FFCP PHASE1:Hg19::chr13:41138416..41138419,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:41138416..41138419,- | |||
|description=CAGE_peak_at_chr13:41138416..41138419,- | |description=CAGE_peak_at_chr13:41138416..41138419,- | ||
|id=chr13:41138416..41138419,- | |id=chr13:41138416..41138419,- | ||
|ontology_enrichment_celltype=CL:0000542!2.90e-10!53;CL:0000051!2.90e-10!53;CL:0000838!8.95e-10!52 | |ontology_enrichment_celltype=CL:0000542!2.90e-10!53;CL:0000051!2.90e-10!53;CL:0000838!8.95e-10!52 | ||
|ontology_enrichment_celltype_v019=CL:0000791;2.37e-23;18!CL:0000789;2.37e-23;18!CL:0002419;2.37e-23;18!CL:0000624;8.31e-23;6!CL:0000084;2.19e-16;25!CL:0000815;1.40e-11;2!CL:0000792;1.40e-11;2!CL:0002677;1.40e-11;2!CL:0000542;1.57e-11;53!CL:0000226;2.54e-08;3!CL:0000623;2.54e-08;3!CL:0000842;2.54e-08;3!CL:0000625;2.82e-08;11!CL:0000898;5.24e-08;3!CL:0000236;8.90e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.59e-23,18;CL:0000789,1.59e-23,18;CL:0002420,1.59e-23,18;CL:0002419,1.59e-23,18;CL:0000790,1.59e-23,18;CL:0000624,5.30e-23,6;CL:0000838,1.38e-20,52;CL:0000542,3.88e-20,53;CL:0000051,3.88e-20,53;CL:0000084,1.65e-16,25;CL:0000827,1.65e-16,25;CL:0002087,6.22e-13,115;CL:0000815,1.07e-11,2;CL:0000792,1.07e-11,2;CL:0002677,1.07e-11,2;CL:0000738,1.10e-11,136;CL:0002031,1.82e-09,120;CL:0000037,1.15e-08,168;CL:0000623,1.90e-08,3;CL:0000825,1.90e-08,3;CL:0000625,2.57e-08,11;CL:0000226,3.54e-08,3;CL:0000842,3.54e-08,3;CL:0000898,4.39e-08,3;CL:0000988,5.12e-08,177;CL:0002032,3.86e-07,161;CL:0000837,3.86e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;2.37e-23;18!CL:0000051;1.57e-11;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.85e-13!115 | |ontology_enrichment_uberon=UBERON:0007023!7.85e-13!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0000341;6.50e-12;2!UBERON:0001389;4.18e-07;1!UBERON:0000026;4.18e-07;1!UBERON:0008784;4.18e-07;1!UBERON:0006058;4.18e-07;1!UBERON:0003663;4.18e-07;1!UBERON:0004256;4.18e-07;1!UBERON:0004708;4.18e-07;1!UBERON:0002101;4.18e-07;1!UBERON:0004709;4.18e-07;1!UBERON:0002529;4.18e-07;1!UBERON:0010538;4.18e-07;1!UBERON:0003661;4.18e-07;1!UBERON:0010890;4.18e-07;1!UBERON:0002471;4.18e-07;1!UBERON:0001383;4.18e-07;1!UBERON:0010758;4.18e-07;1!UBERON:0010707;4.18e-07;1!UBERON:0000978;4.18e-07;1!UBERON:0002103;4.18e-07;1!UBERON:0001665;4.18e-07;1!UBERON:0003823;4.18e-07;1!UBERON:0000154;4.18e-07;1!UBERON:0010709;4.18e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000341,1.07e-11,2;UBERON:0005418,4.18e-07,1;UBERON:0001389,4.18e-07,1;UBERON:0000026,4.18e-07,1;UBERON:0008784,4.18e-07,1;UBERON:0006058,4.18e-07,1;UBERON:0003663,4.18e-07,1;UBERON:0004256,4.18e-07,1;UBERON:0004708,4.18e-07,1;UBERON:0002101,4.18e-07,1;UBERON:0004709,4.18e-07,1;UBERON:0002529,4.18e-07,1;UBERON:0010538,4.18e-07,1;UBERON:0003661,4.18e-07,1;UBERON:0010890,4.18e-07,1;UBERON:0002471,4.18e-07,1;UBERON:0001383,4.18e-07,1;UBERON:0004357,4.18e-07,1;UBERON:0004347,4.18e-07,1;UBERON:0005420,4.18e-07,1;UBERON:0005732,4.18e-07,1;UBERON:0010758,4.18e-07,1;UBERON:0010707,4.18e-07,1;UBERON:0000978,4.18e-07,1;UBERON:0002103,4.18e-07,1;UBERON:0001665,4.18e-07,1;UBERON:0003823,4.18e-07,1;UBERON:0000154,4.18e-07,1;UBERON:0010709,4.18e-07,1;UBERON:0005733,4.18e-07,1;UBERON:0005730,4.18e-07,1 | |||
|phase1_expression=0,0.214100523890983,0.422863212287913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0,0.0821005894499457,0,0,0.383829398097213,0.154816123316076,0,0,0,0.309868802321207,0.426507697462265,0,0,2.00544447470142,2.38711957787437,0,0.32389366601898,0,0,0.377875943688809,0.242584061187816,0,0.411167888021826,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0.212604299965044,0,0.112328631146495,0,0,0.855038231223746,0,0.547992461293902,0,0.546138611262131,0,1.70692089026603,0.400395987036012,0,0,0,1.1384259382189,2.34894875748376,1.52909291250092,0,0.560508562981536,0.263384084775077,1.57367816091066,6.6811829667358,3.90642848099067,0,1.30368906653436,0.946895611469467,1.94826728407911,0.222820913770347,1.76763544484902,0.443067789167242,0,0.384273959177026,0.780356085359269,0.493313713811028,1.10540007114339,0.289803085735052,0.444859689486181,0.802622484269139,0,0.339928028092699,0,0.34362744548263,0,0,0,0,0.150575119077773,0,1.24930726552346,0,0,1.81446068902259,4.27904313253612,4.92402973201517,0,0,0,0,0,0,0,0.486634870302636,0,0.221729397462564,0.087834785693126,0.327447688744282,0,0.370784442784429,0,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0.446498641420399,0,0,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0.269421344139376,0.163461903113459,0,0.576175924479999,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.365921118388786,0,0,0,0,1.09493207722749,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0.982827216677626,1.77236972004421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.432359860250884,0,0,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0.179060963239896,0.112085143993527,0.788123040807709,3.01878604803324,1.92514554419623,0,0,0,0,0,0,2.99161459204025,0.414415513436035,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,3.45142721309787,0.74709290462411,0,0,0,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,0,0,0.0920809889358963,0,0,0,0,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0.183138929636687,0.082509499920588,0,0,0,0,0,0,0,0.214840489736547,0,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0.238231775457789,0.411362273086194,0,0,0,0,0,0.245040215981032,0.371606350251437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.439524537815682,0,0,0.284136146806413,0,0,0,0,0.703347082052564,0.333926115068718,0,0,0.19924798825107,0.828851746593443,0.503865495708552,0.102268682502155,0,0,0,0,0,0.0986434056369336,0,0,0.969332746095218,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0.885741385813839,0.120596438625408,0,0.221158519862449,0,0,0,0,0.384751292518985,0,0,0.269272933229316,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0.176915129006678,0,0.593042257361244,0.247127877893006,0.104421949505455,0.067401132980677,0.802577647298789,0.234264445725339,0.547364367646998,0,0,0,0,0,0.442306057399416,0,0,0,0,0,0,0,0,0.173559738335131,0,0,0.34945333648406,0,0,0,0,0.0969890164884194,0,0.225980740780532,0,0,0,0.391102765469606,0.0801588202515337,1.06726497369676,0.19980960958213,0,0,0,0.288109595976299,0,0,0,0,0,0.288950589901519,3.00210144354895,0.547621515567972,0,0,0.525774708558629,0,0.458320848023367,0,0.199679000498991,0,0.223171457441873,0,0,0,0,0.0824158583811665,0.0674035438541849,0,0.169346664131569,0,0.136203406111576,0.321506296930038,0.550157746388935,0,0,0.77380195455795,0,0.670869375198532,0.157611414598396,0.104909176269996,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.517131825446202,0,0,0,0.213574825135389,0,0.414239055347196,0.496166021811951,0.197611631897944,0.121792598380896,0,4.35214242695579,2.7575888342497,1.22538230705385,0.327872630709804,0,0,0,0.1251909307065,0.573409195690071,0.110929051536852,0.124192805882767,0.138348634936231,0,0,0.285465333544967,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0.176689145945881,0,0,0,0,0,0.276516872303462,0,0,0,0.327609848846413,0,0,0.59996218756479,0,0,0,0,0,0,0,0,0,0,0,0.425149840203366,0.247871528518004,0,0,0.630893960010027,0,0,0,0.321146125482298,1.41696576325585,0.159633859057151,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0.150420656698515,0.20170506870352,0.781514011233092,0,0,0.147856086217045,0.0675375846183947,0,0,0,0.546974809018219,0,0,0.175871244359621,0.638812138197976,0,0,0,0.227662191351298,0.177404740325278,0.115233987555779,0,0.135939465953663,0,0.354581522651905,0,0,0.314231179832004,0,0.913158720509496,0.215927591218621,0,0.0714765441766563,0,0,0,0,0.207216164163037,0.51215543128185,0,0,0,0,0.423387050190929,2.06196181689645,0,0,0.111855431797792,0,0.365753774946808,3.23714418593947,0.205325613712494,0,0,0,0,0,0,0.219881033490858,0.15096284356667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| ||
|short_description=p@chr13:41138416..41138419,- | |short_description=p@chr13:41138416..41138419,- | ||
}} | }} |
Latest revision as of 15:57, 24 July 2015
Short description: | p@chr13:41138416..41138419, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:41138416..41138419, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.59e-23 | 18 |
alpha-beta T cell | 1.59e-23 | 18 |
immature T cell | 1.59e-23 | 18 |
mature T cell | 1.59e-23 | 18 |
immature alpha-beta T cell | 1.59e-23 | 18 |
CD4-positive, alpha-beta T cell | 5.30e-23 | 6 |
lymphoid lineage restricted progenitor cell | 1.38e-20 | 52 |
lymphocyte | 3.88e-20 | 53 |
common lymphoid progenitor | 3.88e-20 | 53 |
T cell | 1.65e-16 | 25 |
pro-T cell | 1.65e-16 | 25 |
nongranular leukocyte | 6.22e-13 | 115 |
regulatory T cell | 1.07e-11 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.07e-11 | 2 |
naive regulatory T cell | 1.07e-11 | 2 |
leukocyte | 1.10e-11 | 136 |
hematopoietic lineage restricted progenitor cell | 1.82e-09 | 120 |
hematopoietic stem cell | 1.15e-08 | 168 |
natural killer cell | 1.90e-08 | 3 |
pro-NK cell | 1.90e-08 | 3 |
CD8-positive, alpha-beta T cell | 2.57e-08 | 11 |
single nucleate cell | 3.54e-08 | 3 |
mononuclear cell | 3.54e-08 | 3 |
naive T cell | 4.39e-08 | 3 |
hematopoietic cell | 5.12e-08 | 177 |
hematopoietic oligopotent progenitor cell | 3.86e-07 | 161 |
hematopoietic multipotent progenitor cell | 3.86e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
throat | 1.07e-11 | 2 |
hindlimb bud | 4.18e-07 | 1 |
soleus muscle | 4.18e-07 | 1 |
appendage | 4.18e-07 | 1 |
lower limb segment | 4.18e-07 | 1 |
multi-limb segment region | 4.18e-07 | 1 |
hindlimb muscle | 4.18e-07 | 1 |
hindlimb zeugopod muscle | 4.18e-07 | 1 |
paired limb/fin | 4.18e-07 | 1 |
limb | 4.18e-07 | 1 |
pelvic appendage | 4.18e-07 | 1 |
limb segment | 4.18e-07 | 1 |
paired limb/fin segment | 4.18e-07 | 1 |
limb muscle | 4.18e-07 | 1 |
pelvic complex muscle | 4.18e-07 | 1 |
zeugopod | 4.18e-07 | 1 |
muscle of leg | 4.18e-07 | 1 |
paired limb/fin bud | 4.18e-07 | 1 |
limb bud | 4.18e-07 | 1 |
pelvic appendage bud | 4.18e-07 | 1 |
limb/fin field | 4.18e-07 | 1 |
subdivision of organism along appendicular axis | 4.18e-07 | 1 |
appendage girdle complex | 4.18e-07 | 1 |
leg | 4.18e-07 | 1 |
hindlimb | 4.18e-07 | 1 |
triceps surae | 4.18e-07 | 1 |
hindlimb zeugopod | 4.18e-07 | 1 |
posterior region of body | 4.18e-07 | 1 |
pelvic complex | 4.18e-07 | 1 |
limb field | 4.18e-07 | 1 |
hindlimb/pelvic fin field | 4.18e-07 | 1 |