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{{UBERON
{{UBERON
|id=UBERON:0002394
|alt_id=UBERON:FMA_9706-MA_0000354-XAO_0000134
|name=bile duct
|namespace=
|def="Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
|xref=AAO:0011019;;BTO:0000122;;EHDAA2:0000741;;EV:0100091;;FMA:9706;;GAID:280;;http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png;;MA:0000354;;MESH:A.03.159.183;;ncithesaurus:Bile_Duct;;OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA;;SCTID:276157007;;VHOG:0000212;;XAO:0000134
|is_a=UBERON:0003928;;UBERON:0004119
|synonym="gall duct" RELATED [BTO:0000122];;"hepatic duct" RELATED []
|comment=The path is as follows: Bile canaliculi 遶� Canals of Hering 遶� interlobular bile ducts 遶� intrahepatic bile ducts 遶� left and right hepatic ducts merge to form 遶� common hepatic duct exits liver and joins 遶� cystic duct (from gall bladder) forming 遶� common bile duct 遶� joins with pancreatic duct 遶� forming ampulla of Vater 遶� enters duodenum [WP]
|comment=The path is as follows: Bile canaliculi 遶� Canals of Hering 遶� interlobular bile ducts 遶� intrahepatic bile ducts 遶� left and right hepatic ducts merge to form 遶� common hepatic duct exits liver and joins 遶� cystic duct (from gall bladder) forming 遶� common bile duct 遶� joins with pancreatic duct 遶� forming ampulla of Vater 遶� enters duodenum [WP]
|alt_id=UBERON:FMA_9706-MA_0000354-XAO_0000134
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
|subset=uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0008835
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002394
|is_a=UBERON:0003928 ;;UBERON:0004119
|is_obsolete=
|located_in=
|located_in=
|part_of=
|name=bile duct
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001173;;UBERON:0002294
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=uberon_slim
|preceded_by=
|synonym="gall duct" RELATED [BTO:0000122];;"hepatic duct" RELATED []
|union_of=
|xref=AAO:0011019;;BTO:0000122;;EHDAA2:0000741;;EV:0100091;;FMA:9706;;GAID:280;;http://upload.wikimedia.org/wikipedia/commons/5/5d/Digestive_system_showing_bile_duct.png;;http://upload.wikimedia.org/wikipedia/commons/thumb/5/5d/Digestive_system_showing_bile_duct.png/200px-Digestive_system_showing_bile_duct.png;;MA:0000354;;MESH:A.03.159.183;;ncithesaurus:Bile_Duct;;OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA;;SCTID:276157007;;VHOG:0000212;;XAO:0000134
}}
}}

Latest revision as of 17:31, 12 September 2014

Name:bile duct
Namespace:FANTOM
Definition:"Duct that carries bile from the liver to the small intestine." [Wikipedia:Bile_duct, ZFA:0001100]
Xrefs:
links:

AAO:0011019
BTO:0000122
EHDAA2:0000741
EV:0100091
FMA:9706
GAID:280
[ Digestive_system_showing_bile_duct.png Digestive_system_showing_bile_duct.png]
[ 200px-Digestive_system_showing_bile_duct.png 200px-Digestive_system_showing_bile_duct.png]
MA:0000354
MESH:A.03.159.183
ncithesaurus:Bile_Duct
OpenCyc:Mx4rvdCds5wpEbGdrcN5Y29ycA
SCTID:276157007
VHOG:0000212

XAO:0000134
Synonyms: "gall duct" RELATED [BTO:0000122]
"hepatic duct" RELATED []
Comments:The path is as follows: Bile canaliculi 遶� Canals of Hering 遶� interlobular bile ducts 遶� intrahepatic bile ducts 遶� left and right hepatic ducts merge to form 遶� common hepatic duct exits liver and joins 遶� cystic duct (from gall bladder) forming 遶� common bile duct 遶� joins with pancreatic duct 遶� forming ampulla of Vater 遶� enters duodenum [WP]
Alt_id: UBERON:FMA_9706-MA_0000354-XAO_0000134
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0003928(digestive system duct),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0008835(hepatic diverticulum)
part_of:UBERON:0001173(biliary tree),UBERON:0002294(biliary system)



Children

is a:UBERON:0003703 (extrahepatic bile duct),UBERON:0003704 (intrahepatic bile duct),UBERON:0005171 (hepatic duct)
derives from:FF:0103910 (bile duct cancer cell line sample)
part of:UBERON:0004820 (bile duct epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002394 (bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

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