UBERON:0004907: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=lower digestive tract | |name=lower digestive tract | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0005409 | |part_of=UBERON:0005409 | ||
Latest revision as of 17:49, 12 September 2014
| Name: | lower digestive tract | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "the region of the digestive tract extending from the beginning of the intestines to the anus[GO - gut definition]." [Wikipedia:Alimentary_canal#Upper_gastrointestinal_tract] | ||
| Xrefs: |
| ||
| Synonyms: |
"gut" BROAD [GO:0048565] "lower gastrointestinal tract" EXACT [] "lower GI tract" EXACT [] | ||
| Comments: | WP: small intestine, large intestine, anus. Anal canal not part of LGIT according to FMA, but anus is considered part of LGIT according to WP. Duodenum overlaps both U/L | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004921(subdivision of digestive tract) |
|---|---|
| develops_from: | UBERON:0001046(hindgut) |
| part_of: | UBERON:0005409(gastrointestinal system) |
Children
| part of: | UBERON:0000059 (large intestine),UBERON:0001154 (vermiform appendix) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10067-101I4 (rectum, fetal, donor1)
- 10189-103D9 (appendix, adult)
- 10208-103G1
- 10420-106C6 (colon carcinoma cell line:COLO-320)
- 10469-106I1 (rectal cancer cell line:TT1TKB)
- 10513-107D9 (colon carcinoma cell line:CACO-2)
- 10523-107F1
- 10557-107I8
- 10654-109B6
- 10657-109B9
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004907 (lower digestive tract), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.49e-79 | FFCP PHASE2:Hg19::chr18:28860939..28860953,-#_0c8d68a55e30dd8b8b0cbc4c297dd505 | p@chr18:28860939..28860953, - |
| 3.49e-79 | FFCP PHASE1:Hg19::chr18:28860939..28860953,-#_0c8d68a55e30dd8b8b0cbc4c297dd505 | p@chr18:28860939..28860953, - |
| 2.87e-53 | FFCP PHASE1:Hg19::chr15:45950466..45950474,+#_803cfd61842f71265bd7f5ed839a7964 | p@chr15:45950466..45950474, + |
| 2.87e-53 | FFCP PHASE2:Hg19::chr15:45950466..45950474,+#_803cfd61842f71265bd7f5ed839a7964 | p@chr15:45950466..45950474, + |
| 3.74e-53 | FFCP PHASE1:Hg19::chr6:150777673..150777685,-#_0f13cdc682307d9e483d801271b6a47b | p@chr6:150777673..150777685, - |
| 3.74e-53 | FFCP PHASE2:Hg19::chr6:150777673..150777685,-#_0f13cdc682307d9e483d801271b6a47b | p@chr6:150777673..150777685, - |
| 1.31e-45 | FFCP PHASE2:Hg19::chr13:28543388..28543406,-#_0182cff9208c0bbed81eb0607a88153c | p3@CDX2 |
| 1.31e-45 | FFCP PHASE1:Hg19::chr13:28543388..28543406,-#_0182cff9208c0bbed81eb0607a88153c | p3@CDX2 |
| 9.22e-44 | FFCP PHASE2:Hg19::chr13:28543253..28543276,-#_5c6afbab3a68d7b561dcf0f2a9105400 | p5@CDX2 |
| 9.22e-44 | FFCP PHASE1:Hg19::chr13:28543253..28543276,-#_5c6afbab3a68d7b561dcf0f2a9105400 | p5@CDX2 |
| 1.32e-42 | FFCP PHASE2:Hg19::chr13:28543409..28543420,-#_7c976183e6fd47119203336c07823e42 | p8@CDX2 |
| 1.32e-42 | FFCP PHASE1:Hg19::chr13:28543409..28543420,-#_7c976183e6fd47119203336c07823e42 | p8@CDX2 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr12:31632597..31632607,-#_75bb4d3d88c960d8349cd366f05fbccd | p13@DENND5B |
| 1.48e-40 | FFCP PHASE1:Hg19::chr2:127711416..127711419,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:127711416..127711419, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:87232406..87232409,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:87232406..87232409, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:91774965..91774974,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr6:91774965..91774974, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:141499716..141499722,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:141499716..141499722, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr12:77730114..77730120,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr12:77730114..77730120, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr6:8389087..8389116,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr6:8389087..8389116, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:156822661..156822696,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr3:156822661..156822696, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr3:148165064..148165071,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr3:148165064..148165071, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:12134371..12134377,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:12134371..12134377, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:24797750..24797759,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr3:24797750..24797759, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr2:66794389..66794398,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:66794389..66794398, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr12:77730114..77730120,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr12:77730114..77730120, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr8:127445866..127445873,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:127445866..127445873, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:110258158..110258170,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:110258158..110258170, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:372660..372670,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr6:372660..372670, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:46093198..46093203,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:46093198..46093203, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:118658073..118658082,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr1:118658073..118658082, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr2:19707156..19707203,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:19707156..19707203, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr13:46093198..46093203,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:46093198..46093203, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr15:60749901..60749904,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr15:60749901..60749904, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr8:128415915..128415922,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128415915..128415922, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr13:110258158..110258170,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:110258158..110258170, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr2:127711416..127711419,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:127711416..127711419, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr15:45950558..45950561,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr15:45950558..45950561, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr9:98505341..98505348,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr9:98505341..98505348, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr4:157174062..157174071,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr4:157174062..157174071, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:87232419..87232430,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:87232419..87232430, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:55404829..55404833,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr1:55404829..55404833, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:8389087..8389116,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr6:8389087..8389116, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr3:156822661..156822696,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr3:156822661..156822696, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr8:127817393..127817400,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:127817393..127817400, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr3:24797750..24797759,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr3:24797750..24797759, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr2:19707156..19707203,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:19707156..19707203, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr8:127449395..127449424,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:127449395..127449424, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr2:148148505..148148515,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:148148505..148148515, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:104610923..104610939,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr9:104610923..104610939, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:19522690..19522704,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr1:19522690..19522704, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr18:39550015..39550034,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr18:39550015..39550034, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr16:53671764..53671771,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr16:53671764..53671771, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr9:98505341..98505348,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr9:98505341..98505348, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr4:157174062..157174071,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr4:157174062..157174071, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr4:71222797..71222807,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr4:71222797..71222807, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr16:53671764..53671771,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr16:53671764..53671771, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr8:128418828..128418839,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128418828..128418839, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr21:37143915..37143924,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr21:37143915..37143924, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr8:128415915..128415922,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128415915..128415922, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:97958802..97958804,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:97958802..97958804, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr15:45950558..45950561,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr15:45950558..45950561, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chrX:42162203..42162241,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chrX:42162203..42162241, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr2:127711472..127711475,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:127711472..127711475, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr10:24726466..24726472,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr10:24726466..24726472, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:87232419..87232430,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:87232419..87232430, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr8:128118744..128118753,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128118744..128118753, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr18:53252911..53252918,-#_75bb4d3d88c960d8349cd366f05fbccd | p106@TCF4 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr6:31683061..31683070,+#_75bb4d3d88c960d8349cd366f05fbccd | p5@LY6G6D |
| 1.48e-40 | FFCP PHASE2:Hg19::chr8:127817393..127817400,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:127817393..127817400, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr6:8389389..8389429,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr6:8389389..8389429, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr1:19522690..19522704,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr1:19522690..19522704, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:28541425..28541439,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:28541425..28541439, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr8:127568784..127568794,+#_75bb4d3d88c960d8349cd366f05fbccd | p6@ENST00000524320 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:12134400..12134410,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:12134400..12134410, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:24797832..24797838,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr3:24797832..24797838, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr8:127449395..127449424,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:127449395..127449424, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr3:140054665..140054678,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr3:140054665..140054678, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:141499716..141499722,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:141499716..141499722, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr2:148148505..148148515,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:148148505..148148515, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr8:128418828..128418839,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128418828..128418839, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr12:65277574..65277589,+#_75bb4d3d88c960d8349cd366f05fbccd | p2@FLJ41278 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr13:28541425..28541439,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:28541425..28541439, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:12134371..12134377,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:12134371..12134377, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr2:66794389..66794398,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:66794389..66794398, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr10:24726466..24726472,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr10:24726466..24726472, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr4:157174075..157174084,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr4:157174075..157174084, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:31683061..31683070,+#_75bb4d3d88c960d8349cd366f05fbccd | p5@LY6G6D |
| 1.48e-40 | FFCP PHASE1:Hg19::chr12:65277574..65277589,+#_75bb4d3d88c960d8349cd366f05fbccd | p2@FLJ41278 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr13:32790605..32790619,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr13:32790605..32790619, + |
| 1.48e-40 | FFCP PHASE1:Hg19::chr1:93128331..93128338,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr1:93128331..93128338, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr14:26793415..26793426,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr14:26793415..26793426, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr7:97958802..97958804,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:97958802..97958804, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr8:128415944..128415958,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128415944..128415958, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chrX:42162203..42162241,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chrX:42162203..42162241, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr2:127711472..127711475,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr2:127711472..127711475, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr8:128118744..128118753,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr8:128118744..128118753, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr7:87232440..87232448,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr7:87232440..87232448, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr5:97747048..97747059,+#_75bb4d3d88c960d8349cd366f05fbccd | p@chr5:97747048..97747059, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr6:8389389..8389429,-#_75bb4d3d88c960d8349cd366f05fbccd | p@chr6:8389389..8389429, - |
| 1.48e-40 | FFCP PHASE2:Hg19::chr8:127568784..127568794,+#_75bb4d3d88c960d8349cd366f05fbccd | p6@ENST00000524320 |
