CL:0002250: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=intestinal crypt stem cell | |name=intestinal crypt stem cell | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2010-09-08T09:21:22Z | |obo_creation_date=2010-09-08T09:21:22Z | ||
|part_of=UBERON:0001983 | |part_of=UBERON:0001983 | ||
Latest revision as of 16:41, 12 September 2014
| Name: | intestinal crypt stem cell | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "A cell that is found in a zone occupying the bottom region of the crypt; provide the source of most of the cell types of the intestinal epithelium; proliferate by mitotic division; differentiates into columnar or goblet cells." [GOC:tfm, ISBN:0517223651] | |
| Xrefs: |
| |
| Synonyms: | "stem cell of intestinal crypt of lieberkuhn" EXACT [] | |
| Created by: | tmeehan | |
| Creation date: | 2010-09-08T09:21:22Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000048(multi fate stem cell),CL:0002563(intestinal epithelial cell) |
|---|---|
| part_of: | UBERON:0001983(crypt of Lieberkuhn) |
Children
| derives from: | FF:0000079 (mouse Lgr5-positive intestinal epithelial stem cell sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 12228-129F5 (Lgr5 positive intestinal stem cells, pool1)
- 12229-129F6 (Lgr5 positive intestinal stem cells, pool2)
- 12230-129F7 (Lgr5 positive intestinal stem cells, pool3)
Mouse (Mus musculus)
- 12228-129F5 (Lgr5 positive intestinal stem cells, pool1)
- 12229-129F6 (Lgr5 positive intestinal stem cells, pool2)
- 12230-129F7 (Lgr5 positive intestinal stem cells, pool3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002250 (intestinal crypt stem cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
