FFCP PHASE1:Hg19::chr13:28025374..28025385,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:28025374..28025385,- | |||
|description=CAGE_peak_at_chr13:28025374..28025385,- | |description=CAGE_peak_at_chr13:28025374..28025385,- | ||
|id=chr13:28025374..28025385,- | |id=chr13:28025374..28025385,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000650;2.37e-10;2!CL:1000500;2.37e-10;2!CL:1000618;2.37e-10;2!CL:1001318;2.37e-10;2!CL:0002173;2.37e-10;2!CL:1000507;3.62e-08;10!CL:1000494;3.62e-08;10 | |ontology_enrichment_celltype_v019=CL:0000650;2.37e-10;2!CL:1000500;2.37e-10;2!CL:1000618;2.37e-10;2!CL:1001318;2.37e-10;2!CL:0002173;2.37e-10;2!CL:1000507;3.62e-08;10!CL:1000494;3.62e-08;10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000650,3.58e-10,2;CL:1000500,3.58e-10,2;CL:1000618,3.58e-10,2;CL:1001318,3.58e-10,2;CL:0002173,3.58e-10,2;CL:1000507,3.90e-08,10;CL:1000494,3.90e-08,10 | |||
|ontology_enrichment_development_v019=UBERON:0008425;2.47e-19;1 | |ontology_enrichment_development_v019=UBERON:0008425;2.47e-19;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!3.57e-09!511;UBERON:0007023!5.21e-08!115 | |ontology_enrichment_uberon=UBERON:0000062!3.57e-09!511;UBERON:0007023!5.21e-08!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;2.33e-16;17!UBERON:0002108;2.17e-15;4!UBERON:0005409;6.91e-13;22!UBERON:0001905;2.37e-10;2!UBERON:0002757;2.37e-10;2!UBERON:0010134;2.37e-10;2!UBERON:0003567;2.37e-10;2!UBERON:0003838;2.37e-10;2!UBERON:0003586;2.37e-10;2!UBERON:0005169;2.37e-10;2!UBERON:0005408;2.37e-10;2!UBERON:0002321;2.37e-10;2!UBERON:0005215;2.37e-10;2!UBERON:0002303;2.37e-10;2!UBERON:0001899;2.37e-10;2!UBERON:0002319;2.37e-10;2!UBERON:0004211;3.62e-08;10!UBERON:0009773;3.62e-08;10!UBERON:0001231;3.62e-08;10!UBERON:0004810;3.62e-08;10!UBERON:0004921;8.03e-08;33!UBERON:0002113;2.22e-07;24!UBERON:0011143;2.22e-07;24 | |ontology_enrichment_uberon_v019=UBERON:0000160;2.33e-16;17!UBERON:0002108;2.17e-15;4!UBERON:0005409;6.91e-13;22!UBERON:0001905;2.37e-10;2!UBERON:0002757;2.37e-10;2!UBERON:0010134;2.37e-10;2!UBERON:0003567;2.37e-10;2!UBERON:0003838;2.37e-10;2!UBERON:0003586;2.37e-10;2!UBERON:0005169;2.37e-10;2!UBERON:0005408;2.37e-10;2!UBERON:0002321;2.37e-10;2!UBERON:0005215;2.37e-10;2!UBERON:0002303;2.37e-10;2!UBERON:0001899;2.37e-10;2!UBERON:0002319;2.37e-10;2!UBERON:0004211;3.62e-08;10!UBERON:0009773;3.62e-08;10!UBERON:0001231;3.62e-08;10!UBERON:0004810;3.62e-08;10!UBERON:0004921;8.03e-08;33!UBERON:0002113;2.22e-07;24!UBERON:0011143;2.22e-07;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.57e-16,17;UBERON:0002108,1.51e-15,4;UBERON:0005409,1.47e-11,25;UBERON:0001905,2.99e-10,2;UBERON:0002757,2.99e-10,2;UBERON:0010134,2.99e-10,2;UBERON:0005408,2.99e-10,2;UBERON:0001899,2.99e-10,2;UBERON:0003567,3.58e-10,2;UBERON:0003838,3.58e-10,2;UBERON:0003586,3.58e-10,2;UBERON:0005169,3.58e-10,2;UBERON:0002321,3.58e-10,2;UBERON:0005215,3.58e-10,2;UBERON:0002303,3.58e-10,2;UBERON:0002319,3.58e-10,2;UBERON:0004810,3.90e-08,10;UBERON:0002113,8.37e-07,26;UBERON:0003918,8.37e-07,26;UBERON:0011143,8.37e-07,26;UBERON:0005095,8.37e-07,26;UBERON:0007687,8.37e-07,26 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0.587200878669695,0,0.401088894940283,0,0,0,0,0,0,0.242584061187816,0.232429036905685,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628975936525128,0.336985893439485,0.150176892841506,0.32145117339416,0.855038231223746,0,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0.50133791063589,0.144846518960824,0,0,0,0,0.175669571386252,0.261958150995425,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47586126251736,0.343135620597051,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0.234004265139238,0,0,0.16798212819886,0.141775097242386,0.268675568108545,0.290633938513962,0,0,0,0.207328115540772,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0.601519410909855,0.184161977871793,0,0,0,0,0.539107359730903,0.784349769176855,1.46139224653261,0.633309773357254,0,0,0,0,0,1.00337954770971,0.254876273045038,0,0,0,0,0,0,0.325378394664303,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196498082026242,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,1.18785872333055,0.307160702099232,0,0.281338832821026,0,0,0,0,0,0.251932747854276,0,0,0,0,0.358042349351218,0,0,0,0,0,0.0927680981618513,0,0,1.22443999994674,0,0,0.254253650292766,0,0,0,0,0,0,0,0.331737779793674,0,0,0.32681539055697,0.41827123283581,0,0,0,0.269272933229316,0.325942115766024,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0.424059214301822,0,0,0.973033209536731,0.611030144933625,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0,0.17472666824203,0,0.0967563312890851,0.0730893170861856,0,0,0,0,0,0,0.443175571691151,0.195551382734803,0,0.426905989478705,0,0.144090417154106,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0.859530882839914,0,0,0,0,0,0,0.669514372325618,0.268733889946905,0,0,0.157566364614447,0.0824158583811665,0.13480708770837,0.0984274815147488,0,0,0,0,0,0,0,0,0.485996453264197,0.335434687599266,1.02447419488958,0.472091293214983,0,0,0.191915197319445,0,0,0,0,0,0.326587360109409,0,0.082092520749339,0,0,0,0,0,0.13223260174269,0,0,0.320362237703084,0.157204305099666,0,0,0,0,0,0,0,0,0.327872630709804,0,0.886068179966986,0.488105059607853,0.250381861413,0.573409195690071,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0.428883182749851,0,0,0.231522474323834,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.345786262321089,0,0,0.196295437002051,0.235939446695481,0,0.231051332300676,0,0,0,0,0.20170506870352,0.781514011233092,0.261906694481422,0,0.591424344868181,0.202612753855184,0,0.206686796501184,0.317079050969534,0,0.548257766857182,0,0,0.127762427639595,1.07140367175657,0,0,0,0.266107110487916,0,0,0.0679697329768317,0.263091094251396,0,0.111231401892069,0,0,1.40136081656895,0,0,0.47775168788705,0,0,0,0,0,0,0.17071847709395,0,0.860454717640555,0,0,0.423387050190929,0.4582137370881,0,0,0.335566295393377,0.294450700845729,0.853425474875886,0,0,0,0,0.233939463462106,0,0,0,0,0,1.62065732026684,1.31135736302374,0,0,0,0,0,0,0,0,0.0644578879735772,0,0.357107877211315,0,0.481448200135009,0,0.458729283404541,0.143339583151451,0,0.203974470572744,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0.829169439458779,0,0,0,0,0,0,0.700118741059814,0,0.217716747896961,0,0.202056159043763,0.286888821570705,0,0.0814032686109745,0,0,0.0898252021065869,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0.587200878669695,0,0.401088894940283,0,0,0,0,0,0,0.242584061187816,0.232429036905685,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628975936525128,0.336985893439485,0.150176892841506,0.32145117339416,0.855038231223746,0,0.365328307529268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270803863765016,0,0.130059347559878,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0,0.50133791063589,0.144846518960824,0,0,0,0,0.175669571386252,0.261958150995425,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0.354920400119532,0.168584690078102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47586126251736,0.343135620597051,0,0,0,0.0925884451585296,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0.234004265139238,0,0,0.16798212819886,0.141775097242386,0.268675568108545,0.290633938513962,0,0,0,0.207328115540772,0.288239906833923,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0.099972991182057,0,0,0,0,0,0,0,0.205476322550383,0,0,0.197030760201927,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.606255142892519,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0.601519410909855,0.184161977871793,0,0,0,0,0.539107359730903,0.784349769176855,1.46139224653261,0.633309773357254,0,0,0,0,0,1.00337954770971,0.254876273045038,0,0,0,0,0,0,0.325378394664303,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0,0.127612712494584,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196498082026242,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,1.18785872333055,0.307160702099232,0,0.281338832821026,0,0,0,0,0,0.251932747854276,0,0,0,0,0.358042349351218,0,0,0,0,0,0.0927680981618513,0,0,1.22443999994674,0,0,0.254253650292766,0,0,0,0,0,0,0,0.331737779793674,0,0,0.32681539055697,0.41827123283581,0,0,0,0.269272933229316,0.325942115766024,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0.424059214301822,0,0,0.973033209536731,0.611030144933625,0,0,0,0.134802265961354,0,0.234264445725339,0,0,0,0,0,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0,0,0.173559738335131,0.0979923974143777,0,0.17472666824203,0,0.0967563312890851,0.0730893170861856,0,0,0,0,0,0,0.443175571691151,0.195551382734803,0,0.426905989478705,0,0.144090417154106,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0.859530882839914,0,0,0,0,0,0,0.669514372325618,0.268733889946905,0,0,0.157566364614447,0.0824158583811665,0.13480708770837,0.0984274815147488,0,0,0,0,0,0,0,0,0.485996453264197,0.335434687599266,1.02447419488958,0.472091293214983,0,0,0.191915197319445,0,0,0,0,0,0.326587360109409,0,0.082092520749339,0,0,0,0,0,0.13223260174269,0,0,0.320362237703084,0.157204305099666,0,0,0,0,0,0,0,0,0.327872630709804,0,0.886068179966986,0.488105059607853,0.250381861413,0.573409195690071,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0.428883182749851,0,0,0.231522474323834,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0.205116364240755,0,0.345786262321089,0,0,0.196295437002051,0.235939446695481,0,0.231051332300676,0,0,0,0,0.20170506870352,0.781514011233092,0.261906694481422,0,0.591424344868181,0.202612753855184,0,0.206686796501184,0.317079050969534,0,0.548257766857182,0,0,0.127762427639595,1.07140367175657,0,0,0,0.266107110487916,0,0,0.0679697329768317,0.263091094251396,0,0.111231401892069,0,0,1.40136081656895,0,0,0.47775168788705,0,0,0,0,0,0,0.17071847709395,0,0.860454717640555,0,0,0.423387050190929,0.4582137370881,0,0,0.335566295393377,0.294450700845729,0.853425474875886,0,0,0,0,0.233939463462106,0,0,0,0,0,1.62065732026684,1.31135736302374,0,0,0,0,0,0,0,0,0.0644578879735772,0,0.357107877211315,0,0.481448200135009,0,0.458729283404541,0.143339583151451,0,0.203974470572744,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.303114792872958,0,0.829169439458779,0,0,0,0,0,0,0.700118741059814,0,0.217716747896961,0,0.202056159043763,0.286888821570705,0,0.0814032686109745,0,0,0.0898252021065869,0,0,0.406896178315738,0,0,0 | ||
|short_description=p@chr13:28025374..28025385,- | |short_description=p@chr13:28025374..28025385,- | ||
}} | }} |
Latest revision as of 15:20, 24 July 2015
Short description: | p@chr13:28025374..28025385, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:28025374..28025385, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesangial cell | 3.58e-10 | 2 |
kidney interstitial cell | 3.58e-10 | 2 |
juxtaglomerular complex cell | 3.58e-10 | 2 |
renal interstitial pericyte | 3.58e-10 | 2 |
extraglomerular mesangial cell | 3.58e-10 | 2 |
kidney tubule cell | 3.90e-08 | 10 |
nephron tubule epithelial cell | 3.90e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.57e-16 | 17 |
small intestine | 1.51e-15 | 4 |
gastrointestinal system | 1.47e-11 | 25 |
pineal body | 2.99e-10 | 2 |
regional part of epithalamus | 2.99e-10 | 2 |
secretory circumventricular organ | 2.99e-10 | 2 |
circumventricular organ | 2.99e-10 | 2 |
epithalamus | 2.99e-10 | 2 |
abdomen connective tissue | 3.58e-10 | 2 |
abdominal segment connective tissue | 3.58e-10 | 2 |
trunk connective tissue | 3.58e-10 | 2 |
interstitial tissue | 3.58e-10 | 2 |
extraglomerular mesangium | 3.58e-10 | 2 |
kidney interstitium | 3.58e-10 | 2 |
juxtaglomerular apparatus | 3.58e-10 | 2 |
mesangium | 3.58e-10 | 2 |
nephron tubule epithelium | 3.90e-08 | 10 |
kidney | 8.37e-07 | 26 |
kidney mesenchyme | 8.37e-07 | 26 |
upper urinary tract | 8.37e-07 | 26 |
kidney rudiment | 8.37e-07 | 26 |
kidney field | 8.37e-07 | 26 |