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|located_in=
|located_in=
|name=thoracic segment of trunk
|name=thoracic segment of trunk
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 17:10, 12 September 2014

Name:thoracic segment of trunk
Namespace:FANTOM
Definition:"Organismal subdivision of body that lies between the head and the abdomen [Wikipedia]." [Wikipedia:Thorax]
Xrefs:
links:

FMA:259209
MA:0000022

SCTID:302551006
Synonyms: "thorax" RELATED [MA:0000022]
"upper body" RELATED []
Comments:Usage notes: note that we use the slightly verbose term 'thoracic segment of trunk' to avoid confusuon with insect thorax. todo - taxonomic constraints. Also, in FMA 'thorax' is a synonym for chest
Alt_id: UBERON:FBbt_00000015-FMA_9576-MA_0000022-MIAA_0000295
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0009569(subdivision of trunk),UBERON:0011676(subdivision of organism along main body axis)



Children

part of:UBERON:0001103 (diaphragm),UBERON:0001443 (chest),UBERON:0001515 (thoracic aorta),UBERON:0001533 (subclavian artery),UBERON:0002224 (thoracic cavity),UBERON:0003830 (thoracic segment muscle),UBERON:0003834 (thoracic segment blood vessel),UBERON:0005178 (thoracic cavity element),UBERON:0005181 (thoracic segment organ)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000915 (thoracic segment of trunk), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data