UBERON:0001758: Difference between revisions
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|located_in= | |located_in= | ||
|name=periodontium | |name=periodontium | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0003672 | |part_of=UBERON:0003672 | ||
Latest revision as of 17:20, 12 September 2014
| Name: | periodontium | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "The tissues that invest or help to invest and support the teeth, including the periodontal ligament, gingivae, cementum, and alveolar and supporting bone[BTO]." [BTO:0001021, Wikipedia:Periodontium] | ||
| Xrefs: |
| ||
| Synonyms: |
"paradentium" RELATED [MESH:A.14.254.646] "periodontal ligament" RELATED INCONSISTENT [FMA:56665] "periodontal membrane" RELATED [MA:0002467] "tooth supporting structure" RELATED [MESH:A.14.254.646] | ||
| Comments: | note FMA treats periodontium and periodontal ligament as the same | ||
| Alt_id: | UBERON:FMA_56665-MA_0002467 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue) |
|---|---|
| part_of: | UBERON:0003672(dentition) |
Children
| part of: | CL:0002556 (fibroblast of periodontium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
- 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
- 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
- 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
- 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
- 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001758 (periodontium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 7.06e-63 | FFCP PHASE1:Hg19::chr1:75598362..75598407,-#_19c8670d68dde466e135758d5df20e7a | p1@ENST00000427892, p1@uc001dgp.1 |
| 7.06e-63 | FFCP PHASE2:Hg19::chr1:75598362..75598407,-#_19c8670d68dde466e135758d5df20e7a | p1@ENST00000427892, p1@uc001dgp.1 |
| 1.23e-62 | FFCP PHASE2:Hg19::chr1:75599683..75599699,-#_a6fe15afb18b9ba4988c32de6f3d268d | p@chr1:75599683..75599699, - |
| 1.23e-62 | FFCP PHASE1:Hg19::chr1:75599683..75599699,-#_a6fe15afb18b9ba4988c32de6f3d268d | p@chr1:75599683..75599699, - |
| 2.45e-58 | FFCP PHASE1:Hg19::chr6:707779..707821,+#_4ccc82409135baca1cf00e06ceb1a32c | p@chr6:707779..707821, + |
| 2.45e-58 | FFCP PHASE2:Hg19::chr6:707779..707821,+#_4ccc82409135baca1cf00e06ceb1a32c | p@chr6:707779..707821, + |
| 4.63e-53 | FFCP PHASE1:Hg19::chr1:75599672..75599682,-#_2545d83fe9d8060ae2f78feca69a5b01 | p@chr1:75599672..75599682, - |
| 4.63e-53 | FFCP PHASE2:Hg19::chr1:75599672..75599682,-#_2545d83fe9d8060ae2f78feca69a5b01 | p@chr1:75599672..75599682, - |
| 9.31e-47 | FFCP PHASE1:Hg19::chr1:75600067..75600094,+#_2fc01b4fe5fa7634c9d426b74cc7fc43 | p2@LHX8 |
| 9.31e-47 | FFCP PHASE2:Hg19::chr1:75600067..75600094,+#_2fc01b4fe5fa7634c9d426b74cc7fc43 | p2@LHX8 |
| 4.34e-43 | FFCP PHASE1:Hg19::chr1:75602043..75602093,+#_379e0d2d4c198fdebc462c11570c09c4 | p1@LHX8 |
| 4.34e-43 | FFCP PHASE2:Hg19::chr1:75602043..75602093,+#_379e0d2d4c198fdebc462c11570c09c4 | p1@LHX8 |
| 1.34e-37 | FFCP PHASE1:Hg19::chr6:129908113..129908144,-#_7fb499d54af7a0f555c92a3a3be6cc65 | p@chr6:129908113..129908144, - |
| 1.34e-37 | FFCP PHASE2:Hg19::chr6:129908113..129908144,-#_7fb499d54af7a0f555c92a3a3be6cc65 | p@chr6:129908113..129908144, - |
| 5.69e-35 | FFCP PHASE1:Hg19::chr2:172953513..172953549,-#_49643a93e1c8481891d6aa53155a9a12 | p@chr2:172953513..172953549, - |
| 5.69e-35 | FFCP PHASE2:Hg19::chr2:172953513..172953549,-#_49643a93e1c8481891d6aa53155a9a12 | p@chr2:172953513..172953549, - |
| 1.19e-32 | FFCP PHASE1:Hg19::chr6:1389871..1389876,+#_d6ef6faef80827b15c3de0493bcefdc2 | p4@FOXF2 |
| 1.19e-32 | FFCP PHASE2:Hg19::chr6:1389871..1389876,+#_d6ef6faef80827b15c3de0493bcefdc2 | p4@FOXF2 |
| 2.68e-31 | FFCP PHASE2:Hg19::chr18:34273182..34273194,+#_80caf3ab903823203055f7aec1da18d5 | p6@FHOD3 |
| 2.68e-31 | FFCP PHASE1:Hg19::chr18:34273182..34273194,+#_80caf3ab903823203055f7aec1da18d5 | p6@FHOD3 |
| 2.78e-30 | FFCP PHASE1:Hg19::chr4:152086796..152086808,-#_0c23777be41d4e5e8e64b9164b36af06 | p18@SH3D19 |
| 2.78e-30 | FFCP PHASE2:Hg19::chr4:152086796..152086808,-#_0c23777be41d4e5e8e64b9164b36af06 | p18@SH3D19 |
| 7.33e-29 | FFCP PHASE1:Hg19::chr6:1389613..1389637,-#_2b5414c617419e14060ed3b4de6883b5 | p@chr6:1389613..1389637, - |
| 7.33e-29 | FFCP PHASE2:Hg19::chr6:1389613..1389637,-#_2b5414c617419e14060ed3b4de6883b5 | p@chr6:1389613..1389637, - |
| 2.08e-27 | FFCP PHASE1:Hg19::chr12:115777087..115777091,+#_28b84382fdbf1e61382a853e5ced297a | p@chr12:115777087..115777091, + |
| 2.08e-27 | FFCP PHASE2:Hg19::chr12:115777087..115777091,+#_28b84382fdbf1e61382a853e5ced297a | p@chr12:115777087..115777091, + |
| 2.21e-25 | FFCP PHASE2:Hg19::chr11:7987028..7987043,-#_4dba9097502e6ad6e8a74f112c15a974 | p2@NLRP10 |
| 2.21e-25 | FFCP PHASE1:Hg19::chr11:7987028..7987043,-#_4dba9097502e6ad6e8a74f112c15a974 | p2@NLRP10 |
| 4.34e-23 | FFCP PHASE2:Hg19::chr1:75600979..75601005,+#_4e6b95766999864e5db9dfb9018bdb36 | p@chr1:75600979..75601005, + |
| 4.34e-23 | FFCP PHASE1:Hg19::chr1:75600979..75601005,+#_4e6b95766999864e5db9dfb9018bdb36 | p@chr1:75600979..75601005, + |
| 3.51e-22 | FFCP PHASE1:Hg19::chr18:65337698..65337712,+#_766a371db65db97bf25981adb699289a | p@chr18:65337698..65337712, + |
| 3.51e-22 | FFCP PHASE2:Hg19::chr18:65337698..65337712,+#_766a371db65db97bf25981adb699289a | p@chr18:65337698..65337712, + |
| 6.23e-22 | FFCP PHASE2:Hg19::chr1:31882992..31883005,+#_3e617948c6149036d7afafd342137c2b | p14@SERINC2 |
| 6.23e-22 | FFCP PHASE1:Hg19::chr1:31882992..31883005,+#_3e617948c6149036d7afafd342137c2b | p14@SERINC2 |
| 4.63e-21 | FFCP PHASE1:Hg19::chr9:96717678..96717689,-#_461373c1917def380539eb8e0f264aa7 | p2@BARX1 |
| 4.63e-21 | FFCP PHASE2:Hg19::chr9:96717678..96717689,-#_461373c1917def380539eb8e0f264aa7 | p2@BARX1 |
| 5.39e-21 | FFCP PHASE1:Hg19::chr10:28034772..28034783,-#_2b24f87f068816f7cfb9e8674eeb74ee | p4@MKX |
| 5.39e-21 | FFCP PHASE2:Hg19::chr10:28034772..28034783,-#_2b24f87f068816f7cfb9e8674eeb74ee | p4@MKX |
| 4.99e-20 | FFCP PHASE1:Hg19::chr14:37126765..37126799,+#_e205b0daef08902e8ff3c6ee268a4e92 | p2@PAX9 |
| 4.99e-20 | FFCP PHASE2:Hg19::chr14:37126765..37126799,+#_e205b0daef08902e8ff3c6ee268a4e92 | p2@PAX9 |
| 5.89e-20 | FFCP PHASE2:Hg19::chr1:75602768..75602785,+#_977750e6db63f72ac7d0864cc6761d7e | p@chr1:75602768..75602785, + |
| 5.89e-20 | FFCP PHASE1:Hg19::chr1:75602768..75602785,+#_977750e6db63f72ac7d0864cc6761d7e | p@chr1:75602768..75602785, + |
| 6.5e-20 | FFCP PHASE1:Hg19::chr6:148761434..148761452,+#_aa6e6b0261f3c7eb4090a274614dc9fd | p11@SASH1 |
| 6.5e-20 | FFCP PHASE2:Hg19::chr6:148761434..148761452,+#_aa6e6b0261f3c7eb4090a274614dc9fd | p11@SASH1 |
| 3.13e-18 | FFCP PHASE1:Hg19::chr8:57354324..57354335,-#_a9cc7109c07806d421dc8b51f08a6d17 | p@chr8:57354324..57354335, - |
| 3.13e-18 | FFCP PHASE2:Hg19::chr8:57354324..57354335,-#_a9cc7109c07806d421dc8b51f08a6d17 | p@chr8:57354324..57354335, - |
| 3.96e-18 | FFCP PHASE1:Hg19::chr1:83982415..83982420,+#_7291bc68ad1f2ec232438a6b90252b76 | p@chr1:83982415..83982420, + |
| 3.96e-18 | FFCP PHASE2:Hg19::chr1:83982415..83982420,+#_7291bc68ad1f2ec232438a6b90252b76 | p@chr1:83982415..83982420, + |
| 4.73e-18 | FFCP PHASE1:Hg19::chr10:24738381..24738397,+#_5168fd95183bfac8315e8a7b812c475f | p17@KIAA1217 |
| 4.73e-18 | FFCP PHASE2:Hg19::chr10:24738381..24738397,+#_5168fd95183bfac8315e8a7b812c475f | p17@KIAA1217 |
| 6.46e-18 | FFCP PHASE2:Hg19::chr4:108204864..108204887,-#_12ce675e5fb17533affedbb29f1acd46 | p3@DKK2 |
| 6.46e-18 | FFCP PHASE1:Hg19::chr4:108204864..108204887,-#_12ce675e5fb17533affedbb29f1acd46 | p3@DKK2 |
| 9.07e-18 | FFCP PHASE2:Hg19::chr1:75602749..75602758,+#_0db8c72681a480e9f90258de78a001df | p@chr1:75602749..75602758, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr4:14094655..14094663,+#_0db8c72681a480e9f90258de78a001df | p@chr4:14094655..14094663, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr1:75602005..75602017,+#_0db8c72681a480e9f90258de78a001df | p@chr1:75602005..75602017, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr4:14094655..14094663,+#_0db8c72681a480e9f90258de78a001df | p@chr4:14094655..14094663, + |
| 9.07e-18 | FFCP PHASE2:Hg19::chr1:75602005..75602017,+#_0db8c72681a480e9f90258de78a001df | p@chr1:75602005..75602017, + |
| 9.07e-18 | FFCP PHASE1:Hg19::chr1:75602749..75602758,+#_0db8c72681a480e9f90258de78a001df | p@chr1:75602749..75602758, + |
| 9.28e-18 | FFCP PHASE1:Hg19::chr6:116479897..116479942,-#_dd18ac16e05c5ee3a96e5e33296523a8 | p2@COL10A1 |
| 9.28e-18 | FFCP PHASE2:Hg19::chr6:116479897..116479942,-#_dd18ac16e05c5ee3a96e5e33296523a8 | p2@COL10A1 |
| 1.22e-17 | FFCP PHASE1:Hg19::chr10:15761954..15761965,-#_185801a1f5011fbc24d5b7da86cb4927 | p7@ITGA8 |
| 1.22e-17 | FFCP PHASE2:Hg19::chr10:15761954..15761965,-#_185801a1f5011fbc24d5b7da86cb4927 | p7@ITGA8 |
| 1.85e-17 | FFCP PHASE1:Hg19::chr1:241577071..241577081,+#_530abf622f593964ef070205470dfab7 | p@chr1:241577071..241577081, + |
| 1.85e-17 | FFCP PHASE2:Hg19::chr1:241577071..241577081,+#_530abf622f593964ef070205470dfab7 | p@chr1:241577071..241577081, + |
| 3.81e-17 | FFCP PHASE1:Hg19::chr6:1389647..1389668,-#_573cd7f324f9b583432ed2e2e4245672 | p@chr6:1389647..1389668, - |
| 3.81e-17 | FFCP PHASE2:Hg19::chr6:1389647..1389668,-#_573cd7f324f9b583432ed2e2e4245672 | p@chr6:1389647..1389668, - |
| 4.15e-17 | FFCP PHASE2:Hg19::chr1:68257383..68257394,-#_52d6aa2f0658c60b7c2c842958665f6b | p@chr1:68257383..68257394, - |
| 4.15e-17 | FFCP PHASE1:Hg19::chr1:68257383..68257394,-#_52d6aa2f0658c60b7c2c842958665f6b | p@chr1:68257383..68257394, - |
| 6.03e-17 | FFCP PHASE1:Hg19::chr6:148761457..148761478,+#_6f725de4e60ed802bf070ca4fd0de318 | p8@SASH1 |
| 6.03e-17 | FFCP PHASE2:Hg19::chr6:148761457..148761478,+#_6f725de4e60ed802bf070ca4fd0de318 | p8@SASH1 |
| 2.11e-16 | FFCP PHASE1:Hg19::chr4:47857451..47857469,-#_3312e6cfccd86e03aac041158c6531d8 | p@chr4:47857451..47857469, - |
| 2.11e-16 | FFCP PHASE2:Hg19::chr4:47857451..47857469,-#_3312e6cfccd86e03aac041158c6531d8 | p@chr4:47857451..47857469, - |
| 2.59e-16 | FFCP PHASE1:Hg19::chr15:33406335..33406350,-#_bb8738ac6dfc320131ae1149d4b28e3b | p@chr15:33406335..33406350, - |
| 2.59e-16 | FFCP PHASE2:Hg19::chr15:33406335..33406350,-#_bb8738ac6dfc320131ae1149d4b28e3b | p@chr15:33406335..33406350, - |
| 3.17e-16 | FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_299809e2dba403a1d55f27dcaedfdb89 | p1@ENST00000555639 |
| 3.17e-16 | FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_299809e2dba403a1d55f27dcaedfdb89 | p1@ENST00000555639 |
| 4.64e-16 | FFCP PHASE1:Hg19::chr18:34273196..34273214,+#_75f6336a96b46cd26640f4158094bfdb | p2@FHOD3 |
| 4.64e-16 | FFCP PHASE2:Hg19::chr18:34273196..34273214,+#_75f6336a96b46cd26640f4158094bfdb | p2@FHOD3 |
| 7.23e-16 | FFCP PHASE1:Hg19::chr3:37204870..37204881,-#_fa6212d2d2afb85828d7ac852909f6ad | p@chr3:37204870..37204881, - |
| 7.23e-16 | FFCP PHASE2:Hg19::chr3:37204870..37204881,-#_fa6212d2d2afb85828d7ac852909f6ad | p@chr3:37204870..37204881, - |
| 1.02e-15 | FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_e029331023a882eeda8f903bd53cf99d | p1@ENST00000449986 |
| 1.02e-15 | FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_e029331023a882eeda8f903bd53cf99d | p1@ENST00000449986 |
| 1.12e-15 | FFCP PHASE1:Hg19::chr4:152090554..152090566,+#_3889b98fd0800a10fd217a59856e6f4e | p@chr4:152090554..152090566, + |
| 1.12e-15 | FFCP PHASE2:Hg19::chr4:152090554..152090566,+#_3889b98fd0800a10fd217a59856e6f4e | p@chr4:152090554..152090566, + |
| 1.13e-15 | FFCP PHASE1:Hg19::chr8:57354211..57354220,+#_4393fe8f83aeb347309481bd6e5831b6 | p@chr8:57354211..57354220, + |
| 1.13e-15 | FFCP PHASE2:Hg19::chr18:59685444..59685459,-#_4393fe8f83aeb347309481bd6e5831b6 | p@chr18:59685444..59685459, - |
| 1.13e-15 | FFCP PHASE2:Hg19::chr8:57354211..57354220,+#_4393fe8f83aeb347309481bd6e5831b6 | p@chr8:57354211..57354220, + |
| 1.13e-15 | FFCP PHASE1:Hg19::chr18:59685444..59685459,-#_4393fe8f83aeb347309481bd6e5831b6 | p@chr18:59685444..59685459, - |
| 1.31e-15 | FFCP PHASE2:Hg19::chr1:75600318..75600329,+#_fe82443a209b961a56426b4862485939 | p4@LHX8 |
| 1.31e-15 | FFCP PHASE1:Hg19::chr4:13890014..13890023,+#_fe82443a209b961a56426b4862485939 | p@chr4:13890014..13890023, + |
| 1.31e-15 | FFCP PHASE2:Hg19::chr4:13890014..13890023,+#_fe82443a209b961a56426b4862485939 | p@chr4:13890014..13890023, + |
| 1.31e-15 | FFCP PHASE1:Hg19::chr1:75600318..75600329,+#_fe82443a209b961a56426b4862485939 | p4@LHX8 |
| 2.33e-15 | FFCP PHASE2:Hg19::chr10:28033614..28033628,-#_b4880690db1604ab36c0453f7666a734 | p@chr10:28033614..28033628, - |
| 2.33e-15 | FFCP PHASE1:Hg19::chr10:28033614..28033628,-#_b4880690db1604ab36c0453f7666a734 | p@chr10:28033614..28033628, - |
| 4.6e-15 | FFCP PHASE1:Hg19::chr8:57354251..57354262,-#_0653b56faca2fafdf3fab7dcc951906f | p@chr8:57354251..57354262, - |
| 4.6e-15 | FFCP PHASE2:Hg19::chr8:57354251..57354262,-#_0653b56faca2fafdf3fab7dcc951906f | p@chr8:57354251..57354262, - |
| 5.3e-15 | FFCP PHASE2:Hg19::chr7:134005080..134005095,-#_5db111254dacf1dd580cbbed411cd570 | p@chr7:134005080..134005095, - |
| 5.3e-15 | FFCP PHASE1:Hg19::chr7:134005080..134005095,-#_5db111254dacf1dd580cbbed411cd570 | p@chr7:134005080..134005095, - |
| 5.54e-15 | FFCP PHASE1:Hg19::chr17:78808278..78808309,-#_3d7952b4333758c80a8be6b8d2b0b5ad | p@chr17:78808278..78808309, - |
| 5.54e-15 | FFCP PHASE2:Hg19::chr17:78808278..78808309,-#_3d7952b4333758c80a8be6b8d2b0b5ad | p@chr17:78808278..78808309, - |
