CL:0002596: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=smooth muscle cell of the carotid artery | |name=smooth muscle cell of the carotid artery | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date=2011-03-06T05:01:56Z | |obo_creation_date=2011-03-06T05:01:56Z | ||
|part_of=UBERON:0005396 | |part_of=UBERON:0005396 | ||
Latest revision as of 16:45, 12 September 2014
| Name: | smooth muscle cell of the carotid artery |
|---|---|
| Namespace: | FANTOM |
| Definition: | "Smooth muscle cell of the carotid artery." [GOC:tfm] |
| Created by: | tmeehan |
| Creation date: | 2011-03-06T05:01:56Z |
Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | CL:0000359(vascular associated smooth muscle cell) |
|---|---|
| part_of: | UBERON:0005396(carotid artery segment) |
Children
| derives from: | FF:0000171 (human smooth muscle cell of the carotid artery sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.
Human (Homo sapiens)
- 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
- 11362-117I3 (Smooth Muscle Cells - Carotid, donor2)
- 11434-118H3 (Smooth Muscle Cells - Carotid, donor3)
Mouse (Mus musculus)
- 11285-116I7 (Smooth Muscle Cells - Carotid, donor1)
- 11362-117I3 (Smooth Muscle Cells - Carotid, donor2)
- 11434-118H3 (Smooth Muscle Cells - Carotid, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002596 (smooth muscle cell of the carotid artery), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
