UBERON:0004535: Difference between revisions

Latest revision as of 17:46, 12 September 2014

Name:

cardiovascular system

Namespace:

FANTOM

Definition:

"Anatomical system that has as its parts the heart and blood vessels." [BTO:0000088]

Xrefs:

Expandlinks:

Synonyms:

"CV system" RELATED [BTO:0000088]
"Herz und Gefaesssystem" RELATED [BTO:0000088]

Subset:

uberon_slim
vertebrate_core

Ontology association Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies. link to ontology dataset data

Parents

is_a:	UBERON:0000467(anatomical system)
part_of:	UBERON:0001009(circulatory system)

Children

is a:	UBERON:0011695 (embryonic cardiovascular system)
part of:	UBERON:0000178 (blood),UBERON:0003084 (heart primordium),UBERON:0004537 (blood vasculature),UBERON:0004572 (arterial system),UBERON:0004852 (cardiovascular system endothelium),UBERON:0007798 (vascular system),UBERON:0008886 (pulmonary vascular system),UBERON:0015410 (heart plus pericardium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

10046-101G1 (heart, fetal, pool1)
10052-101G7 (aorta, adult, pool1)
10053-101G8 (blood, adult, pool1)
10078-102A6 (left ventricle, adult, donor1)
10079-102A7 (left atrium, adult, donor1)
10190-103E1 (artery, adult)
10191-103E2 (vein, adult)
10205-103F7 (heart - mitral valve, adult)
10206-103F8 (heart - pulmonic valve, adult)
10207-103F9 (heart - tricuspid valve, adult)

... further results Mouse (Mus musculus)

10046-101G1 (heart, fetal, pool1)
10052-101G7 (aorta, adult, pool1)
10053-101G8 (blood, adult, pool1)
10078-102A6 (left ventricle, adult, donor1)
10079-102A7 (left atrium, adult, donor1)
10190-103E1 (artery, adult)
10191-103E2 (vein, adult)
10205-103F7 (heart - mitral valve, adult)
10206-103F8 (heart - pulmonic valve, adult)
10207-103F9 (heart - tricuspid valve, adult)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004535 (cardiovascular system), sorted by p-values Analyst: Hideya Kawaji link to source dataset human : data mouse : data

Search:

P-value	FFCP	Short description
6.2e-82	FFCP PHASE1:Hg19::chr8:55370720..55370733,+	p2@SOX17
6.2e-82	FFCP PHASE2:Hg19::chr8:55370720..55370733,+	p2@SOX17
7.97e-71	FFCP PHASE2:Hg19::chr12:96830430..96830450,+	p@chr12:96830430..96830450, +
7.97e-71	FFCP PHASE1:Hg19::chr12:96830430..96830450,+	p@chr12:96830430..96830450, +
1.13e-70	FFCP PHASE2:Hg19::chr11:128562673..128562716,-	p@chr11:128562673..128562716, -
1.13e-70	FFCP PHASE1:Hg19::chr11:128562673..128562716,-	p@chr11:128562673..128562716, -
2.4e-67	FFCP PHASE1:Mm9::chr19:36187511..36187515,-	p@chr19:36187511..36187515, -
2.4e-67	FFCP PHASE2:Mm9::chr19:36187511..36187515,-	p@chr19:36187511..36187515, -
1.46e-63	FFCP PHASE1:Mm9::chr9:24549775..24549776,-	p@chr9:24549775..24549776, -
1.46e-63	FFCP PHASE1:Mm9::chr4:147375434..147375447,+	p@chr4:147375434..147375447, +
1.46e-63	FFCP PHASE1:Mm9::chr4:151692832..151692868,+	p@chr4:151692832..151692868, +
1.46e-63	FFCP PHASE2:Mm9::chr9:24549775..24549776,-	p@chr9:24549775..24549776, -
1.46e-63	FFCP PHASE2:Mm9::chr1:137747392..137747402,-	p@chr1:137747392..137747402, -
1.46e-63	FFCP PHASE2:Mm9::chr4:151692832..151692868,+	p@chr4:151692832..151692868, +
1.46e-63	FFCP PHASE2:Mm9::chr4:147375434..147375447,+	p@chr4:147375434..147375447, +
1.46e-63	FFCP PHASE1:Mm9::chr1:137747392..137747402,-	p@chr1:137747392..137747402, -
7.0e-61	FFCP PHASE2:Mm9::chr4:140980456..140980463,+	p@chr4:140980456..140980463, +
7.0e-61	FFCP PHASE1:Mm9::chr4:140980456..140980463,+	p@chr4:140980456..140980463, +
7.27e-61	FFCP PHASE1:Hg19::chr15:39542867..39542890,+	p1@C15orf54
7.27e-61	FFCP PHASE2:Hg19::chr15:39542867..39542890,+	p1@C15orf54
1.56e-60	FFCP PHASE1:Hg19::chr3:30334038..30334060,+	p@chr3:30334038..30334060, +
1.56e-60	FFCP PHASE2:Hg19::chr3:30334038..30334060,+	p@chr3:30334038..30334060, +
3.45e-60	FFCP PHASE1:Mm9::chr12:113728951..113728965,+	p@chr12:113728951..113728965, +
3.45e-60	FFCP PHASE2:Mm9::chr12:113728951..113728965,+	p@chr12:113728951..113728965, +
3.45e-60	FFCP PHASE2:Mm9::chr1:137737483..137737497,-	p@chr1:137737483..137737497, -
3.45e-60	FFCP PHASE1:Mm9::chr1:137737483..137737497,-	p@chr1:137737483..137737497, -
3.77e-60	FFCP PHASE2:Mm9::chr4:147375200..147375220,+	p@chr4:147375200..147375220, +
3.77e-60	FFCP PHASE1:Mm9::chr4:147375200..147375220,+	p@chr4:147375200..147375220, +
8.52e-60	FFCP PHASE2:Mm9::chr1:137744668..137744681,-	p@chr1:137744668..137744681, -
8.52e-60	FFCP PHASE1:Mm9::chr14:55568737..55568746,-	p@chr14:55568737..55568746, -
8.52e-60	FFCP PHASE1:Mm9::chr1:137744550..137744565,+	p@chr1:137744550..137744565, +
8.52e-60	FFCP PHASE2:Mm9::chr14:55563577..55563611,-	p@chr14:55563577..55563611, -
8.52e-60	FFCP PHASE2:Mm9::chr15:88850827..88850850,+	p2@Mov10l1
8.52e-60	FFCP PHASE1:Mm9::chr11:65461897..65461929,-	p@chr11:65461897..65461929, -
8.52e-60	FFCP PHASE1:Mm9::chr14:55565785..55565833,-	p@chr14:55565785..55565833, -
8.52e-60	FFCP PHASE2:Mm9::chr14:55579265..55579297,-	p@chr14:55579265..55579297, -
8.52e-60	FFCP PHASE1:Mm9::chr14:55581579..55581620,-	p@chr14:55581579..55581620, -
8.52e-60	FFCP PHASE1:Mm9::chr14:55584663..55584731,-	p@chr14:55584663..55584731, -
8.52e-60	FFCP PHASE2:Mm9::chr4:147375901..147375913,+	p@chr4:147375901..147375913, +
8.52e-60	FFCP PHASE1:Mm9::chr14:55563577..55563611,-	p@chr14:55563577..55563611, -
8.52e-60	FFCP PHASE1:Mm9::chr19:36193772..36193793,-	p@chr19:36193772..36193793, -
8.52e-60	FFCP PHASE1:Mm9::chr15:88850827..88850850,+	p2@Mov10l1
8.52e-60	FFCP PHASE1:Mm9::chr5:120286706..120286736,+	p@chr5:120286706..120286736, +
8.52e-60	FFCP PHASE1:Mm9::chr14:55586837..55586880,-	p@chr14:55586837..55586880, -
8.52e-60	FFCP PHASE1:Mm9::chr1:137744636..137744654,+	p@chr1:137744636..137744654, +
8.52e-60	FFCP PHASE2:Mm9::chr14:55584272..55584298,-	p@chr14:55584272..55584298, -
8.52e-60	FFCP PHASE1:Mm9::chrX:56432790..56432814,+	p@chrX:56432790..56432814, +
8.52e-60	FFCP PHASE2:Mm9::chr1:137744333..137744352,-	p@chr1:137744333..137744352, -
8.52e-60	FFCP PHASE2:Mm9::chr1:137743272..137743307,+	p@chr1:137743272..137743307, +
8.52e-60	FFCP PHASE2:Mm9::chrX:56432790..56432814,+	p@chrX:56432790..56432814, +
8.52e-60	FFCP PHASE1:Mm9::chr1:137744611..137744621,+	p@chr1:137744611..137744621, +
8.52e-60	FFCP PHASE1:Mm9::chr1:137744333..137744352,-	p@chr1:137744333..137744352, -
8.52e-60	FFCP PHASE2:Mm9::chr14:55572120..55572173,+	p@chr14:55572120..55572173, +
8.52e-60	FFCP PHASE1:Mm9::chr1:137745434..137745445,+	p@chr1:137745434..137745445, +
8.52e-60	FFCP PHASE1:Mm9::chr14:55568937..55568988,-	p@chr14:55568937..55568988, -
8.52e-60	FFCP PHASE1:Mm9::chr1:137743272..137743307,+	p@chr1:137743272..137743307, +
8.52e-60	FFCP PHASE1:Mm9::chr14:55579265..55579297,-	p@chr14:55579265..55579297, -
8.52e-60	FFCP PHASE2:Mm9::chr14:55581579..55581620,-	p@chr14:55581579..55581620, -
8.52e-60	FFCP PHASE1:Mm9::chr4:147375901..147375913,+	p@chr4:147375901..147375913, +
8.52e-60	FFCP PHASE1:Mm9::chr1:137744668..137744681,-	p@chr1:137744668..137744681, -
8.52e-60	FFCP PHASE1:Mm9::chr14:55572120..55572173,+	p@chr14:55572120..55572173, +
8.52e-60	FFCP PHASE1:Mm9::chr14:55568790..55568803,-	p@chr14:55568790..55568803, -
8.52e-60	FFCP PHASE2:Mm9::chr5:120286706..120286736,+	p@chr5:120286706..120286736, +
8.52e-60	FFCP PHASE1:Mm9::chr14:55584197..55584239,-	p@chr14:55584197..55584239, -
8.52e-60	FFCP PHASE2:Mm9::chr11:58815923..58815951,-	p@chr11:58815923..58815951, -
8.52e-60	FFCP PHASE2:Mm9::chr14:55584197..55584239,-	p@chr14:55584197..55584239, -
8.52e-60	FFCP PHASE2:Mm9::chr14:55568790..55568803,-	p@chr14:55568790..55568803, -
8.52e-60	FFCP PHASE2:Mm9::chr14:55584663..55584731,-	p@chr14:55584663..55584731, -
8.52e-60	FFCP PHASE2:Mm9::chr14:55568737..55568746,-	p@chr14:55568737..55568746, -
8.52e-60	FFCP PHASE2:Mm9::chr14:55568937..55568988,-	p@chr14:55568937..55568988, -
8.52e-60	FFCP PHASE1:Mm9::chr1:137747289..137747313,+	p@chr1:137747289..137747313, +
8.52e-60	FFCP PHASE2:Mm9::chr1:137744550..137744565,+	p@chr1:137744550..137744565, +
8.52e-60	FFCP PHASE1:Mm9::chr14:55584272..55584298,-	p@chr14:55584272..55584298, -
8.52e-60	FFCP PHASE1:Mm9::chr1:137747382..137747385,-	p@chr1:137747382..137747385, -
8.52e-60	FFCP PHASE1:Mm9::chr1:137747953..137747967,-	p@chr1:137747953..137747967, -
8.52e-60	FFCP PHASE2:Mm9::chr19:36193772..36193793,-	p@chr19:36193772..36193793, -
8.52e-60	FFCP PHASE2:Mm9::chr1:137747289..137747313,+	p@chr1:137747289..137747313, +
8.52e-60	FFCP PHASE2:Mm9::chr14:55586837..55586880,-	p@chr14:55586837..55586880, -
8.52e-60	FFCP PHASE1:Mm9::chr11:58815923..58815951,-	p@chr11:58815923..58815951, -
8.52e-60	FFCP PHASE2:Mm9::chr14:55571909..55571953,-	p@chr14:55571909..55571953, -
8.52e-60	FFCP PHASE2:Mm9::chr11:65461897..65461929,-	p@chr11:65461897..65461929, -
8.52e-60	FFCP PHASE2:Mm9::chr1:137745434..137745445,+	p@chr1:137745434..137745445, +
8.52e-60	FFCP PHASE2:Mm9::chr1:137744636..137744654,+	p@chr1:137744636..137744654, +
8.52e-60	FFCP PHASE2:Mm9::chr14:55565785..55565833,-	p@chr14:55565785..55565833, -
8.52e-60	FFCP PHASE2:Mm9::chr1:137747382..137747385,-	p@chr1:137747382..137747385, -
8.52e-60	FFCP PHASE1:Mm9::chr14:55571909..55571953,-	p@chr14:55571909..55571953, -
8.52e-60	FFCP PHASE2:Mm9::chr1:137747953..137747967,-	p@chr1:137747953..137747967, -
8.52e-60	FFCP PHASE2:Mm9::chr1:137744611..137744621,+	p@chr1:137744611..137744621, +
3.61e-57	FFCP PHASE2:Mm9::chr1:137742152..137742184,-	p@chr1:137742152..137742184, -
3.61e-57	FFCP PHASE1:Mm9::chr1:137742152..137742184,-	p@chr1:137742152..137742184, -
2.05e-56	FFCP PHASE2:Mm9::chr1:137742470..137742481,+	p@chr1:137742470..137742481, +
2.05e-56	FFCP PHASE1:Mm9::chr7:4473478..4473505,-	p2@Tnni3
2.05e-56	FFCP PHASE2:Mm9::chr16:5431481..5431510,+	p@chr16:5431481..5431510, +
2.05e-56	FFCP PHASE2:Mm9::chr14:55577329..55577367,-	p@chr14:55577329..55577367, -
2.05e-56	FFCP PHASE1:Mm9::chr14:55577329..55577367,-	p@chr14:55577329..55577367, -
2.05e-56	FFCP PHASE1:Mm9::chr16:5431481..5431510,+	p@chr16:5431481..5431510, +
2.05e-56	FFCP PHASE2:Mm9::chr7:4473478..4473505,-	p2@Tnni3
2.05e-56	FFCP PHASE1:Mm9::chr1:137742470..137742481,+	p@chr1:137742470..137742481, +
2.23e-56	FFCP PHASE2:Mm9::chr10:53062244..53062249,+	p@chr10:53062244..53062249, +
2.23e-56	FFCP PHASE2:Mm9::chr2:17382210..17382221,-	p5@Nebl

Showing 1 to 100 of 100 entries

@@ Line 13: / Line 13: @@
 |located_in=
 |name=cardiovascular system
-|namespace=
+|namespace=FANTOM
 |obo_creation_date=
 |part_of=UBERON:0001009

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UBERON:0004535: Difference between revisions

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Latest revision as of 17:46, 12 September 2014

Ontology Tree: Loaded from BioPortal

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