FFCP PHASE1:Hg19::chr17:28534912..28534942,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:28534912..28534942,- | |||
|coexpression_cluster_id=C514 | |||
|description=CAGE_peak_at_chr17:28534912..28534942,- | |description=CAGE_peak_at_chr17:28534912..28534942,- | ||
|id=chr17:28534912..28534942,- | |id=chr17:28534912..28534942,- | ||
|ontology_enrichment_celltype=CL:0002139!2.50e-44!24;CL:0000115!7.66e-39!35;CL:0005020!4.19e-35!6;CL:0002138!4.19e-35!6;CL:0005022!4.19e-35!6;CL:0002078!3.50e-30!44;CL:0000213!1.52e-25!57;CL:0000215!1.52e-25!57;CL:0000071!4.03e-19!18;CL:0002546!4.03e-19!18;CL:0002144!1.94e-18!3;CL:0002618!4.94e-17!3;CL:0000222!1.04e-11!119;CL:0002543!8.95e-09!6 | |ontology_enrichment_celltype=CL:0002139!2.50e-44!24;CL:0000115!7.66e-39!35;CL:0005020!4.19e-35!6;CL:0002138!4.19e-35!6;CL:0005022!4.19e-35!6;CL:0002078!3.50e-30!44;CL:0000213!1.52e-25!57;CL:0000215!1.52e-25!57;CL:0000071!4.03e-19!18;CL:0002546!4.03e-19!18;CL:0002144!1.94e-18!3;CL:0002618!4.94e-17!3;CL:0000222!1.04e-11!119;CL:0002543!8.95e-09!6 | ||
|ontology_enrichment_celltype_v019=CL:0002138;1.45e-98;6!CL:0002139;1.10e-67;24!CL:0000115;1.74e-51;36!CL:0002144;5.17e-50;3!CL:0002078;7.28e-39;45!CL:0000213;1.40e-22;58!CL:0000215;1.40e-22;58!CL:0000071;5.59e-15;18!CL:0002262;1.12e-09;2!CL:1000398;1.12e-09;2!CL:0002545;1.94e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,1.86e-98,6;CL:0002138,1.86e-98,6;CL:0005022,1.86e-98,6;CL:0002139,1.10e-67,24;CL:0000115,7.40e-65,36;CL:0002078,8.86e-52,45;CL:0002144,4.38e-50,3;CL:0000213,4.85e-40,58;CL:0000215,4.85e-40,58;CL:0000222,8.13e-19,121;CL:0000071,5.29e-15,18;CL:0002546,5.29e-15,18;CL:0002262,1.12e-09,2;CL:1000398,1.12e-09,2;CL:0002545,1.86e-09,2;CL:0002321,1.50e-08,250;CL:0000066,1.64e-08,253 | |||
|ontology_enrichment_development_v019=CL:0005022;1.45e-98;6!CL:0002546;5.59e-15;18!CL:0000222;2.61e-09;121 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002465!5.14e-28!10;UBERON:0001473!3.35e-26!8;UBERON:0004536!3.35e-26!8;UBERON:0006558!3.35e-26!8;UBERON:0001986!4.03e-19!18;UBERON:0004638!4.03e-19!18;UBERON:0004852!4.03e-19!18;UBERON:0001915!1.94e-18!3;UBERON:0001982!1.94e-18!3;UBERON:0000055!5.24e-18!69;UBERON:0000487!2.00e-15!22;UBERON:0002049!2.74e-15!79;UBERON:0007798!2.74e-15!79;UBERON:0006914!1.99e-13!25;UBERON:0004535!5.33e-13!110;UBERON:0001009!1.50e-12!113;UBERON:0002066!1.96e-10!5;UBERON:0001638!4.83e-10!9;UBERON:0003920!4.83e-10!9;UBERON:0004582!4.83e-10!9;UBERON:0001981!9.75e-08!60;UBERON:0007500!9.75e-08!60;UBERON:0004537!9.75e-08!60;UBERON:0006965!9.75e-08!60;UBERON:0003914!1.23e-07!118;UBERON:0004111!1.50e-07!241;UBERON:0004872!2.30e-07!84;UBERON:0000477!4.14e-07!286;UBERON:0000029!5.37e-07!1;UBERON:0001301!9.51e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;5.57e-74;8!UBERON:0004536;5.57e-74;8!UBERON:0006558;5.57e-74;8!UBERON:0002465;3.22e-59;10!UBERON:0010523;5.17e-50;3!UBERON:0001915;5.17e-50;3!UBERON:0001982;5.17e-50;3!UBERON:0002405;6.00e-22;27!UBERON:0000055;1.04e-20;65!UBERON:0004638;5.59e-15;18!UBERON:0001986;5.59e-15;18!UBERON:0004852;5.59e-15;18!UBERON:0002049;2.09e-14;75!UBERON:0007798;2.09e-14;75!UBERON:0002193;2.28e-12;42!UBERON:0000487;2.55e-12;22!UBERON:0006914;7.02e-11;25!UBERON:0001281;1.12e-09;2!UBERON:0003497;1.12e-09;2!UBERON:0003909;1.12e-09;2!UBERON:0003835;1.12e-09;2!UBERON:0005800;1.94e-09;2!UBERON:0001515;1.94e-09;2!UBERON:0004535;9.55e-08;109!UBERON:0000490;2.53e-07;33!UBERON:0001280;7.28e-07;3!UBERON:0004647;7.28e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,6.73e-74,8;UBERON:0004536,6.73e-74,8;UBERON:0006558,6.73e-74,8;UBERON:0002465,3.74e-59,10;UBERON:0010523,4.38e-50,3;UBERON:0001915,4.38e-50,3;UBERON:0001982,4.38e-50,3;UBERON:0000055,1.47e-28,68;UBERON:0002049,8.28e-25,78;UBERON:0007798,8.28e-25,78;UBERON:0004535,1.55e-17,109;UBERON:0001009,4.81e-17,112;UBERON:0004638,5.29e-15,18;UBERON:0001986,5.29e-15,18;UBERON:0004852,5.29e-15,18;UBERON:0000487,2.44e-12,22;UBERON:0006914,6.75e-11,25;UBERON:0001281,1.12e-09,2;UBERON:0003497,1.12e-09,2;UBERON:0003909,1.12e-09,2;UBERON:0003835,1.12e-09,2;UBERON:0005800,1.86e-09,2;UBERON:0001515,1.86e-09,2;UBERON:0004111,5.49e-09,240;UBERON:0007500,4.79e-07,59;UBERON:0001981,4.79e-07,59;UBERON:0004537,4.79e-07,59;UBERON:0006965,4.79e-07,59;UBERON:0001280,7.28e-07,3;UBERON:0004647,7.28e-07,3;UBERON:0005171,7.28e-07,3 | |||
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|short_description=p@chr17:28534912..28534942,- | |short_description=p@chr17:28534912..28534942,- | ||
}} | }} |
Latest revision as of 15:14, 25 July 2015
Short description: | p@chr17:28534912..28534942, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:28534912..28534942, - |
Coexpression cluster: | C514_Lymphatic_Endothelial_mycosis_appendix_heart_CD14_migratory |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 1.86e-98 | 6 |
endothelial cell of lymphatic vessel | 1.86e-98 | 6 |
vascular lymphangioblast | 1.86e-98 | 6 |
endothelial cell of vascular tree | 1.10e-67 | 24 |
endothelial cell | 7.40e-65 | 36 |
meso-epithelial cell | 8.86e-52 | 45 |
capillary endothelial cell | 4.38e-50 | 3 |
lining cell | 4.85e-40 | 58 |
barrier cell | 4.85e-40 | 58 |
mesodermal cell | 8.13e-19 | 121 |
blood vessel endothelial cell | 5.29e-15 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.29e-15 | 18 |
endothelial cell of sinusoid | 1.12e-09 | 2 |
endothelial cell of hepatic sinusoid | 1.12e-09 | 2 |
thoracic aorta endothelial cell | 1.86e-09 | 2 |
embryonic cell | 1.50e-08 | 250 |
epithelial cell | 1.64e-08 | 253 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 6.73e-74 | 8 |
lymph vasculature | 6.73e-74 | 8 |
lymphatic part of lymphoid system | 6.73e-74 | 8 |
lymphoid system | 3.74e-59 | 10 |
microcirculatory vessel | 4.38e-50 | 3 |
endothelium of capillary | 4.38e-50 | 3 |
capillary | 4.38e-50 | 3 |
vessel | 1.47e-28 | 68 |
vasculature | 8.28e-25 | 78 |
vascular system | 8.28e-25 | 78 |
cardiovascular system | 1.55e-17 | 109 |
circulatory system | 4.81e-17 | 112 |
blood vessel endothelium | 5.29e-15 | 18 |
endothelium | 5.29e-15 | 18 |
cardiovascular system endothelium | 5.29e-15 | 18 |
simple squamous epithelium | 2.44e-12 | 22 |
squamous epithelium | 6.75e-11 | 25 |
hepatic sinusoid | 1.12e-09 | 2 |
abdomen blood vessel | 1.12e-09 | 2 |
sinusoid | 1.12e-09 | 2 |
abdominal segment blood vessel | 1.12e-09 | 2 |
segment of aorta | 1.86e-09 | 2 |
thoracic aorta | 1.86e-09 | 2 |
anatomical conduit | 5.49e-09 | 240 |
epithelial tube open at both ends | 4.79e-07 | 59 |
blood vessel | 4.79e-07 | 59 |
blood vasculature | 4.79e-07 | 59 |
vascular cord | 4.79e-07 | 59 |
liver parenchyma | 7.28e-07 | 3 |
liver lobule | 7.28e-07 | 3 |
hepatic duct | 7.28e-07 | 3 |