UBERON:0002472: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id=UBERON:MA_0002717-MIAA_0000093 | ||
|comment=Naming conventions for pod terms under discussion within phenoscape group | |comment=Naming conventions for pod terms under discussion within phenoscape group | ||
|created_by= | |created_by= | ||
| | |def="Limb segment that is the proximal part of the limb (e.g. between shoulder and elbow)." [] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0002472 | |||
|is_a=UBERON:0002529 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=stylopod | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0002101 | |part_of=UBERON:0002101 | ||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=uberon_slim | ||
| | |synonym="propodium" EXACT [MA:th];;"proximal free limb segment" EXACT [FMA:83014];;"proximal part of limb" BROAD [];;"stylopodial limb segment" EXACT [MA:th];;"stylopodium" EXACT [] | ||
|union_of= | |||
|xref=EFO:0000879;;FMA:83014;;MA:0002717;;MAT:0000093;;MIAA:0000093 | |||
}} | }} | ||
Latest revision as of 17:32, 12 September 2014
| Name: | stylopod | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "Limb segment that is the proximal part of the limb (e.g. between shoulder and elbow)." [] | ||
| Xrefs: |
| ||
| Synonyms: |
"propodium" EXACT [MA:th] "proximal free limb segment" EXACT [FMA:83014] "proximal part of limb" BROAD [] "stylopodial limb segment" EXACT [MA:th] "stylopodium" EXACT [] | ||
| Comments: | Naming conventions for pod terms under discussion within phenoscape group | ||
| Alt_id: | UBERON:MA_0002717-MIAA_0000093 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002529(limb segment) |
|---|---|
| part_of: | UBERON:0002101(limb) |
Children
| is a: | UBERON:0000376 (hindlimb stylopod) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 1350-25C3 (bone (os femoris), neonate N20)
- 1389-42C2 (muscle (biceps femoris), neonate N30)
- 1525-43A6 (bone (os femoris), neonate N16)
- 1985-43F5 (bone (os femoris), neonate N02)
- 56-12G2 (bone (os femoris), adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002472 (stylopod), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.65e-69 | FFCP PHASE2:Mm9::chr8:75097542..75097549,+#_474ea998ea570576bf508d9ba813c6f2 | p@chr8:75097542..75097549, + |
| 1.65e-69 | FFCP PHASE2:Mm9::chr2:32482372..32482381,+#_474ea998ea570576bf508d9ba813c6f2 | p@chr2:32482372..32482381, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr8:75097542..75097549,+#_474ea998ea570576bf508d9ba813c6f2 | p@chr8:75097542..75097549, + |
| 1.65e-69 | FFCP PHASE1:Mm9::chr2:32482372..32482381,+#_474ea998ea570576bf508d9ba813c6f2 | p@chr2:32482372..32482381, + |
| 4.2e-56 | FFCP PHASE2:Mm9::chr1:174140324..174140335,-#_2edfcb4a23474d1feba0bd15538d0b8c | p@chr1:174140324..174140335, - |
| 4.2e-56 | FFCP PHASE2:Mm9::chr11:67063327..67063335,+#_2edfcb4a23474d1feba0bd15538d0b8c | p@chr11:67063327..67063335, + |
| 4.2e-56 | FFCP PHASE2:Mm9::chr16:24096441..24096449,+#_2edfcb4a23474d1feba0bd15538d0b8c | p@chr16:24096441..24096449, + |
| 4.2e-56 | FFCP PHASE1:Mm9::chr1:174140324..174140335,-#_2edfcb4a23474d1feba0bd15538d0b8c | p@chr1:174140324..174140335, - |
| 4.2e-56 | FFCP PHASE1:Mm9::chr11:67063327..67063335,+#_2edfcb4a23474d1feba0bd15538d0b8c | p@chr11:67063327..67063335, + |
| 4.2e-56 | FFCP PHASE1:Mm9::chr16:24096441..24096449,+#_2edfcb4a23474d1feba0bd15538d0b8c | p@chr16:24096441..24096449, + |
| 5.81e-56 | FFCP PHASE2:Mm9::chr1:174143249..174143260,-#_18be4f42681d1fc785eea18115a1f252 | p@chr1:174143249..174143260, - |
| 5.81e-56 | FFCP PHASE1:Mm9::chr1:174143249..174143260,-#_18be4f42681d1fc785eea18115a1f252 | p@chr1:174143249..174143260, - |
| 1.64e-52 | FFCP PHASE2:Mm9::chr12:70396969..70396979,+#_d11a240ac4a687499e5548c1250919f6 | p@chr12:70396969..70396979, + |
| 1.64e-52 | FFCP PHASE1:Mm9::chr12:70396969..70396979,+#_d11a240ac4a687499e5548c1250919f6 | p@chr12:70396969..70396979, + |
| 1.54e-49 | FFCP PHASE2:Mm9::chr19:4876870..4876880,-#_f46185e3182a88605537e6dcfe45b888 | p@chr19:4876870..4876880, - |
| 1.54e-49 | FFCP PHASE1:Mm9::chr19:4876870..4876880,-#_f46185e3182a88605537e6dcfe45b888 | p@chr19:4876870..4876880, - |
| 1.49e-48 | FFCP PHASE1:Mm9::chr11:102130083..102130092,+#_d1c1900c3caf2f6e7af7a1f6e6523a6f | p3@Asb16 |
| 1.49e-48 | FFCP PHASE2:Mm9::chr11:102130083..102130092,+#_d1c1900c3caf2f6e7af7a1f6e6523a6f | p3@Asb16 |
| 3.7e-47 | FFCP PHASE2:Mm9::chr11:75409652..75409664,+#_6fea81ba798b4f0af548137e6ed9cb6a | p@chr11:75409652..75409664, + |
| 3.7e-47 | FFCP PHASE1:Mm9::chr11:75409652..75409664,+#_6fea81ba798b4f0af548137e6ed9cb6a | p@chr11:75409652..75409664, + |
| 1.43e-46 | FFCP PHASE2:Mm9::chr8:126415826..126415839,+#_5583b9a83f88b5fcfaf192c3870ba86c | p@chr8:126415826..126415839, + |
| 1.43e-46 | FFCP PHASE1:Mm9::chr8:126415826..126415839,+#_5583b9a83f88b5fcfaf192c3870ba86c | p@chr8:126415826..126415839, + |
| 3.43e-44 | FFCP PHASE1:Mm9::chr7:133604286..133604297,-#_cffd91768a1dd46c0494f5029a49e27f | p@chr7:133604286..133604297, - |
| 3.43e-44 | FFCP PHASE2:Mm9::chr7:133604286..133604297,-#_cffd91768a1dd46c0494f5029a49e27f | p@chr7:133604286..133604297, - |
| 1.74e-43 | FFCP PHASE1:Mm9::chr4:138365748..138365759,-#_c2f6c235544beebd52678fddd038614e | p5@Pla2g5 |
| 1.74e-43 | FFCP PHASE2:Mm9::chr4:138365748..138365759,-#_c2f6c235544beebd52678fddd038614e | p5@Pla2g5 |
| 1.46e-40 | FFCP PHASE1:Mm9::chr11:67056544..67056589,-#_c1972716b8199341297e9bada11dfaef | p@chr11:67056544..67056589, - |
| 1.46e-40 | FFCP PHASE2:Mm9::chr11:67056544..67056589,-#_c1972716b8199341297e9bada11dfaef | p@chr11:67056544..67056589, - |
| 1.84e-40 | FFCP PHASE1:Mm9::chr6:90552017..90552024,+#_ce397ef38b456b6d9d1153e4c1adadbe | p@chr6:90552017..90552024, + |
| 1.84e-40 | FFCP PHASE2:Mm9::chr6:90552017..90552024,+#_ce397ef38b456b6d9d1153e4c1adadbe | p@chr6:90552017..90552024, + |
| 2.32e-40 | FFCP PHASE1:Mm9::chr6:34436258..34436292,+#_4e923dc768f266491782dd56213fbee6 | p@chr6:34436258..34436292, + |
| 2.32e-40 | FFCP PHASE2:Mm9::chr6:34436258..34436292,+#_4e923dc768f266491782dd56213fbee6 | p@chr6:34436258..34436292, + |
| 3.69e-40 | FFCP PHASE2:Mm9::chr11:67069796..67069817,-#_f4c580d14a6248dae12262dcd95bbd06 | p@chr11:67069796..67069817, - |
| 3.69e-40 | FFCP PHASE1:Mm9::chr11:67069796..67069817,-#_f4c580d14a6248dae12262dcd95bbd06 | p@chr11:67069796..67069817, - |
| 4.64e-40 | FFCP PHASE2:Mm9::chr8:107702369..107702386,+#_f0fbf2eddb0e18b302588a49cabb0899 | p@chr8:107702369..107702386, + |
| 4.64e-40 | FFCP PHASE1:Mm9::chr8:107702369..107702386,+#_f0fbf2eddb0e18b302588a49cabb0899 | p@chr8:107702369..107702386, + |
| 7.27e-40 | FFCP PHASE1:Mm9::chr1:66991496..66991506,+#_af92e7d1a3b55ca7035a36e48d640f47 | p@chr1:66991496..66991506, + |
| 7.27e-40 | FFCP PHASE2:Mm9::chr11:67062759..67062768,+#_af92e7d1a3b55ca7035a36e48d640f47 | p@chr11:67062759..67062768, + |
| 7.27e-40 | FFCP PHASE2:Mm9::chr16:77077366..77077377,+#_af92e7d1a3b55ca7035a36e48d640f47 | p@chr16:77077366..77077377, + |
| 7.27e-40 | FFCP PHASE2:Mm9::chr1:174140351..174140357,-#_af92e7d1a3b55ca7035a36e48d640f47 | p@chr1:174140351..174140357, - |
| 7.27e-40 | FFCP PHASE2:Mm9::chr4:150276182..150276195,-#_af92e7d1a3b55ca7035a36e48d640f47 | p13@Park7 |
| 7.27e-40 | FFCP PHASE1:Mm9::chr16:77077366..77077377,+#_af92e7d1a3b55ca7035a36e48d640f47 | p@chr16:77077366..77077377, + |
| 7.27e-40 | FFCP PHASE1:Mm9::chr11:67059271..67059285,+#_af92e7d1a3b55ca7035a36e48d640f47 | p@chr11:67059271..67059285, + |
| 7.27e-40 | FFCP PHASE1:Mm9::chr4:150276182..150276195,-#_af92e7d1a3b55ca7035a36e48d640f47 | p13@Park7 |
| 7.27e-40 | FFCP PHASE1:Mm9::chr11:67062759..67062768,+#_af92e7d1a3b55ca7035a36e48d640f47 | p@chr11:67062759..67062768, + |
| 7.27e-40 | FFCP PHASE2:Mm9::chr11:67059271..67059285,+#_af92e7d1a3b55ca7035a36e48d640f47 | p@chr11:67059271..67059285, + |
| 7.27e-40 | FFCP PHASE2:Mm9::chr14:70207601..70207626,+#_af92e7d1a3b55ca7035a36e48d640f47 | p@chr14:70207601..70207626, + |
| 7.27e-40 | FFCP PHASE2:Mm9::chr1:66991496..66991506,+#_af92e7d1a3b55ca7035a36e48d640f47 | p@chr1:66991496..66991506, + |
| 7.27e-40 | FFCP PHASE1:Mm9::chr14:70207601..70207626,+#_af92e7d1a3b55ca7035a36e48d640f47 | p@chr14:70207601..70207626, + |
| 7.27e-40 | FFCP PHASE1:Mm9::chr1:174140351..174140357,-#_af92e7d1a3b55ca7035a36e48d640f47 | p@chr1:174140351..174140357, - |
| 9.85e-40 | FFCP PHASE1:Mm9::chr11:67068279..67068289,+#_c4f219881be24a5c8d828f0e43bc2646 | p@chr11:67068279..67068289, + |
| 9.85e-40 | FFCP PHASE1:Mm9::chr2:52119179..52119188,-#_c4f219881be24a5c8d828f0e43bc2646 | p@chr2:52119179..52119188, - |
| 9.85e-40 | FFCP PHASE2:Mm9::chr7:12485281..12485286,+#_c4f219881be24a5c8d828f0e43bc2646 | p@chr7:12485281..12485286, + |
| 9.85e-40 | FFCP PHASE1:Mm9::chr7:133602405..133602416,-#_c4f219881be24a5c8d828f0e43bc2646 | p@chr7:133602405..133602416, - |
| 9.85e-40 | FFCP PHASE2:Mm9::chr7:133590511..133590515,-#_c4f219881be24a5c8d828f0e43bc2646 | p@chr7:133590511..133590515, - |
| 9.85e-40 | FFCP PHASE2:Mm9::chr2:52119179..52119188,-#_c4f219881be24a5c8d828f0e43bc2646 | p@chr2:52119179..52119188, - |
| 9.85e-40 | FFCP PHASE2:Mm9::chr7:133602405..133602416,-#_c4f219881be24a5c8d828f0e43bc2646 | p@chr7:133602405..133602416, - |
| 9.85e-40 | FFCP PHASE2:Mm9::chr7:133591409..133591416,-#_c4f219881be24a5c8d828f0e43bc2646 | p11@Atp2a1 |
| 9.85e-40 | FFCP PHASE1:Mm9::chr7:133591409..133591416,-#_c4f219881be24a5c8d828f0e43bc2646 | p11@Atp2a1 |
| 9.85e-40 | FFCP PHASE1:Mm9::chr7:12485281..12485286,+#_c4f219881be24a5c8d828f0e43bc2646 | p@chr7:12485281..12485286, + |
| 9.85e-40 | FFCP PHASE1:Mm9::chr7:133590511..133590515,-#_c4f219881be24a5c8d828f0e43bc2646 | p@chr7:133590511..133590515, - |
| 9.85e-40 | FFCP PHASE2:Mm9::chr11:67068279..67068289,+#_c4f219881be24a5c8d828f0e43bc2646 | p@chr11:67068279..67068289, + |
| 1.33e-39 | FFCP PHASE1:Mm9::chr11:77624716..77624729,+#_37025bd21988bab9b2c1065f583392ee | p26@Myo18a |
| 1.33e-39 | FFCP PHASE2:Mm9::chr11:77624716..77624729,+#_37025bd21988bab9b2c1065f583392ee | p26@Myo18a |
| 1.8e-39 | FFCP PHASE1:Mm9::chr9:21934585..21934591,-#_c5e44ff4c222a1b727c212c7c01553df | p@chr9:21934585..21934591, - |
| 1.8e-39 | FFCP PHASE2:Mm9::chr9:21934585..21934591,-#_c5e44ff4c222a1b727c212c7c01553df | p@chr9:21934585..21934591, - |
| 1.01e-37 | FFCP PHASE2:Mm9::chr2:32482387..32482399,+#_f0eda8310611e8ead3b2abad8a1e107e | p@chr2:32482387..32482399, + |
| 1.01e-37 | FFCP PHASE1:Mm9::chr2:32482387..32482399,+#_f0eda8310611e8ead3b2abad8a1e107e | p@chr2:32482387..32482399, + |
| 5.61e-37 | FFCP PHASE2:Mm9::chr7:133590998..133591009,-#_cc37f420ab942d368c981928f9a22c66 | p@chr7:133590998..133591009, - |
| 5.61e-37 | FFCP PHASE1:Mm9::chr7:133590998..133591009,-#_cc37f420ab942d368c981928f9a22c66 | p@chr7:133590998..133591009, - |
| 6.65e-37 | FFCP PHASE2:Mm9::chr18:60751417..60751432,-#_dc3525572e0530cc977c93bfe30dd01e | p2@Myoz3 |
| 6.65e-37 | FFCP PHASE1:Mm9::chr18:60751417..60751432,-#_dc3525572e0530cc977c93bfe30dd01e | p2@Myoz3 |
| 9.33e-37 | FFCP PHASE1:Mm9::chr11:67051354..67051366,+#_09de7d5152b226b667b80cd457762b6b | p2@Myh4 |
| 9.33e-37 | FFCP PHASE2:Mm9::chr11:67051354..67051366,+#_09de7d5152b226b667b80cd457762b6b | p2@Myh4 |
| 5.77e-36 | FFCP PHASE1:Mm9::chr2:180890942..180890956,-#_70ecd5b39c335f04aa84da2a22fab8c3 | p@chr2:180890942..180890956, - |
| 5.77e-36 | FFCP PHASE2:Mm9::chr2:180890942..180890956,-#_70ecd5b39c335f04aa84da2a22fab8c3 | p@chr2:180890942..180890956, - |
| 7.08e-36 | FFCP PHASE2:Mm9::chr4:99628094..99628114,+#_a61301cafa788461b9e5624350006e12 | p6@Pgm2 |
| 7.08e-36 | FFCP PHASE1:Mm9::chr12:15936419..15936439,+#_a61301cafa788461b9e5624350006e12 | p@chr12:15936419..15936439, + |
| 7.08e-36 | FFCP PHASE1:Mm9::chr4:99628094..99628114,+#_a61301cafa788461b9e5624350006e12 | p6@Pgm2 |
| 7.08e-36 | FFCP PHASE2:Mm9::chr12:15936419..15936439,+#_a61301cafa788461b9e5624350006e12 | p@chr12:15936419..15936439, + |
| 1.3e-35 | FFCP PHASE1:Mm9::chr2:76729527..76729535,-#_b63486a4a0557171a10752d21784b77d | p@chr2:76729527..76729535, - |
| 1.3e-35 | FFCP PHASE2:Mm9::chr7:58766361..58766370,+#_b63486a4a0557171a10752d21784b77d | p3@Ano5 |
| 1.3e-35 | FFCP PHASE2:Mm9::chr2:76729527..76729535,-#_b63486a4a0557171a10752d21784b77d | p@chr2:76729527..76729535, - |
| 1.3e-35 | FFCP PHASE1:Mm9::chr7:58766361..58766370,+#_b63486a4a0557171a10752d21784b77d | p3@Ano5 |
| 1.42e-35 | FFCP PHASE1:Mm9::chr19:4871076..4871091,+#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr19:4871076..4871091, + |
| 1.42e-35 | FFCP PHASE1:Mm9::chr11:67064461..67064462,-#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr11:67064461..67064462, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr4:150281470..150281484,-#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr4:150281470..150281484, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr11:67066194..67066212,-#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr11:67066194..67066212, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr11:67064461..67064462,-#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr11:67064461..67064462, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr2:180892493..180892512,-#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr2:180892493..180892512, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr11:75572402..75572409,+#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr11:75572402..75572409, + |
| 1.42e-35 | FFCP PHASE1:Mm9::chr7:134353840..134353843,-#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr7:134353840..134353843, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr7:51761564..51761580,-#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr7:51761564..51761580, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr18:61123512..61123517,+#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr18:61123512..61123517, + |
| 1.42e-35 | FFCP PHASE2:Mm9::chr5:130349139..130349144,-#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr5:130349139..130349144, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr2:180892493..180892512,-#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr2:180892493..180892512, - |
| 1.42e-35 | FFCP PHASE2:Mm9::chr11:66928384..66928391,-#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr11:66928384..66928391, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr11:75572402..75572409,+#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr11:75572402..75572409, + |
| 1.42e-35 | FFCP PHASE1:Mm9::chr5:130349139..130349144,-#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr5:130349139..130349144, - |
| 1.42e-35 | FFCP PHASE1:Mm9::chr11:66928384..66928391,-#_aa91ac73eeaffe5ab44154e270b93b39 | p@chr11:66928384..66928391, - |
