UBERON:0002372: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:FMA_9609-MA_0000143 | ||
|comment=Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat. | |comment=Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat. | ||
|created_by= | |created_by= | ||
| | |def="Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002372 | |||
|is_a=UBERON:0001962 ;;UBERON:0004119 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=tonsil | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001735 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=uberon_slim | ||
| | |synonym="Mandel" RELATED [BTO:0001387] | ||
|union_of= | |||
|xref=BTO:0001387;;EFO:0001401;;EV:0100052;;FMA:9609;;GAID:341;;MA:0000143;;MESH:A.03.867.603.925;;ncithesaurus:Tonsil;;ncithesaurus:Tonsilar_Tissue;;ncithesaurus:Tonsillar_Lymphoid_Tissue;;OpenCyc:Mx4rvVivrZwpEbGdrcN5Y29ycA;;VHOG:0001139 | |||
}} | }} | ||
Latest revision as of 17:30, 12 September 2014
| Name: | tonsil | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Portion of lymphoid tissue on either side of the throat." [Wikipedia:Tonsil] | ||
| Xrefs: |
| ||
| Synonyms: | "Mandel" RELATED [BTO:0001387] | ||
| Comments: | Most commonly, the term "tonsils" refers to the palatine tonsils that can be seen in the back of the throat. | ||
| Alt_id: | UBERON:FMA_9609-MA_0000143 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001962(gut-associated lymphoid tissue),UBERON:0004119(endoderm-derived structure) |
|---|---|
| part_of: | UBERON:0001735(tonsillar ring) |
Children
| derives from: | FF:0010047 (human tonsil - adult sample) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10047-101G2 (tonsil, adult, pool1)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002372 (tonsil), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.42e-195 | FFCP PHASE1:Hg19::chr14:107049312..107049315,-#_b6e6553187b335dbd3f83f2c275fc4eb | p2@IGHV3-53 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr2:89459813..89459818,-#_b6e6553187b335dbd3f83f2c275fc4eb | p1@IGKV6-21 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr20:21684387..21684390,-#_b6e6553187b335dbd3f83f2c275fc4eb | p2@ENST00000424377 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr16:12337006..12337010,+#_b6e6553187b335dbd3f83f2c275fc4eb | p@chr16:12337006..12337010, + |
| 5.42e-195 | FFCP PHASE1:Hg19::chr19:5850872..5850893,-#_b6e6553187b335dbd3f83f2c275fc4eb | p@chr19:5850872..5850893, - |
| 5.42e-195 | FFCP PHASE1:Hg19::chr12:53200416..53200421,+#_b6e6553187b335dbd3f83f2c275fc4eb | p7@CU692075 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr20:21684387..21684390,-#_b6e6553187b335dbd3f83f2c275fc4eb | p2@ENST00000424377 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr16:12334592..12334599,+#_b6e6553187b335dbd3f83f2c275fc4eb | p@chr16:12334592..12334599, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr2:89459813..89459818,-#_b6e6553187b335dbd3f83f2c275fc4eb | p1@IGKV6-21 |
| 5.42e-195 | FFCP PHASE2:Hg19::chr19:5850872..5850893,-#_b6e6553187b335dbd3f83f2c275fc4eb | p@chr19:5850872..5850893, - |
| 5.42e-195 | FFCP PHASE2:Hg19::chr14:107049312..107049315,-#_b6e6553187b335dbd3f83f2c275fc4eb | p2@IGHV3-53 |
| 5.42e-195 | FFCP PHASE1:Hg19::chr16:12334592..12334599,+#_b6e6553187b335dbd3f83f2c275fc4eb | p@chr16:12334592..12334599, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr16:12337006..12337010,+#_b6e6553187b335dbd3f83f2c275fc4eb | p@chr16:12337006..12337010, + |
| 5.42e-195 | FFCP PHASE2:Hg19::chr12:53200416..53200421,+#_b6e6553187b335dbd3f83f2c275fc4eb | p7@CU692075 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:31611454..31611461,+#_49e834bd61f3c79f086d9d06886b1bec | p8@BPIFB6 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr19:14662395..14662414,+#_49e834bd61f3c79f086d9d06886b1bec | p@chr19:14662395..14662414, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_49e834bd61f3c79f086d9d06886b1bec | p@chr7:25361115..25361117, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr6:168095835..168095838,-#_49e834bd61f3c79f086d9d06886b1bec | p@chr6:168095835..168095838, - |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:1263622..1263627,+#_49e834bd61f3c79f086d9d06886b1bec | p@chr11:1263622..1263627, + |
| 9.37e-99 | FFCP PHASE2:Hg19::chr20:31611186..31611191,+#_49e834bd61f3c79f086d9d06886b1bec | p10@BPIFB6 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:31611454..31611461,+#_49e834bd61f3c79f086d9d06886b1bec | p8@BPIFB6 |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:1263622..1263627,+#_49e834bd61f3c79f086d9d06886b1bec | p@chr11:1263622..1263627, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_49e834bd61f3c79f086d9d06886b1bec | p@chr7:25361115..25361117, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr6:168095835..168095838,-#_49e834bd61f3c79f086d9d06886b1bec | p@chr6:168095835..168095838, - |
| 9.37e-99 | FFCP PHASE2:Hg19::chr19:14662395..14662414,+#_49e834bd61f3c79f086d9d06886b1bec | p@chr19:14662395..14662414, + |
| 9.37e-99 | FFCP PHASE1:Hg19::chr20:31611186..31611191,+#_49e834bd61f3c79f086d9d06886b1bec | p10@BPIFB6 |
| 9.37e-99 | FFCP PHASE1:Hg19::chr11:1249994..1249999,+#_49e834bd61f3c79f086d9d06886b1bec | p30@MUC5B |
| 9.37e-99 | FFCP PHASE2:Hg19::chr11:1249994..1249999,+#_49e834bd61f3c79f086d9d06886b1bec | p30@MUC5B |
| 2.55e-98 | FFCP PHASE1:Hg19::chr10:135337234..135337244,-#_fd1bf2cd51d2a503fbdda2d528d8b775 | p@chr10:135337234..135337244, - |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_fd1bf2cd51d2a503fbdda2d528d8b775 | p@chr11:1263382..1263385, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr10:135337234..135337244,-#_fd1bf2cd51d2a503fbdda2d528d8b775 | p@chr10:135337234..135337244, - |
| 2.55e-98 | FFCP PHASE2:Hg19::chr16:70602961..70602972,+#_fd1bf2cd51d2a503fbdda2d528d8b775 | p@chr16:70602961..70602972, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_fd1bf2cd51d2a503fbdda2d528d8b775 | p@chr11:1263382..1263385, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr12:52478564..52478569,+#_fd1bf2cd51d2a503fbdda2d528d8b775 | p@chr12:52478564..52478569, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_fd1bf2cd51d2a503fbdda2d528d8b775 | p@chr11:1260725..1260734, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_fd1bf2cd51d2a503fbdda2d528d8b775 | p30@RPRD1B |
| 2.55e-98 | FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_fd1bf2cd51d2a503fbdda2d528d8b775 | p@chr11:1260725..1260734, + |
| 2.55e-98 | FFCP PHASE2:Hg19::chr4:8437851..8437881,+#_fd1bf2cd51d2a503fbdda2d528d8b775 | p6@METTL19 |
| 2.55e-98 | FFCP PHASE1:Hg19::chr16:70602961..70602972,+#_fd1bf2cd51d2a503fbdda2d528d8b775 | p@chr16:70602961..70602972, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_fd1bf2cd51d2a503fbdda2d528d8b775 | p30@RPRD1B |
| 2.55e-98 | FFCP PHASE1:Hg19::chr12:52478564..52478569,+#_fd1bf2cd51d2a503fbdda2d528d8b775 | p@chr12:52478564..52478569, + |
| 2.55e-98 | FFCP PHASE1:Hg19::chr4:8437851..8437881,+#_fd1bf2cd51d2a503fbdda2d528d8b775 | p6@METTL19 |
| 1.23e-66 | FFCP PHASE2:Hg19::chr12:52478546..52478552,+#_c955a5017df4e7c01a47a49045592bd5 | p@chr12:52478546..52478552, + |
| 1.23e-66 | FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_c955a5017df4e7c01a47a49045592bd5 | p2@FCRL4 |
| 1.23e-66 | FFCP PHASE1:Hg19::chr12:52478546..52478552,+#_c955a5017df4e7c01a47a49045592bd5 | p@chr12:52478546..52478552, + |
| 1.23e-66 | FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_c955a5017df4e7c01a47a49045592bd5 | p2@FCRL4 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr11:1265985..1265990,+#_0c3e315a6ceada3c4c00313d369090dd | p@chr11:1265985..1265990, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr14:103560509..103560517,+#_0c3e315a6ceada3c4c00313d369090dd | p@chr14:103560509..103560517, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:62321640..62321645,+#_0c3e315a6ceada3c4c00313d369090dd | p1@BC131817 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr14:103560509..103560517,+#_0c3e315a6ceada3c4c00313d369090dd | p@chr14:103560509..103560517, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_0c3e315a6ceada3c4c00313d369090dd | p@chr13:107026326..107026335, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_0c3e315a6ceada3c4c00313d369090dd | p@chr13:107026326..107026335, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr20:31612754..31612763,+#_0c3e315a6ceada3c4c00313d369090dd | p@chr20:31612754..31612763, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:62321640..62321645,+#_0c3e315a6ceada3c4c00313d369090dd | p1@BC131817 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr19:36640447..36640459,+#_0c3e315a6ceada3c4c00313d369090dd | p@chr19:36640447..36640459, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr20:31612754..31612763,+#_0c3e315a6ceada3c4c00313d369090dd | p@chr20:31612754..31612763, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr11:1265985..1265990,+#_0c3e315a6ceada3c4c00313d369090dd | p@chr11:1265985..1265990, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr19:36640447..36640459,+#_0c3e315a6ceada3c4c00313d369090dd | p@chr19:36640447..36640459, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr16:69418649..69418659, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr18:29006845..29006854,-#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr18:29006845..29006854, - |
| 4.66e-66 | FFCP PHASE2:Hg19::chr6:30954084..30954093,-#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr6:30954084..30954093, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr1:152382640..152382645,+#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr1:152382640..152382645, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:187957664..187957675,+#_c297bf8c1a725ba2e7b46347a02b7525 | p58@LPP |
| 4.66e-66 | FFCP PHASE2:Hg19::chr18:49921251..49921263,+#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr18:49921251..49921263, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr12:53673418..53673427,+#_c297bf8c1a725ba2e7b46347a02b7525 | p9@ESPL1 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr3:124535316..124535340, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr16:69418649..69418659, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr6:30954084..30954093,-#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr6:30954084..30954093, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr19:51530837..51530842,-#_c297bf8c1a725ba2e7b46347a02b7525 | p10@KLK11 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:187957646..187957656,+#_c297bf8c1a725ba2e7b46347a02b7525 | p43@LPP |
| 4.66e-66 | FFCP PHASE2:Hg19::chr18:29006845..29006854,-#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr18:29006845..29006854, - |
| 4.66e-66 | FFCP PHASE1:Hg19::chr18:49921251..49921263,+#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr18:49921251..49921263, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr11:1283367..1283377,+#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr11:1283367..1283377, + |
| 4.66e-66 | FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_c297bf8c1a725ba2e7b46347a02b7525 | p58@LPP |
| 4.66e-66 | FFCP PHASE2:Hg19::chr1:152382640..152382645,+#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr1:152382640..152382645, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr3:124535316..124535340, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr12:53673418..53673427,+#_c297bf8c1a725ba2e7b46347a02b7525 | p9@ESPL1 |
| 4.66e-66 | FFCP PHASE2:Hg19::chr11:1283367..1283377,+#_c297bf8c1a725ba2e7b46347a02b7525 | p@chr11:1283367..1283377, + |
| 4.66e-66 | FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_c297bf8c1a725ba2e7b46347a02b7525 | p43@LPP |
| 4.66e-66 | FFCP PHASE2:Hg19::chr19:51530837..51530842,-#_c297bf8c1a725ba2e7b46347a02b7525 | p10@KLK11 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr4:185197096..185197107,-#_20b8d069e21e7c51dab0fd8f0b4afd53 | p@chr4:185197096..185197107, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr11:1262797..1262805,+#_20b8d069e21e7c51dab0fd8f0b4afd53 | p@chr11:1262797..1262805, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr14:106237005..106237028,+#_20b8d069e21e7c51dab0fd8f0b4afd53 | p@chr14:106237005..106237028, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr19:51531241..51531252,-#_20b8d069e21e7c51dab0fd8f0b4afd53 | p9@KLK11 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr8:101661845..101661855,-#_20b8d069e21e7c51dab0fd8f0b4afd53 | p3@SNX31 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr20:36694117..36694150,+#_20b8d069e21e7c51dab0fd8f0b4afd53 | p24@RPRD1B |
| 1.46e-50 | FFCP PHASE1:Hg19::chr14:106237005..106237028,+#_20b8d069e21e7c51dab0fd8f0b4afd53 | p@chr14:106237005..106237028, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr5:66194621..66194633,+#_20b8d069e21e7c51dab0fd8f0b4afd53 | p@chr5:66194621..66194633, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr2:40136465..40136469,+#_20b8d069e21e7c51dab0fd8f0b4afd53 | p@chr2:40136465..40136469, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr20:36694117..36694150,+#_20b8d069e21e7c51dab0fd8f0b4afd53 | p24@RPRD1B |
| 1.46e-50 | FFCP PHASE1:Hg19::chr2:40136465..40136469,+#_20b8d069e21e7c51dab0fd8f0b4afd53 | p@chr2:40136465..40136469, + |
| 1.46e-50 | FFCP PHASE2:Hg19::chr4:185197096..185197107,-#_20b8d069e21e7c51dab0fd8f0b4afd53 | p@chr4:185197096..185197107, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr5:66194621..66194633,+#_20b8d069e21e7c51dab0fd8f0b4afd53 | p@chr5:66194621..66194633, + |
| 1.46e-50 | FFCP PHASE1:Hg19::chr19:51531241..51531252,-#_20b8d069e21e7c51dab0fd8f0b4afd53 | p9@KLK11 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr8:101661845..101661855,-#_20b8d069e21e7c51dab0fd8f0b4afd53 | p3@SNX31 |
| 1.46e-50 | FFCP PHASE1:Hg19::chr11:1262797..1262805,+#_20b8d069e21e7c51dab0fd8f0b4afd53 | p@chr11:1262797..1262805, + |
| 2.42e-50 | FFCP PHASE2:Hg19::chr20:31611160..31611167,+#_e896a45235254f3ee2784711b2371302 | p5@BPIFB6 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr3:45065078..45065085,-#_e896a45235254f3ee2784711b2371302 | p@chr3:45065078..45065085, - |
| 2.42e-50 | FFCP PHASE2:Hg19::chr14:106746150..106746153,-#_e896a45235254f3ee2784711b2371302 | p1@IGHV3-25 |
| 2.42e-50 | FFCP PHASE1:Hg19::chr16:70602928..70602938,+#_e896a45235254f3ee2784711b2371302 | p@chr16:70602928..70602938, + |
