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{{UBERON
{{UBERON
|id=UBERON:0002546
|alt_id=UBERON:MIAA_0000369-XAO_0000305
|name=cranial placode
|namespace=
|def="Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" [http://www.ncbi.nlm.nih.gov/books/NBK53175/, https://github.com/seger/aao/issues/4, UBERON:cjm]
|xref=AAO:0010466;;MAT:0000369;;MIAA:0000369;;XAO:0000305
|is_a=UBERON:0005085
|synonym="placode" BROAD [Wikipedia:Placode]
|comment=Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
|comment=Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
|alt_id=UBERON:MIAA_0000369-XAO_0000305
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" [http://www.ncbi.nlm.nih.gov/books/NBK53175/, https://github.com/seger/aao/issues/4, UBERON:cjm]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0002546
|is_a=UBERON:0005085
|is_obsolete=
|located_in=
|located_in=
|name=cranial placode
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000033
|part_of=UBERON:0000033
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="placode" BROAD [Wikipedia:Placode]
|union_of=
|xref=AAO:0010466;;MAT:0000369;;MIAA:0000369;;XAO:0000305
}}
}}

Latest revision as of 17:33, 12 September 2014

Name:cranial placode
Namespace:FANTOM
Definition:"Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" https://github.com/seger/aao/issues/4, UBERON:cjm
Xrefs:
links:

AAO:0010466
MAT:0000369
MIAA:0000369

XAO:0000305
Synonyms: "placode" BROAD [Wikipedia:Placode]
Comments:Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
Alt_id: UBERON:MIAA_0000369-XAO_0000305

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005085(ectodermal placode)
part_of:UBERON:0000033(head)



Children

is a:UBERON:0003073 (lens placode),UBERON:0009122 (adenohypophyseal placode),UBERON:0009955 (neurogenic placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002546 (cranial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_e751c663870c04b3e9be3a6d17109921p5@Otogl
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_e751c663870c04b3e9be3a6d17109921p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_e751c663870c04b3e9be3a6d17109921p1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr17:31335869..31335899,-#_e751c663870c04b3e9be3a6d17109921p1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_e751c663870c04b3e9be3a6d17109921p@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_e751c663870c04b3e9be3a6d17109921p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_e751c663870c04b3e9be3a6d17109921p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_e751c663870c04b3e9be3a6d17109921p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_e751c663870c04b3e9be3a6d17109921p1@Otog
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_e751c663870c04b3e9be3a6d17109921p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_e751c663870c04b3e9be3a6d17109921p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_e751c663870c04b3e9be3a6d17109921p@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_e751c663870c04b3e9be3a6d17109921p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr18:59222033..59222043,+#_e751c663870c04b3e9be3a6d17109921p7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_e751c663870c04b3e9be3a6d17109921p@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_e751c663870c04b3e9be3a6d17109921p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_e751c663870c04b3e9be3a6d17109921p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr5:68423014..68423037,+#_e751c663870c04b3e9be3a6d17109921p1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_e751c663870c04b3e9be3a6d17109921p7@Glt25d2
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_e751c663870c04b3e9be3a6d17109921p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_e751c663870c04b3e9be3a6d17109921p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_e751c663870c04b3e9be3a6d17109921p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_e751c663870c04b3e9be3a6d17109921p10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_e751c663870c04b3e9be3a6d17109921p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_e751c663870c04b3e9be3a6d17109921p@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_e751c663870c04b3e9be3a6d17109921p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_e751c663870c04b3e9be3a6d17109921p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_e751c663870c04b3e9be3a6d17109921p5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr7:141605556..141605563,-#_e751c663870c04b3e9be3a6d17109921p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_e751c663870c04b3e9be3a6d17109921p@chr1:194818647..194818660, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207998..42208009,-#_e751c663870c04b3e9be3a6d17109921p6@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_e751c663870c04b3e9be3a6d17109921p3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_e751c663870c04b3e9be3a6d17109921p3@Strc
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_e751c663870c04b3e9be3a6d17109921p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_e751c663870c04b3e9be3a6d17109921p11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_e751c663870c04b3e9be3a6d17109921p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:42207397..42207408,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42207397..42207408, -
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_e751c663870c04b3e9be3a6d17109921p@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_e751c663870c04b3e9be3a6d17109921p@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr3:154459246..154459253,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459246..154459253, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_e751c663870c04b3e9be3a6d17109921p@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_e751c663870c04b3e9be3a6d17109921p6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_e751c663870c04b3e9be3a6d17109921p1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_e751c663870c04b3e9be3a6d17109921p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_e751c663870c04b3e9be3a6d17109921p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_e751c663870c04b3e9be3a6d17109921p@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_e751c663870c04b3e9be3a6d17109921p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_e751c663870c04b3e9be3a6d17109921p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_e751c663870c04b3e9be3a6d17109921p1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_e751c663870c04b3e9be3a6d17109921p@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr6:29428397..29428407,-#_e751c663870c04b3e9be3a6d17109921p@chr6:29428397..29428407, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_e751c663870c04b3e9be3a6d17109921p1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr10:97109753..97109764,+#_e751c663870c04b3e9be3a6d17109921p3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_e751c663870c04b3e9be3a6d17109921p5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_e751c663870c04b3e9be3a6d17109921p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_e751c663870c04b3e9be3a6d17109921p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr15:58022966..58022995,-#_e751c663870c04b3e9be3a6d17109921p@chr15:58022966..58022995, -
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_e751c663870c04b3e9be3a6d17109921p21@Espn
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_e751c663870c04b3e9be3a6d17109921p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_e751c663870c04b3e9be3a6d17109921p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251606..113251613, +
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_e751c663870c04b3e9be3a6d17109921p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_e751c663870c04b3e9be3a6d17109921p@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr8:13425469..13425503,+#_e751c663870c04b3e9be3a6d17109921p@chr8:13425469..13425503, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255289..55255299,+#_e751c663870c04b3e9be3a6d17109921p2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_e751c663870c04b3e9be3a6d17109921p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr15:85334335..85334353,+#_e751c663870c04b3e9be3a6d17109921p@chr15:85334335..85334353, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_e751c663870c04b3e9be3a6d17109921p5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_e751c663870c04b3e9be3a6d17109921p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811590..69811601,+#_e751c663870c04b3e9be3a6d17109921p1@Otol1
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_e751c663870c04b3e9be3a6d17109921p2@Tectb
1.87e-86FFCP PHASE1:Mm9::chr10:80806047..80806059,-#_e751c663870c04b3e9be3a6d17109921p4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_e751c663870c04b3e9be3a6d17109921p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_e751c663870c04b3e9be3a6d17109921p2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983198..13983203, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_e751c663870c04b3e9be3a6d17109921p@chr13:48087761..48087775, -
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_e751c663870c04b3e9be3a6d17109921p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_e751c663870c04b3e9be3a6d17109921p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_e751c663870c04b3e9be3a6d17109921p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr9:92087926..92087938,+#_e751c663870c04b3e9be3a6d17109921p2@Plscr5
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_e751c663870c04b3e9be3a6d17109921p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_e751c663870c04b3e9be3a6d17109921p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_e751c663870c04b3e9be3a6d17109921p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_e751c663870c04b3e9be3a6d17109921p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr5:28035962..28035983,+#_e751c663870c04b3e9be3a6d17109921p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_e751c663870c04b3e9be3a6d17109921p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr16:96494788..96494801,+#_e751c663870c04b3e9be3a6d17109921p12@B3galt5
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_e751c663870c04b3e9be3a6d17109921p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr1:94627290..94627299,-#_e751c663870c04b3e9be3a6d17109921p@chr1:94627290..94627299, -
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_e751c663870c04b3e9be3a6d17109921p@chr4:63079735..63079745, -

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