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UBERON:0008886: Difference between revisions

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|located_in=
|located_in=
|name=pulmonary vascular system
|name=pulmonary vascular system
|namespace=
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=UBERON:0004535
|part_of=UBERON:0004535

Latest revision as of 18:04, 12 September 2014

Name:pulmonary vascular system
Namespace:FANTOM
Definition:"Subdivision of cardiovascular system which has as its parts the pulmonary arterial and venous tree organs." [FMA:45621, Wikipedia:Pulmonary_circulation]
Xrefs:
links:
FMA:45621
Synonyms: "pulmonary circulatory system" EXACT [FMA:45621]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0007798(vascular system)
part_of:UBERON:0004535(cardiovascular system)



Children

part of:UBERON:0002012 (pulmonary artery)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

  • 11250-116E8 (Fibroblast - Pulmonary Artery, donor1)
  • 11288-117A1 (Smooth Muscle Cells - Pulmonary Artery, donor1)
  • 11365-117I6 (Smooth Muscle Cells - Pulmonary Artery, donor2)
  • 11437-118H6 (Smooth Muscle Cells - Pulmonary Artery, donor3)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0008886 (pulmonary vascular system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data