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CL:0002518: Difference between revisions

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Line 13: Line 13:
|located_in=
|located_in=
|name=kidney epithelial cell
|name=kidney epithelial cell
|namespace=cell
|namespace=FANTOM
|obo_creation_date=2011-02-08T10:46:34Z
|obo_creation_date=2011-02-08T10:46:34Z
|part_of=UBERON:0002113
|part_of=UBERON:0002113

Latest revision as of 16:43, 12 September 2014

Name:kidney epithelial cell
Namespace:FANTOM
Definition:"An epithelial cell of the kidney." [GOC:tfm, KUPO:SJ]
Xrefs:
links:
KUPO:0001019
Created by:tmeehan
Creation date:2011-02-08T10:46:34Z


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:CL:0000066(epithelial cell),CL:1000497(kidney cell)
part_of:UBERON:0002113(kidney)



Children


is a:CL:0002584 (renal cortical epithelial cell),CL:1000449 (epithelial cell of nephron)
derives from:FF:0000115 (mouse kidney epithelial cell sample),FF:0100383 (renal cell carcinoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002518 (kidney epithelial cell), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data