Personal tools

UBERON:0005620: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0005620
|alt_id=
|name=primary palate
|namespace=
|def="Roof of the buccal cavity, formed from the fusion of vomer, pterygoid, parasphenoid, palatine, ectopterygoid." [ISBN10:0073040584, Wikipedia:Primitive_palate]
|xref=EHDAA2:0001499;;EMAPA:17642;;EMAPA:17934;;MA:0001583;;ncithesaurus:Primary_Palate;;SCTID:359541001;;VHOG:0000362;;ZFA:0005509
|is_a=UBERON:0004120;;UBERON:0007375
|synonym="primary palate" RELATED [Wikipedia:Primitive_palate];;"primary palate process" EXACT [EHDAA2:0001499]
|comment=
|comment=
|alt_id=
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Roof of the buccal cavity, formed from the fusion of vomer, pterygoid, parasphenoid, palatine, ectopterygoid." [ISBN10:0073040584, Wikipedia:Primitive_palate]
|subset=vertebrate_core
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0007238;;UBERON:0009714
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0005620
|is_a=UBERON:0000078 ;;UBERON:0007375 ;;UBERON:0010313
|is_obsolete=
|located_in=
|located_in=
|name=primary palate
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0002244
|part_of=UBERON:0002244
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Anatomical cluster that is the upper roof of the mouth that is underlain by bones such as the parasphenoid, vomer, metapterygoid, orbitosphenoid.[TAO]" xsd:string
|subset=vertebrate_core
|synonym="primary palate" RELATED [Wikipedia:Primitive_palate];;"primary palate process" EXACT [EHDAA2:0001499]
|union_of=
|xref=EHDAA2:0001499;;EMAPA:17642;;EMAPA:17934;;MA:0001583;;ncithesaurus:Primary_Palate;;SCTID:359541001;;TAO:0002093;;VHOG:0000362;;ZFA:0005509
}}
}}

Latest revision as of 17:54, 12 September 2014

Name:primary palate
Namespace:FANTOM
Definition:"Roof of the buccal cavity, formed from the fusion of vomer, pterygoid, parasphenoid, palatine, ectopterygoid." [ISBN10:0073040584, Wikipedia:Primitive_palate]
Xrefs:
links:

EHDAA2:0001499
EMAPA:17642
EMAPA:17934
MA:0001583
ncithesaurus:Primary_Palate
SCTID:359541001
TAO:0002093
VHOG:0000362

ZFA:0005509
Synonyms: "primary palate" RELATED [Wikipedia:Primitive_palate]
"primary palate process" EXACT [EHDAA2:0001499]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000078(mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0007375(roof of mouth),UBERON:0010313(neural crest-derived structure)
develops_from:UBERON:0007238(1st arch maxillary component),UBERON:0009714(intermaxillary process)
part_of:UBERON:0002244(premaxilla)



Children

part of:UBERON:0005705 (primary palate mesenchyme)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10813-111B3 (normal embryonic palatal mesenchymal cell line:HEPM)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005620 (primary palate), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_75811648e46e21223dc561181ad0ab99p14@C17orf67
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_75811648e46e21223dc561181ad0ab99p14@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_1499ac71a12b8b15c6d878b1381ffd4ep11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_1499ac71a12b8b15c6d878b1381ffd4ep12@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_1499ac71a12b8b15c6d878b1381ffd4ep@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_1499ac71a12b8b15c6d878b1381ffd4ep13@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_1499ac71a12b8b15c6d878b1381ffd4ep11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_1499ac71a12b8b15c6d878b1381ffd4ep13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_1499ac71a12b8b15c6d878b1381ffd4ep@chr8:57353655..57353662, -
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_1499ac71a12b8b15c6d878b1381ffd4ep12@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_b13453fa554025b3ab51f83be951012bp@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_b13453fa554025b3ab51f83be951012bp14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_b13453fa554025b3ab51f83be951012bp14@MAB21L2
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_b13453fa554025b3ab51f83be951012bp@chr5:75912402..75912418, -
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_14352c89821a5976c165f3ba2f5fa84cp@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_14352c89821a5976c165f3ba2f5fa84cp@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_63d984a27833102e8e197a55a43268a5p17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_63d984a27833102e8e197a55a43268a5p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_63d984a27833102e8e197a55a43268a5p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_63d984a27833102e8e197a55a43268a5p@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_63d984a27833102e8e197a55a43268a5p9@C17orf67
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_63d984a27833102e8e197a55a43268a5p17@RSRC1
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_0e8db9e04f5fc28990293e6086a58680p@chr8:57802672..57802682, -
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_0e8db9e04f5fc28990293e6086a58680p@chr8:57802672..57802682, -
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_ed3d8f3381d32b034ee08625e316ad44p7@ALX1
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_ed3d8f3381d32b034ee08625e316ad44p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_ed3d8f3381d32b034ee08625e316ad44p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_ed3d8f3381d32b034ee08625e316ad44p7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_ed3d8f3381d32b034ee08625e316ad44p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_ed3d8f3381d32b034ee08625e316ad44p1@AK123925
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_9a5e6ec065a304eb7505925e7641ca02p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_9a5e6ec065a304eb7505925e7641ca02p23@FLT1
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_9a5e6ec065a304eb7505925e7641ca02p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_9a5e6ec065a304eb7505925e7641ca02p23@FLT1
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_0c9ff224402d65476864ed79c72a3959p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_0c9ff224402d65476864ed79c72a3959p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_0c9ff224402d65476864ed79c72a3959p@chr8:57353666..57353675, -
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_0c9ff224402d65476864ed79c72a3959p@chr8:57353779..57353790, -
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_0c9ff224402d65476864ed79c72a3959p@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_0c9ff224402d65476864ed79c72a3959p@chr8:57353666..57353675, -
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_19ff9a232e390b384122b89a31a01a59p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_19ff9a232e390b384122b89a31a01a59p8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_19ff9a232e390b384122b89a31a01a59p2@TAS1R1
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_19ff9a232e390b384122b89a31a01a59p8@LHX8
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_19ff9a232e390b384122b89a31a01a59p12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_19ff9a232e390b384122b89a31a01a59p2@TAS1R1
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_d96d6b7dbff53e780a3acb32e0d32b37p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_d96d6b7dbff53e780a3acb32e0d32b37p@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_d96d6b7dbff53e780a3acb32e0d32b37p@chr5:75912831..75912842, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_d96d6b7dbff53e780a3acb32e0d32b37p@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_fd4f547679801ab792d366fa8056daaep@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_fd4f547679801ab792d366fa8056daaep@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_fd4f547679801ab792d366fa8056daaep@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_fd4f547679801ab792d366fa8056daaep@chr9:125165007..125165016, +
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_343b8485e22ca46d160140020a7d4df9p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_343b8485e22ca46d160140020a7d4df9p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_343b8485e22ca46d160140020a7d4df9p4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_343b8485e22ca46d160140020a7d4df9p5@PENK
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_343b8485e22ca46d160140020a7d4df9p@chr10:15760985..15760992, -
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_343b8485e22ca46d160140020a7d4df9p5@PENK
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_3a5b9e188e5bdab5fcfbaf20bba21d51p9@SIX1
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_3a5b9e188e5bdab5fcfbaf20bba21d51p9@SIX1
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_ee811dd6bdb0919de7b48168cf2ce2f4p@chr6:134327986..134327991, -
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_ee811dd6bdb0919de7b48168cf2ce2f4p@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_e628a92577b7a9805d750ead0115b024p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_e628a92577b7a9805d750ead0115b024p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_e628a92577b7a9805d750ead0115b024p@chr8:57353676..57353688, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_e628a92577b7a9805d750ead0115b024p@chr13:58291223..58291226, +
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_fcb2e9953c957bfcb1fbfde095ff9d15p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_fcb2e9953c957bfcb1fbfde095ff9d15p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_fcb2e9953c957bfcb1fbfde095ff9d15p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_fcb2e9953c957bfcb1fbfde095ff9d15p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_fcb2e9953c957bfcb1fbfde095ff9d15p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_fcb2e9953c957bfcb1fbfde095ff9d15p4@PLAC1
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_dcc267db1d6709c7d96f8775ed41fd9fp@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_dcc267db1d6709c7d96f8775ed41fd9fp@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_dcc267db1d6709c7d96f8775ed41fd9fp@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_dcc267db1d6709c7d96f8775ed41fd9fp@chr8:57353982..57353991, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_dcc267db1d6709c7d96f8775ed41fd9fp@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_dcc267db1d6709c7d96f8775ed41fd9fp@chr8:57353982..57353991, -
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_956986b26209a2ad8c61a97071caf18cp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_956986b26209a2ad8c61a97071caf18cp7@SHOX2
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_956986b26209a2ad8c61a97071caf18cp10@ITGA8
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_956986b26209a2ad8c61a97071caf18cp7@SHOX2
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_b25d1878dbde1759a773dea883f51371p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_b25d1878dbde1759a773dea883f51371p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_b25d1878dbde1759a773dea883f51371p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_b25d1878dbde1759a773dea883f51371p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_b25d1878dbde1759a773dea883f51371p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_b25d1878dbde1759a773dea883f51371p@chr22:28193943..28193956, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_b76296b700a24999d23178cb8609da04p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_b76296b700a24999d23178cb8609da04p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_9324640223514a8d21f1dbe23e3ab008p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_9324640223514a8d21f1dbe23e3ab008p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_9324640223514a8d21f1dbe23e3ab008p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_9324640223514a8d21f1dbe23e3ab008p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_9324640223514a8d21f1dbe23e3ab008p18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_9324640223514a8d21f1dbe23e3ab008p@chr14:89044406..89044416, +
4.2e-29FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_aec83d49f41789088b587492eeb7adaap11@MAB21L2
4.2e-29FFCP PHASE1:Hg19::chr1:6615468..6615485,+#_aec83d49f41789088b587492eeb7adaap1@TAS1R1










Property "Property value" (as page type) with input value "UBPROP:0000001 "Anatomical cluster that is the upper roof of the mouth that is underlain by bones such as the parasphenoid, vomer, metapterygoid, orbitosphenoid.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0005620&oldid=3277792"