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{{UBERON
{{UBERON
|id=UBERON:0003258
|alt_id=
|name=endoderm of foregut
|namespace=
|def="An endoderm that is part of a foregut [Obol]." [OBOL:automatic]
|xref=EHDAA:524;;EHDAA2:0000566
|is_a=UBERON:0000077;;UBERON:0000925
|synonym="foregut endoderm" EXACT [OBOL:automatic]
|comment=TODO - check
|comment=TODO - check
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="An endoderm that is part of a foregut [Obol]." [OBOL:automatic]
|subset=
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0000925
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003258
|is_a=UBERON:0000490 ;;UBERON:0005911 ;;UBERON:0015833
|is_obsolete=
|located_in=
|located_in=
|name=endoderm of foregut
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001041
|part_of=UBERON:0001041
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=
|synonym="foregut endoderm" EXACT [OBOL:automatic]
|union_of=
|xref=EHDAA2:0000566;;EHDAA:524
}}
}}

Latest revision as of 17:39, 12 September 2014

Name:endoderm of foregut
Namespace:FANTOM
Definition:"An endoderm that is part of a foregut [Obol]." [OBOL:automatic]
Xrefs:
links:

EHDAA2:0000566

EHDAA:524
Synonyms: "foregut endoderm" EXACT [OBOL:automatic]
Comments:TODO - check

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000490(unilaminar epithelium),UBERON:0005911(endo-epithelium),UBERON:0015833(foregut epithelium)
develops_from:UBERON:0000925(endoderm)
part_of:UBERON:0001041(foregut)



Children

is a:UBERON:0004117 (pharyngeal pouch),UBERON:0007690 (early pharyngeal endoderm)
part of:UBERON:0008947 (respiratory primordium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003258 (endoderm of foregut), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.21e-66FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_951a1ec5d60f9a585b9bb5557d81bf97p4@Tbx4
1.21e-66FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_951a1ec5d60f9a585b9bb5557d81bf97p4@Tbx4
4.71e-66FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_e68e02132d734081ae71742a5a26395ap@chr9:20829911..20829920, +
4.71e-66FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_e68e02132d734081ae71742a5a26395ap@chr9:20829911..20829920, +
1.06e-62FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_a27d5c37d44a01a76dafac683f35cb0cp1@ENSMUST00000134305
1.06e-62FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_a27d5c37d44a01a76dafac683f35cb0cp1@ENSMUST00000134305
1.52e-61FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_be65beddee7f988e0514772d1f9b2cabp1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.52e-61FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_be65beddee7f988e0514772d1f9b2cabp1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.91e-61FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_f7d5f7246390d740f93ef89097904eb2p6@Tbx4
1.91e-61FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_f7d5f7246390d740f93ef89097904eb2p6@Tbx4
5.56e-61FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_cacabe38f2faf8e6f503598ac83985cap@chr11:59457994..59457997, -
5.56e-61FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_cacabe38f2faf8e6f503598ac83985cap@chr12:57636003..57636017, -
5.56e-61FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_cacabe38f2faf8e6f503598ac83985cap@chr8:94878479..94878503, -
5.56e-61FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_cacabe38f2faf8e6f503598ac83985cap@chr4:138812977..138812992, +
5.56e-61FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_cacabe38f2faf8e6f503598ac83985cap@chr8:94878479..94878503, -
5.56e-61FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_cacabe38f2faf8e6f503598ac83985cap@chr12:57636003..57636017, -
5.56e-61FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_cacabe38f2faf8e6f503598ac83985cap@chr11:59457994..59457997, -
5.56e-61FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_cacabe38f2faf8e6f503598ac83985cap@chr12:57598716..57598720, -
5.56e-61FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_cacabe38f2faf8e6f503598ac83985cap@chr12:57598716..57598720, -
5.56e-61FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_cacabe38f2faf8e6f503598ac83985cap@chr4:138812977..138812992, +
1.35e-60FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_7f08c2635b5fe9941abaaae64eb31209p9@Nav2
1.35e-60FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_7f08c2635b5fe9941abaaae64eb31209p9@Nav2
2.87e-58FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_c2de279ce30ef2b071506486aed774d6p@chr12:57633887..57633899, -
2.87e-58FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_c2de279ce30ef2b071506486aed774d6p@chr12:57633887..57633899, -
1.23e-57FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_4cc1a9bc9aae600221beb27dac4449adp8@Nkx2-1
1.23e-57FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_4cc1a9bc9aae600221beb27dac4449adp8@Nkx2-1
1.37e-57FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_e7707349e061f0b165490d40adf75edfp2@E030019B13Rik
1.37e-57FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_e7707349e061f0b165490d40adf75edfp2@E030019B13Rik
1.53e-57FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_8afc95442496d483fc1e5bbd60123541p10@Nebl
1.53e-57FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_8afc95442496d483fc1e5bbd60123541p10@Nebl
1.7e-57FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_8fbde072fd66c5d39ad533a0353e3afdp9@Nkx2-1
1.7e-57FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_8fbde072fd66c5d39ad533a0353e3afdp9@Nkx2-1
1.79e-56FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_e50b6609bfa39d8efd57ebb8bade61f3p3@E030019B13Rik
1.79e-56FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_e50b6609bfa39d8efd57ebb8bade61f3p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_e50b6609bfa39d8efd57ebb8bade61f3p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_e50b6609bfa39d8efd57ebb8bade61f3p3@Trpm6
1.79e-56FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_e50b6609bfa39d8efd57ebb8bade61f3p3@Trpm6
1.79e-56FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_e50b6609bfa39d8efd57ebb8bade61f3p3@E030019B13Rik
2.01e-56FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_b059de7f354677ffca07a8718b808ec0p@chr14:115241755..115241762, -
2.01e-56FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_b059de7f354677ffca07a8718b808ec0p@chr12:57636278..57636289, +
2.01e-56FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_b059de7f354677ffca07a8718b808ec0p@chr14:115241755..115241762, -
2.01e-56FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_b059de7f354677ffca07a8718b808ec0p@chr12:57636278..57636289, +
2.24e-56FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_2565e48f1f8091d459b7722b61726cf5p@chr4:138812999..138813015, +
2.24e-56FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_2565e48f1f8091d459b7722b61726cf5p@chr4:138812999..138813015, +
3.93e-56FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_11be555a46ff1b41e465a22bba766629p7@Il18r1
3.93e-56FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_11be555a46ff1b41e465a22bba766629p7@Il18r1
6.2e-56FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr2:66524237..66524246, -
6.2e-56FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr2:66524237..66524246, -
6.2e-56FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr2:164374820..164374835, -
6.2e-56FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_880b4d1ad3de83b353a2b3e043037d1fp3@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr14:70922576..70922589, -
6.2e-56FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_880b4d1ad3de83b353a2b3e043037d1fp4@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr14:70921265..70921285, -
6.2e-56FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr14:70922576..70922589, -
6.2e-56FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_880b4d1ad3de83b353a2b3e043037d1fp@chr1:184610062..184610074, +
6.2e-56FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr2:164374820..164374835, -
6.2e-56FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_880b4d1ad3de83b353a2b3e043037d1fp@chr1:184610062..184610074, +
6.2e-56FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_880b4d1ad3de83b353a2b3e043037d1fp3@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_880b4d1ad3de83b353a2b3e043037d1fp@chr14:70921265..70921285, -
6.2e-56FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_880b4d1ad3de83b353a2b3e043037d1fp4@Sftpb
9.42e-56FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_c13a3f3c9e324ab1183065989a184a77p@chr5:120282691..120282701, +
9.42e-56FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_c13a3f3c9e324ab1183065989a184a77p@chr5:120282691..120282701, +
1.34e-54FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_d6b8d784ee19621de03bd313ca498ce2p@chr12:57636911..57636924, -
1.34e-54FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_d6b8d784ee19621de03bd313ca498ce2p@chr12:57636911..57636924, -
3.97e-54FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_b0d33f312feddd5288ef2399ef6dd030p4@E030019B13Rik
3.97e-54FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_b0d33f312feddd5288ef2399ef6dd030p4@E030019B13Rik
1.46e-52FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_5335d5c5b6235620d2940868e4df70edp@chr14:70922007..70922052, +
1.46e-52FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_5335d5c5b6235620d2940868e4df70edp@chr12:57623172..57623185, -
1.46e-52FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_5335d5c5b6235620d2940868e4df70edp@chr12:57623172..57623185, -
1.46e-52FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_5335d5c5b6235620d2940868e4df70edp@chr14:70922007..70922052, +
1.62e-52FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_c70dff63f6b914e65754b39fd0815b44p@chr5:28785436..28785450, -
1.62e-52FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_c70dff63f6b914e65754b39fd0815b44p@chr5:28785436..28785450, -
1.8e-52FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_b3312ade6c09e43d3733c8fd50857b86p@chr14:70922459..70922482, -
1.8e-52FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_b3312ade6c09e43d3733c8fd50857b86p@chr14:70922459..70922482, -
5.65e-52FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_0b47e59ca7c0555c7d998a43281b8956p4@Etv5
5.65e-52FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_0b47e59ca7c0555c7d998a43281b8956p4@Etv5
1.97e-51FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_dd3578b29adec1e2263e37e4b8c22f50p@chr14:70923240..70923251, -
1.97e-51FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72263977..72263993, +
1.97e-51FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_dd3578b29adec1e2263e37e4b8c22f50p@chr12:57376690..57376716, -
1.97e-51FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_dd3578b29adec1e2263e37e4b8c22f50p@chr14:70922486..70922510, -
1.97e-51FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72259797..72259814, +
1.97e-51FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_dd3578b29adec1e2263e37e4b8c22f50p@chr12:57376690..57376716, -
1.97e-51FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72264418..72264441, +
1.97e-51FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_dd3578b29adec1e2263e37e4b8c22f50p4@Lamp3
1.97e-51FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72264418..72264441, +
1.97e-51FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_dd3578b29adec1e2263e37e4b8c22f50p4@Lamp3
1.97e-51FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72259797..72259814, +
1.97e-51FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_dd3578b29adec1e2263e37e4b8c22f50p@chr14:70923240..70923251, -
1.97e-51FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72263977..72263993, +
1.97e-51FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72264890..72264911, +
1.97e-51FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_dd3578b29adec1e2263e37e4b8c22f50p@chr14:70922486..70922510, -
1.97e-51FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_dd3578b29adec1e2263e37e4b8c22f50p@chr6:72264890..72264911, +
2.21e-51FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_2e1f7317689899bdbc6ea15589309031p@chr6:72264609..72264653, -
2.21e-51FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_2e1f7317689899bdbc6ea15589309031p@chr6:72264609..72264653, -
2.47e-51FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_48ee725e0e8067c089139c02ce39a8fbp@chr6:129378567..129378573, -
2.47e-51FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_48ee725e0e8067c089139c02ce39a8fbp@chr6:129378567..129378573, -
3.74e-51FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_c5d77647e6c4f396001370a06a0d059cp16@Pde5a
3.74e-51FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_c5d77647e6c4f396001370a06a0d059cp16@Pde5a
5.44e-51FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_afd23d8464671da5a885843e01d43ce6p7@Nkx2-1
5.44e-51FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_afd23d8464671da5a885843e01d43ce6p7@Nkx2-1

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