98	FFCP PHASE1:Hg19::chr15:91989133..91989141,+	p@chr15:91989133..91989141, +
1.55e-98	FFCP PHASE2:Hg19::chr8:51970952..51970959,+	p@chr8:51970952..51970959, +
1.55e-98	FFCP PHASE1:Hg19::chr2:162762231..162762234,+	p@chr2:162762231..162762234, +
1.55e-98	FFCP PHASE1:Hg19::chr7:38287827..38287832,-	p@chr7:38287827..38287832, -
1.55e-98	FFCP PHASE2:Hg19::chr16:67022368..67022374,-	p@chr16:67022368..67022374, -
1.55e-98	FFCP PHASE1:Hg19::chr7:19479837..19479844,+	p@chr7:19479837..19479844, +
1.55e-98	FFCP PHASE1:Hg19::chr4:175858389..175858405,-	p@chr4:175858389..175858405, -
1.55e-98	FFCP PHASE2:Hg19::chr2:202521027..202521058,-	p@chr2:202521027..202521058, -
1.55e-98	FFCP PHASE2:Hg19::chr17:14103251..14103258,+	p@chr17:14103251..14103258, +
1.55e-98	FFCP PHASE1:Hg19::chr9:87797549..87797564,+	p@chr9:87797549..87797564, +
1.55e-98	FFCP PHASE1:Hg19::chr4:134707420..134707442,-	p@chr4:134707420..134707442, -
1.55e-98	FFCP PHASE2:Hg19::chr14:22962827..22962830,+	p3@uc001weo.2
1.55e-98	FFCP PHASE2:Hg19::chr15:92006720..92006726,+	p1@uc002bqw.2
1.55e-98	FFCP PHASE1:Hg19::chr8:51970952..51970959,+	p@chr8:51970952..51970959, +
1.55e-98	FFCP PHASE1:Hg19::chr9:116857558..116857566,-	p@chr9:116857558..116857566, -
1.55e-98	FFCP PHASE2:Hg19::chr2:146687090..146687095,+	p@chr2:146687090..146687095, +
1.55e-98	FFCP PHASE1:Hg19::chr2:202521027..202521058,-	p@chr2:202521027..202521058, -
1.55e-98	FFCP PHASE2:Hg19::chr8:16739475..16739490,-	p@chr8:16739475..16739490, -
1.55e-98	FFCP PHASE2:Hg19::chr4:134707449..134707458,-	p@chr4:134707449..134707458, -
1.55e-98	FFCP PHASE2:Hg19::chr8:114877856..114877881,-	p@chr8:114877856..114877881, -
1.55e-98	FFCP PHASE1:Hg19::chr15:92006659..92006679,+	p2@uc002bqw.2
1.55e-98	FFCP PHASE2:Hg19::chr4:128884938..128884941,-	p@chr4:128884938..128884941, -
1.55e-98	FFCP PHASE1:Hg19::chr16:67022522..67022529,+	p12@CES4A
1.55e-98	FFCP PHASE1:Hg19::chr2:146687090..146687095,+	p@chr2:146687090..146687095, +
1.55e-98	FFCP PHASE2:Hg19::chr2:141989111..141989114,-	p@chr2:141989111..141989114, -
1.55e-98	FFCP PHASE2:Hg19::chr4:175842470..175842486,-	p@chr4:175842470..175842486, -
1.55e-98	FFCP PHASE1:Hg19::chr8:16739475..16739490,-	p@chr8:16739475..16739490, -
1.55e-98	FFCP PHASE1:Hg19::chr21:47278815..47278834,+	p6@PCBP3
1.55e-98	FFCP PHASE1:Hg19::chr4:134707449..134707458,-	p@chr4:134707449..134707458, -
1.55e-98	FFCP PHASE2:Hg19::chr5:24272119..24272147,-	p@chr5:24272119..24272147, -
1.55e-98	FFCP PHASE2:Hg19::chr4:2428062..2428080,+	p1@uc003gfa.1
1.55e-98	FFCP PHASE2:Hg19::chr3:192598433..192598481,-	p@chr3:192598433..192598481, -

Showing 1 to 100 of 100 entries

@@ Line 1: / Line 1: @@
 {{CL
-|id=CL:0000807
+|alt_id=
-|name=DN3 thymocyte
-|namespace=cell;;efo
-|def="A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressing the T cell receptor beta-chain in complex with the pre-T cell receptor alpha chain." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
-|xref=
-|is_a=CL:0002489
-|synonym="DN3 alpha-beta immature T lymphocyte" EXACT [];;"DN3 alpha-beta immature T-cell" EXACT [];;"DN3 alpha-beta immature T-lymphocyte" EXACT [];;"DN3 cell" EXACT [];;"DN3 immature T cell" EXACT [];;"double negative 3" EXACT [];;"preT.DN3.Th" EXACT [];;"TN3 cell" EXACT [];;"TN3 thymocyte" EXACT []
 |comment=
-|alt_id=
-|disjoint_from=
-|union_of=
 |created_by=
-|obo_creation_date=
+|def="A thymocyte that has the phenotype CD4-negative, CD8-negative, CD44-negative, and CD25-positive and expressing the T cell receptor beta-chain in complex with the pre-T cell receptor alpha chain." [GO_REF:0000031, GOC:add, GOC:tfm, ISBN:0781735149]
-|subset=
 |derives_from=
 |develops_from=CL:0000806
+|disjoint_from=
 |has_quality=
+|id=CL:0000807
+|is_a=CL:0002489
+|is_obsolete=
 |located_in=
+|name=DN3 thymocyte
+|namespace=FANTOM
+|obo_creation_date=
 |part_of=
+|preceded_by=
 |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl.owl;;IAO:0000412 http://purl.obolibrary.org/obo/efo.owl
-|is_obsolete=
+|subset=
-|preceded_by=
+|synonym="DN3 alpha-beta immature T lymphocyte" EXACT [];;"DN3 alpha-beta immature T-cell" EXACT [];;"DN3 alpha-beta immature T-lymphocyte" EXACT [];;"DN3 cell" EXACT [];;"DN3 immature T cell" EXACT [];;"double negative 3" EXACT [];;"preT.DN3.Th" EXACT [];;"TN3 cell" EXACT [];;"TN3 thymocyte" EXACT []
+|union_of=
+|xref=
 }}

Personal tools

CL:0000807: Difference between revisions - resource_browser

Search

Human

Mouse

Rat

Dog

Chicken

Macaque

Cross species

Other

Tools

CL:0000807: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:37, 12 September 2014

Ontology Tree: Loaded from BioPortal

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0