FFCP PHASE1:Hg19::chr14:107170052..107170092,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_AF460718,AF460720,AF460732,AF460746,AF460772,AY179836,AY179837,AY179838,AY179839,AY179840,AY179841,AY179842,AY179843,AY179844,AY179845,AY179846,AY179847,AY179848,AY179849,AY179850,AY179851,AY179852,AY179853,AY179854,AY179855,AY179856,AY179857,AY179858,AY179859,AY179860,AY179861_5end | |association_with_transcript=0bp_to_AF460718,AF460720,AF460732,AF460746,AF460772,AY179836,AY179837,AY179838,AY179839,AY179840,AY179841,AY179842,AY179843,AY179844,AY179845,AY179846,AY179847,AY179848,AY179849,AY179850,AY179851,AY179852,AY179853,AY179854,AY179855,AY179856,AY179857,AY179858,AY179859,AY179860,AY179861_5end | ||
|cluster_id=chr14:107170052..107170092,- | |||
|coexpression_cluster_id=C179 | |coexpression_cluster_id=C179 | ||
|description=CAGE_peak_1_at_AF460718_5end,CAGE_peak_1_at_AF460720_5end,CAGE_peak_1_at_AF460732_5end,CAGE_peak_1_at_AF460746_5end,CAGE_peak_1_at_AF460772_5end,CAGE_peak_1_at_AY179836_5end,CAGE_peak_1_at_AY179837_5end,CAGE_peak_1_at_AY179838_5end,CAGE_peak_1_at_AY179839_5end,CAGE_peak_1_at_AY179840_5end,CAGE_peak_1_at_AY179841_5end,CAGE_peak_1_at_AY179842_5end,CAGE_peak_1_at_AY179843_5end,CAGE_peak_1_at_AY179844_5end,CAGE_peak_1_at_AY179845_5end,CAGE_peak_1_at_AY179846_5end,CAGE_peak_1_at_AY179847_5end,CAGE_peak_1_at_AY179848_5end,CAGE_peak_1_at_AY179849_5end,CAGE_peak_1_at_AY179850_5end,CAGE_peak_1_at_AY179851_5end,CAGE_peak_1_at_AY179852_5end,CAGE_peak_1_at_AY179853_5end,CAGE_peak_1_at_AY179854_5end,CAGE_peak_1_at_AY179855_5end,CAGE_peak_1_at_AY179856_5end,CAGE_peak_1_at_AY179857_5end,CAGE_peak_1_at_AY179858_5end,CAGE_peak_1_at_AY179859_5end,CAGE_peak_1_at_AY179860_5end,CAGE_peak_1_at_AY179861_5end | |description=CAGE_peak_1_at_AF460718_5end,CAGE_peak_1_at_AF460720_5end,CAGE_peak_1_at_AF460732_5end,CAGE_peak_1_at_AF460746_5end,CAGE_peak_1_at_AF460772_5end,CAGE_peak_1_at_AY179836_5end,CAGE_peak_1_at_AY179837_5end,CAGE_peak_1_at_AY179838_5end,CAGE_peak_1_at_AY179839_5end,CAGE_peak_1_at_AY179840_5end,CAGE_peak_1_at_AY179841_5end,CAGE_peak_1_at_AY179842_5end,CAGE_peak_1_at_AY179843_5end,CAGE_peak_1_at_AY179844_5end,CAGE_peak_1_at_AY179845_5end,CAGE_peak_1_at_AY179846_5end,CAGE_peak_1_at_AY179847_5end,CAGE_peak_1_at_AY179848_5end,CAGE_peak_1_at_AY179849_5end,CAGE_peak_1_at_AY179850_5end,CAGE_peak_1_at_AY179851_5end,CAGE_peak_1_at_AY179852_5end,CAGE_peak_1_at_AY179853_5end,CAGE_peak_1_at_AY179854_5end,CAGE_peak_1_at_AY179855_5end,CAGE_peak_1_at_AY179856_5end,CAGE_peak_1_at_AY179857_5end,CAGE_peak_1_at_AY179858_5end,CAGE_peak_1_at_AY179859_5end,CAGE_peak_1_at_AY179860_5end,CAGE_peak_1_at_AY179861_5end | ||
Latest revision as of 18:46, 24 July 2015
| Short description: | p1@AF460718, p1@AF460720, p1@AF460732, p1@AF460746, p1@AF460772, p1@AY179836, p1@AY179837, p1@AY179838, p1@AY179839, p1@AY179840, p1@AY179841, p1@AY179842, p1@AY179843, p1@AY179844, p1@AY179845, p1@AY179846, p1@AY179847, p1@AY179848, p1@AY179849, p1@AY179850, p1@AY179851, p1@AY179852, p1@AY179853, p1@AY179854, p1@AY179855, p1@AY179856, p1@AY179857, p1@AY179858, p1@AY179859, p1@AY179860, p1@AY179861 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_AF460718_5end, CAGE_peak_1_at_AF460720_5end, CAGE_peak_1_at_AF460732_5end, CAGE_peak_1_at_AF460746_5end, CAGE_peak_1_at_AF460772_5end, CAGE_peak_1_at_AY179836_5end, CAGE_peak_1_at_AY179837_5end, CAGE_peak_1_at_AY179838_5end, CAGE_peak_1_at_AY179839_5end, CAGE_peak_1_at_AY179840_5end, CAGE_peak_1_at_AY179841_5end, CAGE_peak_1_at_AY179842_5end, CAGE_peak_1_at_AY179843_5end, CAGE_peak_1_at_AY179844_5end, CAGE_peak_1_at_AY179845_5end, CAGE_peak_1_at_AY179846_5end, CAGE_peak_1_at_AY179847_5end, CAGE_peak_1_at_AY179848_5end, CAGE_peak_1_at_AY179849_5end, CAGE_peak_1_at_AY179850_5end, CAGE_peak_1_at_AY179851_5end, CAGE_peak_1_at_AY179852_5end, CAGE_peak_1_at_AY179853_5end, CAGE_peak_1_at_AY179854_5end, CAGE_peak_1_at_AY179855_5end, CAGE_peak_1_at_AY179856_5end, CAGE_peak_1_at_AY179857_5end, CAGE_peak_1_at_AY179858_5end, CAGE_peak_1_at_AY179859_5end, CAGE_peak_1_at_AY179860_5end, CAGE_peak_1_at_AY179861_5end |
| Coexpression cluster: | C179_CD19_Peripheral_lymphoma_blood_lymph_spleen_tonsil |
| Association with transcript: | 0bp_to_AF460718, AF460720, AF460732, AF460746, AF460772, AY179836, AY179837, AY179838, AY179839, AY179840, AY179841, AY179842, AY179843, AY179844, AY179845, AY179846, AY179847, AY179848, AY179849, AY179850, AY179851, AY179852, AY179853, AY179854, AY179855, AY179856, AY179857, AY179858, AY179859, AY179860, AY179861_5end |
| EntrezGene: | NA |
| Genome view: | ZENBU |
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CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| B cell | 7.10e-78 | 14 |
| lymphocyte of B lineage | 1.33e-54 | 24 |
| pro-B cell | 1.33e-54 | 24 |
| lymphoid lineage restricted progenitor cell | 1.80e-24 | 52 |
| lymphocyte | 5.55e-24 | 53 |
| common lymphoid progenitor | 5.55e-24 | 53 |
| precursor B cell | 5.80e-16 | 3 |
| antibody secreting cell | 1.11e-12 | 1 |
| plasma cell | 1.11e-12 | 1 |
| plasmablast | 1.11e-12 | 1 |
| nongranular leukocyte | 3.87e-10 | 115 |
| hematopoietic lineage restricted progenitor cell | 1.18e-09 | 120 |
| leukocyte | 2.41e-08 | 136 |
| mature B cell | 5.73e-07 | 2 |
| pre-B-II cell | 5.73e-07 | 2 |
| transitional stage B cell | 5.73e-07 | 2 |
| small pre-B-II cell | 5.73e-07 | 2 |
| immature B cell | 5.73e-07 | 2 |
| hematopoietic oligopotent progenitor cell | 8.24e-07 | 161 |
| hematopoietic multipotent progenitor cell | 8.24e-07 | 161 |
| Ontology term | p-value | n |
|---|---|---|
| lymph node | 1.40e-12 | 1 |
| vermiform appendix | 1.96e-12 | 1 |
| caecum | 1.96e-12 | 1 |
| midgut | 1.96e-12 | 1 |
| tonsil | 4.31e-12 | 1 |
| mucosa-associated lymphoid tissue | 4.31e-12 | 1 |
| lymphoid tissue | 4.31e-12 | 1 |
| tonsillar ring | 4.31e-12 | 1 |
| blood | 4.52e-07 | 15 |
| haemolymphatic fluid | 4.52e-07 | 15 |
| organism substance | 4.52e-07 | 15 |
| Ontology term | p-value | n |
|---|---|---|
| genetic disease | 7.89e-13 | 1 |
| monogenic disease | 7.89e-13 | 1 |
| xeroderma pigmentosum | 7.89e-13 | 1 |
