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UBERON:0000019

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Name:camera-type eye
Namespace:FANTOM
Definition:"The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field[GO]. The eye contains the following parts (when they are present in the organism): the eyeball (eye proper), the lacrimal apparatus, the conjuctival, the eyelid // " [GO:0043010, UBERON:cjm]
Xrefs:
links:

AAO:0010340
BTO:0004688
EHDAA2:0000484
EHDAA:936
EMAPA:16198
FMA:54448
MA:0000261
ncithesaurus:Eye
NIF_GrossAnatomy:birnlex_1169
OpenCyc:Mx8Ngx4rwKSh9pwpEbGdrcN5Y29ycB4rvVil5pwpEbGdrcN5Y29ycB4rvViTvpwpEbGdrcN5Y29ycA
SCTID:181143004
TAO:0000107
VHOG:0000275
XAO:0000179

ZFA:0000107
Synonyms: "camera-type eye plus associated structures" RELATED []
"eye" BROAD [FMA:54448]
"orbital part of face" EXACT [FMA:54448]
"orbital region" EXACT [FMA:54448]
"regio orbitalis" EXACT [FMA:54448, FMA:TA]
"vertebrate eye" NARROW []
Comments:AO notes: FMA distinguishes Eye (subdivision of face) which has its parts an Eyeball (organ). MA includes eyelid, conjunctiva and lacrimal apparatus as part of MA:eye - consistent with FMA - so we can infer that MA:eye is more like FMA:eye than FMA:eyeball. For other AOs this distinction is less meaningful - e.g. ZFA has no eyelid; XAO has no eyelid, but it has conjuctiva, which is considered part of the xao:eye. GO considers eyelid development part of eye development. See also notes on optic nerve - XAO, AAO and BTO consider this part of the eye. MA considers the eye muscles part of the eye, whereas FMA has a class 'orbital content' for this
Alt_id: UBERON:FMA_12513-MIAA_0000283-XAO_0000181
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000047(simple eye),UBERON:0004121(ectoderm-derived structure),UBERON:0010314(structure with developmental contribution from neural crest),UBERON:0015212(lateral structure)
develops_from:UBERON:0003072(optic cup)
part_of:UBERON:0004088(ocular region)



Children

derives from:FF:0010054 (human eye - fetal sample)
part of:UBERON:0002203 (vasculature of eye),UBERON:0003269 (skeletal muscle tissue of eye),UBERON:0003314 (eye mesenchyme),UBERON:0004277 (eye muscle),UBERON:0005427 (corneal primordium),UBERON:0005606 (hyaloid cavity),UBERON:0005908 (conjunctival sac),UBERON:0005969 (reticulum trabeculare),UBERON:0006311 (chamber of eyeball),UBERON:0006312 (ocular refractive media),UBERON:0010230 (eyeball of camera-type eye),UBERON:0010409 (eye surface),UBERON:0015808 (eye epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000019 (camera-type eye), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "A cavitated compound organ that transduces light waves into neural signals.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.