UBERON:0004535: Difference between revisions
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def="Anatomical system that has as its parts the heart and blood vessels." [BTO:0000088] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0004535 | |||
|is_a=UBERON:0000467 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=cardiovascular system | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0001009 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset=uberon_slim;;vertebrate_core | ||
| | |synonym="CV system" RELATED [BTO:0000088];;"Herz und Gefaesssystem" RELATED [BTO:0000088] | ||
|union_of= | |||
|xref=AAO:0011001;;BILA:0000016;;BTO:0000088;;EFO:0000791;;EHDAA2:0000216;;EHDAA:394;;EMAPA:16104;;EMAPA:16370;;EV:0100017;;FMA:7161;;GAID:467;;MA:0000010;;MAT:0000016;;MESH:A.07;;MIAA:0000016;;ncithesaurus:Cardiovascular_System;;OpenCyc:Mx4rvVjzG5wpEbGdrcN5Y29ycA;;SCTID:278198007;;TAO:0000010;;VHOG:0000302;;XAO:0000100;;XAO:0001010;;ZFA:0000010 | |||
}} | }} | ||
Latest revision as of 17:46, 12 September 2014
| Name: | cardiovascular system | |
|---|---|---|
| Namespace: | FANTOM | |
| Definition: | "Anatomical system that has as its parts the heart and blood vessels." [BTO:0000088] | |
| Xrefs: |
| |
| Synonyms: |
"CV system" RELATED [BTO:0000088] "Herz und Gefaesssystem" RELATED [BTO:0000088] | |
| Subset: |
uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000467(anatomical system) |
|---|---|
| part_of: | UBERON:0001009(circulatory system) |
Children
| is a: | UBERON:0011695 (embryonic cardiovascular system) |
|---|---|
| part of: | UBERON:0000178 (blood),UBERON:0003084 (heart primordium),UBERON:0004537 (blood vasculature),UBERON:0004572 (arterial system),UBERON:0004852 (cardiovascular system endothelium),UBERON:0007798 (vascular system),UBERON:0008886 (pulmonary vascular system),UBERON:0015410 (heart plus pericardium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10046-101G1 (heart, fetal, pool1)
- 10052-101G7 (aorta, adult, pool1)
- 10053-101G8 (blood, adult, pool1)
- 10078-102A6 (left ventricle, adult, donor1)
- 10079-102A7 (left atrium, adult, donor1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10205-103F7 (heart - mitral valve, adult)
- 10206-103F8 (heart - pulmonic valve, adult)
- 10207-103F9 (heart - tricuspid valve, adult)
... further results Mouse (Mus musculus)
- 10046-101G1 (heart, fetal, pool1)
- 10052-101G7 (aorta, adult, pool1)
- 10053-101G8 (blood, adult, pool1)
- 10078-102A6 (left ventricle, adult, donor1)
- 10079-102A7 (left atrium, adult, donor1)
- 10190-103E1 (artery, adult)
- 10191-103E2 (vein, adult)
- 10205-103F7 (heart - mitral valve, adult)
- 10206-103F8 (heart - pulmonic valve, adult)
- 10207-103F9 (heart - tricuspid valve, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004535 (cardiovascular system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
