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{{UBERON
{{UBERON
|id=UBERON:0004765
|alt_id=
|name=skeletal element
|namespace=
|def="Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm]
|xref=galen:SkeletalStructure;;TAO:0001890;;VAO:0000128;;XAO:0004012;;ZFA:0005494
|is_a=UBERON:0000062;;UBERON:0004120
|synonym=
|comment=TODO - add more general class for other kinds of mineralized tissue
|comment=TODO - add more general class for other kinds of mineralized tissue
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm]
|subset=organ_slim;;uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0004765
|is_a=UBERON:0000062
|is_obsolete=
|located_in=
|located_in=
|name=skeletal element
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0001434
|part_of=UBERON:0001434
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO]" xsd:string;;UBPROP:0000001 "Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO]" xsd:string
|subset=organ_slim;;uberon_slim
|synonym=
|union_of=
|xref=AAO:0011129;;galen:SkeletalStructure;;TAO:0001890;;VSAO:0000128;;XAO:0004012;;ZFA:0005494
}}
}}

Latest revision as of 17:47, 12 September 2014

Name:skeletal element
Namespace:FANTOM
Definition:"Organ consisting of skeletal tissue. Encompasses whole bones, fused bones, cartilaginious elements, teeth, dermal denticles." [UBERON:cjm]
Xrefs:
links:

AAO:0011129
galen:SkeletalStructure
TAO:0001890
VSAO:0000128
XAO:0004012

ZFA:0005494
Comments:TODO - add more general class for other kinds of mineralized tissue
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000062(organ)
part_of:UBERON:0001434(skeletal system)



Children

is a:UBERON:0001474 (bone element),UBERON:0004339 (calvarium),UBERON:0004637 (otic capsule),UBERON:0004756 (dermal skeletal element),UBERON:0007844 (cartilage element),UBERON:0010363 (endochondral element),UBERON:0010913 (vertebral element)
part of:UBERON:0004755 (skeletal tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004765 (skeletal element), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data











Property "Property value" (as page type) with input value "UBPROP:0000001 "Organ entity that is typically involved in mechanical support and may have different skeletal tissue compositions at different stages.[VSAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "Organ entity that may have different tissue compositions at different stages and is typically involved in mechanical support.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.