FFCP PHASE1:Hg19::chr12:93399866..93399909,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:93399866..93399909,+ | |||
|coexpression_cluster_id=C228 | |coexpression_cluster_id=C228 | ||
|description=CAGE_peak_at_chr12:93399866..93399909,+ | |description=CAGE_peak_at_chr12:93399866..93399909,+ | ||
|id=chr12:93399866..93399909,+ | |id=chr12:93399866..93399909,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.66e-33!5;CL:0000181!1.14e-14!12;CL:0000417!1.14e-14!12;CL:0000668!1.14e-14!12;CL:0000414!1.14e-14!12;CL:0000412!1.14e-14!12;CL:0000182!1.14e-14!12;CL:0002563!1.02e-11!4;CL:0000148!4.52e-10!10;CL:0000541!4.52e-10!10;CL:0000223!2.88e-08!59;CL:0000147!2.46e-07!14;CL:0002253!8.93e-07!2 | |ontology_enrichment_celltype=CL:0002322!1.66e-33!5;CL:0000181!1.14e-14!12;CL:0000417!1.14e-14!12;CL:0000668!1.14e-14!12;CL:0000414!1.14e-14!12;CL:0000412!1.14e-14!12;CL:0000182!1.14e-14!12;CL:0002563!1.02e-11!4;CL:0000148!4.52e-10!10;CL:0000541!4.52e-10!10;CL:0000223!2.88e-08!59;CL:0000147!2.46e-07!14;CL:0002253!8.93e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002322;9.22e-28;5!CL:0000182;5.39e-21;12!CL:0002563;2.01e-16;4!CL:0000148;3.06e-14;10!CL:0000147;2.38e-10;14!CL:0002321;1.07e-09;15!CL:0002253;3.43e-09;2!CL:0000710;2.07e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,9.22e-28,5;CL:0000182,5.39e-21,12;CL:0002563,2.09e-16,4;CL:0000148,3.06e-14,10;CL:0000541,3.06e-14,10;CL:0000223,1.25e-12,58;CL:0000147,2.38e-10,14;CL:0002253,3.43e-09,2;CL:0000710,2.07e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.26e-23;11!UBERON:0009497;2.07e-19;13!UBERON:0003104;1.47e-12;31!UBERON:0001041;1.40e-08;30!CL:0000223;5.15e-08;58 | |||
|ontology_enrichment_disease=DOID:0050619!9.61e-12!1;DOID:1357!9.61e-12!1 | |ontology_enrichment_disease=DOID:0050619!9.61e-12!1;DOID:1357!9.61e-12!1 | ||
|ontology_enrichment_disease_v019=DOID:0050619;2.63e-16;1!DOID:1357;2.63e-16;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0050619,3.07e-16,1;DOID:1357,3.07e-16,1 | |||
|ontology_enrichment_uberon=UBERON:0001764!9.61e-12!1;UBERON:0001825!9.61e-12!1;UBERON:0001242!1.02e-11!4;UBERON:0001262!1.02e-11!4;UBERON:0004786!1.02e-11!4;UBERON:0004808!1.02e-11!4;UBERON:0001277!1.02e-11!4;UBERON:0003350!1.49e-09!5;UBERON:0002107!2.44e-09!19;UBERON:0006925!2.44e-09!19;UBERON:0008836!2.44e-09!19;UBERON:0003929!4.25e-09!54;UBERON:0008835!4.36e-08!22;UBERON:0003894!4.36e-08!22;UBERON:0009854!9.67e-08!23;UBERON:0007499!3.93e-07!25;UBERON:0009497!3.93e-07!25;UBERON:0000015!3.93e-07!25;UBERON:0002423!3.93e-07!25;UBERON:0006235!3.93e-07!25;UBERON:0004161!3.93e-07!25;UBERON:0005057!7.31e-07!26;UBERON:0009856!7.31e-07!26 | |ontology_enrichment_uberon=UBERON:0001764!9.61e-12!1;UBERON:0001825!9.61e-12!1;UBERON:0001242!1.02e-11!4;UBERON:0001262!1.02e-11!4;UBERON:0004786!1.02e-11!4;UBERON:0004808!1.02e-11!4;UBERON:0001277!1.02e-11!4;UBERON:0003350!1.49e-09!5;UBERON:0002107!2.44e-09!19;UBERON:0006925!2.44e-09!19;UBERON:0008836!2.44e-09!19;UBERON:0003929!4.25e-09!54;UBERON:0008835!4.36e-08!22;UBERON:0003894!4.36e-08!22;UBERON:0009854!9.67e-08!23;UBERON:0007499!3.93e-07!25;UBERON:0009497!3.93e-07!25;UBERON:0000015!3.93e-07!25;UBERON:0002423!3.93e-07!25;UBERON:0006235!3.93e-07!25;UBERON:0004161!3.93e-07!25;UBERON:0005057!7.31e-07!26;UBERON:0009856!7.31e-07!26 | ||
|ontology_enrichment_uberon_v019=UBERON:0001242;2.01e-16;4!UBERON:0001262;2.01e-16;4!UBERON:0004786;2.01e-16;4!UBERON:0004808;2.01e-16;4!UBERON:0001277;2.01e-16;4!UBERON:0001764;2.63e-16;1!UBERON:0001825;2.63e-16;1!UBERON:0002107;2.16e-13;19!UBERON:0006925;2.16e-13;19!UBERON:0002423;3.01e-10;25!UBERON:0000485;8.53e-10;7!UBERON:0003929;8.53e-10;7!UBERON:0003350;1.11e-08;8!UBERON:0002365;6.56e-08;31!UBERON:0002330;6.56e-08;31!UBERON:0002368;3.10e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,2.09e-16,4;UBERON:0001262,2.09e-16,4;UBERON:0004786,2.09e-16,4;UBERON:0004808,2.09e-16,4;UBERON:0001277,2.09e-16,4;UBERON:0001764,3.07e-16,1;UBERON:0001825,3.07e-16,1;UBERON:0003929,1.35e-13,54;UBERON:0002107,2.16e-13,19;UBERON:0006925,2.16e-13,19;UBERON:0008836,2.16e-13,19;UBERON:0008835,1.31e-11,22;UBERON:0003894,1.31e-11,22;UBERON:0009854,4.08e-11,23;UBERON:0007499,3.01e-10,25;UBERON:0009497,3.01e-10,25;UBERON:0000015,3.01e-10,25;UBERON:0002423,3.01e-10,25;UBERON:0006235,3.01e-10,25;UBERON:0004161,3.01e-10,25;UBERON:0009856,7.28e-10,26;UBERON:0005911,8.60e-09,82;UBERON:0003350,1.13e-08,8;UBERON:0002365,2.60e-08,31;UBERON:0002330,2.60e-08,31;UBERON:0000485,8.31e-08,9;UBERON:0002368,2.19e-07,35 | |||
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|short_description=p@chr12:93399866..93399909,+ | |short_description=p@chr12:93399866..93399909,+ | ||
}} | }} |
Latest revision as of 13:39, 24 July 2015
Short description: | p@chr12:93399866..93399909, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:93399866..93399909, + |
Coexpression cluster: | C228_colon_Intestinal_Prostate_hepatoblastoma_hepatocellular_testis_adult |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 9.22e-28 | 5 |
hepatocyte | 5.39e-21 | 12 |
intestinal epithelial cell | 2.09e-16 | 4 |
melanocyte | 3.06e-14 | 10 |
melanoblast | 3.06e-14 | 10 |
endodermal cell | 1.25e-12 | 58 |
pigment cell | 2.38e-10 | 14 |
epithelial cell of large intestine | 3.43e-09 | 2 |
neurecto-epithelial cell | 2.07e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 2.09e-16 | 4 |
wall of intestine | 2.09e-16 | 4 |
gastrointestinal system mucosa | 2.09e-16 | 4 |
gastrointestinal system epithelium | 2.09e-16 | 4 |
intestinal epithelium | 2.09e-16 | 4 |
maxillary sinus | 3.07e-16 | 1 |
paranasal sinus | 3.07e-16 | 1 |
gut epithelium | 1.35e-13 | 54 |
liver | 2.16e-13 | 19 |
digestive gland | 2.16e-13 | 19 |
liver bud | 2.16e-13 | 19 |
hepatic diverticulum | 1.31e-11 | 22 |
liver primordium | 1.31e-11 | 22 |
digestive tract diverticulum | 4.08e-11 | 23 |
epithelial sac | 3.01e-10 | 25 |
epithelium of foregut-midgut junction | 3.01e-10 | 25 |
anatomical boundary | 3.01e-10 | 25 |
hepatobiliary system | 3.01e-10 | 25 |
foregut-midgut junction | 3.01e-10 | 25 |
septum transversum | 3.01e-10 | 25 |
sac | 7.28e-10 | 26 |
endo-epithelium | 8.60e-09 | 82 |
epithelium of mucosa | 1.13e-08 | 8 |
exocrine gland | 2.60e-08 | 31 |
exocrine system | 2.60e-08 | 31 |
simple columnar epithelium | 8.31e-08 | 9 |
endocrine gland | 2.19e-07 | 35 |
Ontology term | p-value | n |
---|---|---|
paranasal sinus cancer | 3.07e-16 | 1 |
maxillary sinus cancer | 3.07e-16 | 1 |