UBERON:0000047: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0000047 | |||
|is_a=UBERON:0000970 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=simple eye | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=grouping_class;;uberon_slim | ||
| | |synonym= | ||
|union_of= | |||
|xref=TGMA:0000729 | |||
}} | }} | ||
Latest revision as of 17:04, 12 September 2014
| Name: | simple eye | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "An eye with one concave chamber. Note that 'simple' does not imply a reduced level of complexity or acuity." [Wikipedia:Eye#Simple_eyes] | |
| Xrefs: |
| |
| Subset: |
grouping_class uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000970(eye) |
|---|
Children
| is a: | UBERON:0000019 (camera-type eye) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10030-101E3 (retina, adult, pool1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10296-104G8
- 10297-104G9 (eye - muscle superior, donor2)
- 10298-104H1 (eye - muscle lateral, donor2)
- 10299-104H2 (eye - muscle medial, donor2)
... further results Mouse (Mus musculus)
- 10030-101E3 (retina, adult, pool1)
- 10268-104D7 (eye - vitreous humor, donor1)
- 10269-104D8
- 10270-104D9
- 10271-104E1
- 10272-104E2 (eye - muscle inferior rectus, donor1)
- 10296-104G8
- 10297-104G9 (eye - muscle superior, donor2)
- 10298-104H1 (eye - muscle lateral, donor2)
- 10299-104H2 (eye - muscle medial, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000047 (simple eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
