UBERON:0001558: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_45662-MA_0000435 | ||
|comment=This class was created automatically from a combination of ontologies | |comment=This class was created automatically from a combination of ontologies | ||
|created_by= | |created_by= | ||
| | |def="Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung.[FMA]" [FMA:FMA, Wikipedia:Lower_respiratory_tract] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0001558 | |||
|is_a=UBERON:0000072 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=lower respiratory tract | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |preceded_by= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |||
|subset=uberon_slim | |||
|synonym= | |||
|union_of= | |||
|xref=EHDAA2:0001036;;EMAPA:16738;;FMA:45662;;http://upload.wikimedia.org/wikipedia/commons/9/9f/Illu_conducting_passages.svg;;http://upload.wikimedia.org/wikipedia/commons/thumb/c/c3/Illu_conducting_passages.jpg/200px-Illu_conducting_passages.jpg;;MA:0000435;;OpenCyc:Mx4rQRqjUgAKEdyHxgDggVfs8g;;SCTID:281488008;;VHOG:0000382 | |||
}} | }} | ||
Latest revision as of 17:19, 12 September 2014
| Name: | lower respiratory tract | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Subdivision of respiratory system which consists of the tracheobronchial tree, right lung and left lung.[FMA]" [FMA:FMA, Wikipedia:Lower_respiratory_tract] | ||
| Xrefs: |
| ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FMA_45662-MA_0000435 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000072(segment of respiratory tract) |
|---|
Children
| part of: | UBERON:0000170 (pair of lungs),CL:0002632 (epithelial cell of lower respiratory tract),UBERON:0004815 (lower respiratory tract epithelium),UBERON:0007196 (tracheobronchial tree) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10099-102C9
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
... further results Mouse (Mus musculus)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10099-102C9
- 10708-109H6 (alveolar cell carcinoma cell line:SW 1573)
- 10709-109H7 (bronchioalveolar carcinoma cell line:NCI-H358)
- 10715-109I4 (bronchioalveolar carcinoma cell line:NCI-H650)
- 11292-117A5 (Tracheal Epithelial Cells, donor1)
- 11369-118A1 (Tracheal Epithelial Cells, donor2)
- 11441-118I1 (Tracheal Epithelial Cells, donor3)
- 11453-119A4 (Bronchial Epithelial Cell, donor4)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001558 (lower respiratory tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:164389604..164389615,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr2:164389604..164389615, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147338308..147338339,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr6:147338308..147338339, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:110941246..110941254,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr9:110941246..110941254, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:115644652..115644657,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr13:115644652..115644657, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88696144..88696152,+#_6e86b3582c80cc3e065071abc12a24f9 | p3@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr15:101258041..101258052,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr15:101258041..101258052, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:91199084..91199088,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr5:91199084..91199088, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:4165247..4165267,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr11:4165247..4165267, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr3:89487103..89487111,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr3:89487103..89487111, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:91198876..91198885,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr5:91198876..91198885, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:110941233..110941240,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr9:110941233..110941240, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:86461733..86461747,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr11:86461733..86461747, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:135420996..135421000,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr5:135420996..135421000, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:60538178..60538182,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr2:60538178..60538182, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr2:164393992..164394012,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr2:164393992..164394012, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:151954385..151954387,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr1:151954385..151954387, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:72401408..72401416,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr13:72401408..72401416, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88696177..88696184,+#_6e86b3582c80cc3e065071abc12a24f9 | p2@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:4165247..4165267,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr11:4165247..4165267, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:135422125..135422141,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr5:135422125..135422141, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:100006864..100006873,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr11:100006864..100006873, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147205603..147205610,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr6:147205603..147205610, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:115644652..115644657,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr13:115644652..115644657, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr17:25885558..25885567,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr17:25885558..25885567, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:86461733..86461747,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr11:86461733..86461747, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:91199084..91199088,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr5:91199084..91199088, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr9:110941246..110941254,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr9:110941246..110941254, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:108303887..108303893,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr1:108303887..108303893, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:88563185..88563192,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr4:88563185..88563192, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:115722413..115722430,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr13:115722413..115722430, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147205677..147205683,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr6:147205677..147205683, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:135422125..135422141,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr5:135422125..135422141, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr13:72401408..72401416,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr13:72401408..72401416, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:164389604..164389615,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr2:164389604..164389615, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88696144..88696152,+#_6e86b3582c80cc3e065071abc12a24f9 | p3@Gm12603 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr1:151954385..151954387,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr1:151954385..151954387, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:100006864..100006873,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr11:100006864..100006873, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr1:108303887..108303893,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr1:108303887..108303893, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:96608719..96608730,-#_6e86b3582c80cc3e065071abc12a24f9 | p1@ENSMUST00000170876, p1@uc011ydj.1 |
| 1.58e-86 | FFCP PHASE1:Mm9::chr5:135420996..135421000,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr5:135420996..135421000, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr15:101258041..101258052,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr15:101258041..101258052, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr12:17549752..17549763,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr12:17549752..17549763, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147205603..147205610,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr6:147205603..147205610, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:60538178..60538182,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr2:60538178..60538182, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr17:25885558..25885567,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr17:25885558..25885567, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:32641594..32641601,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr16:32641594..32641601, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr13:115722413..115722430,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr13:115722413..115722430, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr2:164393992..164394012,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr2:164393992..164394012, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:32641594..32641601,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr16:32641594..32641601, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr9:110941233..110941240,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr9:110941233..110941240, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88696177..88696184,+#_6e86b3582c80cc3e065071abc12a24f9 | p2@Gm12603 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr6:147338308..147338339,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr6:147338308..147338339, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:96608719..96608730,-#_6e86b3582c80cc3e065071abc12a24f9 | p1@ENSMUST00000170876, p1@uc011ydj.1 |
| 1.58e-86 | FFCP PHASE2:Mm9::chr12:17549752..17549763,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr12:17549752..17549763, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr5:91198876..91198885,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr5:91198876..91198885, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr3:89487103..89487111,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr3:89487103..89487111, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr6:147205677..147205683,+#_6e86b3582c80cc3e065071abc12a24f9 | p@chr6:147205677..147205683, + |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:88563185..88563192,-#_6e86b3582c80cc3e065071abc12a24f9 | p@chr4:88563185..88563192, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:4164303..4164316,+#_d9f172989452624b429aa083732be3d0 | p@chr11:4164303..4164316, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:34905716..34905718,+#_d9f172989452624b429aa083732be3d0 | p@chr14:34905716..34905718, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:100002128..100002131,+#_d9f172989452624b429aa083732be3d0 | p@chr11:100002128..100002131, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr2:144564146..144564166,+#_d9f172989452624b429aa083732be3d0 | p3@Dtd1 |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:90392458..90392472,+#_d9f172989452624b429aa083732be3d0 | p@chr3:90392458..90392472, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr2:144564146..144564166,+#_d9f172989452624b429aa083732be3d0 | p3@Dtd1 |
| 1.33e-65 | FFCP PHASE2:Mm9::chr6:147212620..147212625,+#_d9f172989452624b429aa083732be3d0 | p@chr6:147212620..147212625, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:90392458..90392472,+#_d9f172989452624b429aa083732be3d0 | p@chr3:90392458..90392472, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr19:47939269..47939279,-#_d9f172989452624b429aa083732be3d0 | p@chr19:47939269..47939279, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr6:147212620..147212625,+#_d9f172989452624b429aa083732be3d0 | p@chr6:147212620..147212625, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:121437538..121437546,+#_d9f172989452624b429aa083732be3d0 | p@chr3:121437538..121437546, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:121437538..121437546,+#_d9f172989452624b429aa083732be3d0 | p@chr3:121437538..121437546, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr19:47932377..47932386,-#_d9f172989452624b429aa083732be3d0 | p@chr19:47932377..47932386, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr14:31386795..31386797,-#_d9f172989452624b429aa083732be3d0 | p@chr14:31386795..31386797, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chrX:20383628..20383635,+#_d9f172989452624b429aa083732be3d0 | p@chrX:20383628..20383635, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr19:47932377..47932386,-#_d9f172989452624b429aa083732be3d0 | p@chr19:47932377..47932386, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:100002128..100002131,+#_d9f172989452624b429aa083732be3d0 | p@chr11:100002128..100002131, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:29642912..29642916,-#_d9f172989452624b429aa083732be3d0 | p@chr11:29642912..29642916, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:29642912..29642916,-#_d9f172989452624b429aa083732be3d0 | p@chr11:29642912..29642916, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:31386795..31386797,-#_d9f172989452624b429aa083732be3d0 | p@chr14:31386795..31386797, - |
| 1.33e-65 | FFCP PHASE1:Mm9::chr3:121437587..121437593,+#_d9f172989452624b429aa083732be3d0 | p@chr3:121437587..121437593, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr19:47939269..47939279,-#_d9f172989452624b429aa083732be3d0 | p@chr19:47939269..47939279, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr3:121437587..121437593,+#_d9f172989452624b429aa083732be3d0 | p@chr3:121437587..121437593, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr14:34905716..34905718,+#_d9f172989452624b429aa083732be3d0 | p@chr14:34905716..34905718, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:4164303..4164316,+#_d9f172989452624b429aa083732be3d0 | p@chr11:4164303..4164316, + |
| 1.33e-65 | FFCP PHASE2:Mm9::chrX:20383628..20383635,+#_d9f172989452624b429aa083732be3d0 | p@chrX:20383628..20383635, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr15:38385124..38385138,+#_ec733646a385f3c54af91dded59d1b00 | p@chr15:38385124..38385138, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr19:47928736..47928764,+#_ec733646a385f3c54af91dded59d1b00 | p@chr19:47928736..47928764, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr1:90456476..90456498,+#_ec733646a385f3c54af91dded59d1b00 | p@chr1:90456476..90456498, + |
| 6.04e-65 | FFCP PHASE1:Mm9::chr17:25888467..25888513,-#_ec733646a385f3c54af91dded59d1b00 | p@chr17:25888467..25888513, - |
| 6.04e-65 | FFCP PHASE1:Mm9::chr1:90456476..90456498,+#_ec733646a385f3c54af91dded59d1b00 | p@chr1:90456476..90456498, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr15:38385124..38385138,+#_ec733646a385f3c54af91dded59d1b00 | p@chr15:38385124..38385138, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr19:47928736..47928764,+#_ec733646a385f3c54af91dded59d1b00 | p@chr19:47928736..47928764, + |
| 6.04e-65 | FFCP PHASE2:Mm9::chr17:25888467..25888513,-#_ec733646a385f3c54af91dded59d1b00 | p@chr17:25888467..25888513, - |
| 4.9e-53 | FFCP PHASE1:Mm9::chrX:163645025..163645028,+#_d3bcdfc3674312a3fcfa3374183fc9b4 | p@chrX:163645025..163645028, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr11:96608968..96608974,-#_d3bcdfc3674312a3fcfa3374183fc9b4 | p2@ENSMUST00000166907 |
| 4.9e-53 | FFCP PHASE1:Mm9::chr6:147212455..147212462,-#_d3bcdfc3674312a3fcfa3374183fc9b4 | p6@Pthlh |
| 4.9e-53 | FFCP PHASE1:Mm9::chr5:103804464..103804467,+#_d3bcdfc3674312a3fcfa3374183fc9b4 | p@chr5:103804464..103804467, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr5:92644371..92644380,-#_d3bcdfc3674312a3fcfa3374183fc9b4 | p1@U90926 |
| 4.9e-53 | FFCP PHASE1:Mm9::chr1:152012112..152012121,-#_d3bcdfc3674312a3fcfa3374183fc9b4 | p6@ENSMUST00000163840 |
| 4.9e-53 | FFCP PHASE2:Mm9::chr12:8799233..8799252,+#_d3bcdfc3674312a3fcfa3374183fc9b4 | p@chr12:8799233..8799252, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr17:71105425..71105430,+#_d3bcdfc3674312a3fcfa3374183fc9b4 | p@chr17:71105425..71105430, + |
