FFCP PHASE1:Hg19::chr17:79989976..79990030,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:79989976..79990030,+ to FFCP PHASE1:Hg19::chr17:79989976..79990030,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:79989976..79990030,+ | |||
|coexpression_cluster_id=C3701 | |||
|description=CAGE_peak_at_chr17:79989976..79990030,+ | |||
|id=chr17:79989976..79990030,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.27e-29!254;CL:0002321!8.55e-18!248;CL:0000220!6.52e-17!246;CL:0002076!5.51e-11!43;CL:0000221!6.09e-09!71;CL:0000548!1.84e-08!679;CL:0000004!1.84e-08!679;CL:0000255!1.84e-08!679;CL:0000012!2.10e-08!682;CL:0000223!2.15e-08!59;CL:0002368!2.49e-07!13;CL:1000497!5.85e-07!18;CL:0002518!5.85e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000497;5.41e-09;17!CL:0002518;5.41e-09;17!CL:0002076;1.24e-08;42!CL:1000449;1.81e-08;15!CL:0002368;2.59e-08;13!CL:0002159;1.31e-07;14!CL:0002681;6.64e-07;12!CL:0002584;6.64e-07;12!CL:0002202;9.65e-07;9!CL:0002632;9.65e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.86e-24,253;CL:0002321,1.71e-10,250;CL:0002076,1.87e-10,42;CL:0000221,1.27e-09,72;CL:1000497,7.43e-09,17;CL:0002518,7.43e-09,17;CL:0002368,2.03e-08,13;CL:1000449,3.48e-08,15;CL:0002159,8.88e-08,14;CL:0002077,3.01e-07,34 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!8.87e-09!106;DOID:0050687!2.31e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:3095;7.02e-07;22!DOID:2994;7.02e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,1.84e-07,143;DOID:305,5.30e-07,106;DOID:3095,9.60e-07,22;DOID:2994,9.60e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0006554!3.23e-11!44;UBERON:0001008!1.52e-10!45;UBERON:0005177!3.71e-10!107;UBERON:0002113!1.20e-09!27;UBERON:0003918!1.20e-09!27;UBERON:0005095!1.20e-09!27;UBERON:0007687!1.20e-09!27;UBERON:0000464!3.34e-09!104;UBERON:0003104!9.77e-09!238;UBERON:0009142!9.77e-09!238;UBERON:0000466!2.99e-08!126;UBERON:0000119!3.58e-08!312;UBERON:0000489!5.79e-08!32;UBERON:0000483!7.36e-08!309;UBERON:0002100!1.65e-07!216;UBERON:0000481!1.76e-07!347;UBERON:0009569!2.51e-07!113;UBERON:0005178!3.89e-07!34;UBERON:0002224!3.89e-07!34;UBERON:0000080!4.29e-07!18;UBERON:0002120!4.29e-07!18;UBERON:0004875!4.29e-07!18;UBERON:0005721!4.29e-07!18;UBERON:0005754!4.29e-07!18;UBERON:0007297!4.29e-07!18;UBERON:0005085!5.48e-07!29;UBERON:0006555!6.45e-07!17;UBERON:0005103!6.45e-07!17;UBERON:0000083!6.45e-07!17;UBERON:0009201!6.45e-07!17;UBERON:0004819!6.45e-07!17;UBERON:0006553!6.45e-07!17;UBERON:0003074!6.45e-07!17;UBERON:0003060!6.45e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.61e-12;30!UBERON:0001008;1.61e-12;30!UBERON:0002113;1.46e-10;24!UBERON:0011143;1.46e-10;24!UBERON:0006555;1.81e-08;15!UBERON:0004819;1.81e-08;15!UBERON:0001285;1.81e-08;15!UBERON:0007684;1.81e-08;15!UBERON:0000489;3.14e-08;29!UBERON:0001225;6.64e-07;12!UBERON:0008987;6.64e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,1.10e-12,47;UBERON:0001008,3.68e-12,48;UBERON:0002113,2.03e-11,26;UBERON:0003918,2.03e-11,26;UBERON:0011143,2.03e-11,26;UBERON:0005095,2.03e-11,26;UBERON:0007687,2.03e-11,26;UBERON:0000489,4.31e-09,31;UBERON:0006555,8.21e-09,16;UBERON:0004819,8.21e-09,16;UBERON:0004211,3.48e-08,15;UBERON:0009773,3.48e-08,15;UBERON:0001231,3.48e-08,15;UBERON:0001285,3.48e-08,15;UBERON:0007684,3.48e-08,15;UBERON:0004208,3.48e-08,15;UBERON:0005085,1.08e-07,31 | |||
|phase1_expression=0,0,0.140954404095971,0,0.893922188854576,0,0,0,0,6.14334841253772,48.1482805900975,6.77168253603534,8.17677632508206,0.866364470720326,0.994192127183747,0.672325146451775,0,0,0,6.52541607806976,7.14002419354885,3.76145665773705,1.71741592278634,4.65373045247806,2.76193807108566,0.305653622991805,0.246301768349837,0.157421562627358,0,0,0.154816123316076,16.5495820406207,20.1807965581428,7.02532619316897,0,0,1.46800219667424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.526768169550154,0,0,0,0,0,0.473447805734733,0,0.222820913770347,0,0,0,0.128091319725675,0.260118695119756,0.164437904603676,0,0.579606171470105,0,0,0,0.113309342697566,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.639312809217652,0,0,0.144846518960824,0.795285947051099,0,2.26883561193763,5.09977614163897,2.45937399940753,1.17881167947941,10.5645633604837,11.8651021691017,0.324547393654683,0,0,0,0,0,0.993812036833525,0.860234595106124,0.694281003215189,0.56530794192401,0.838998872419812,1.92582629358047,0.835979866147242,1.29208379584664,0,0,0.805658634218294,0.760272105718513,1.95249646038536,0.735326160691737,0.81014194788176,0.982297011124877,1.12264686313085,0.788280363383256,3.06633274931766,1.89853131913626,1.83201743930407,0,0,19.624232346414,0,0.25326102332916,0,0,0,0,4.2699598291882,1.2333377420858,0.933633106199299,1.0776853765575,0.817309515567294,1.36221684880438,1.15235184896,2.34321431833797,2.49728061464256,2.85235910772225,1.34503812496621,2.81842796745036,3.23745888736263,2.38766371393822,1.83738754129404,1.71968044236475,0.619954687054593,0,0.247266929278557,0.910161361938026,1.43723628363248,0.841680569770331,1.62654075833553,0,0,0,0,1.58805056424029,0,0,0,0,0,0.257640540045629,0.37223371266318,0,0.0974370051611986,0,0.276149695926898,0.161646056818812,0,0,0.169560592310488,0.966304265816484,2.18196896472668,1.43402297694502,28.1759261159365,28.2288406524764,27.6541584029454,13.3722760969828,34.0633148682098,54.0166491432228,1.56449532329816,0.643240938192885,0,0,2.88751792667834,0,0,0,0.110293972732394,0.217879444092406,0.237270619111097,0,0.392442930250692,0,0.738155454624648,1.40241773803446,4.9388881359768,8.82052268313252,0,0,0,0,11.4379247845096,4.97546649865724,9.32877425973317,4.49607013030478,2.6137532827024,13.4253245479868,1.62904152655162,5.19967392639789,4.3299402607582,0.579652024875384,3.40485213283883,0.721832238805369,0.925971025153221,0.951270761172991,0,2.57545848628462,0,0.234004265139238,0.148631162288728,1.87467667973554,1.51183915378974,3.1190521393325,2.05984602216551,2.03443756959773,6.51750554580859,0,0,0,0,0.25248486685276,0.952468414382536,0,0,0,1.85089486865982,2.10240140490742,0.571652865261156,1.23344192779897,1.74384027533312,0.7333828582095,0.904902010304444,0,0.845302752556,0.26593811658487,1.04007436911366,4.37252536245642,5.67396528093113,3.72991050622539,1.14382394926518,5.96883765930587,7.40916303102692,1.30294473717494,0.710783897485092,7.12756685640086,0.904318131178758,0.871533458600294,0.599837947092342,0,0,0,0.958499421966331,0,0,0.723906533337896,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0.637938751653163,0,0,0,0.24538298343828,3.00102312635806,2.17012018959788,0.415941723061614,0.535286966391485,0.315404830067869,0.117141414992713,0,2.27407504055985,1.03473071292505,0,0.921845842708516,0.260650843404249,1.17480694477644,0.686286847621712,0,0,0,1.21251028578504,4.99306318531491,1.5119514666484,0,0.153461973288062,0,0,0,0.160853921143607,1.48418066444991,0,0,0.492762936082855,0,0.116210378459959,22.1172792752669,3.60911646545913,2.85451065701279,0.114814448164607,0,0.262248829918848,1.35359883872224,1.15523005656622,17.2556949218908,5.84556898613043,1.58327443339314,1.13733384070897,1.36074964221213,3.02282282542995,4.62681758070868,4.87703587578935,2.50844886927427,4.33289664176565,6.64860807142979,7.38786690583188,0,0,2.56450125116389,1.64007322849853,3.57916234130733,1.44257416306811,0.457847324091717,0.660075999364704,5.16838984196555,7.80072295243825,0,0.290012154876366,4.92955574766862,2.91656981979646,0.964856007391714,2.14840489736547,3.0453505721988,2.04543905798642,0.623224249527161,5.12383237619032,1.92190067365106,3.44554323735377,2.6301023022443,0.929691098594572,0.94443704049192,0,0.308033580176089,0.532306030317022,0,0.74129687641568,0.429374660225974,2.60510858551767,0.316379424718726,1.14378116354295,2.55897791311334,0.855877976067841,0.636406495851874,0,1.79872457583315,2.47083326762449,1.53156123049392,2.02182481573316,0,0.421258456238981,5.85160486907508,0,0,0.409499734223957,0.848432591722276,0,0.551365343546124,0,0.438450885253763,5.20897980840019,1.31178950409327,0.405820753925408,1.54911749049875,1.12678241012897,3.44187245289724,3.83171259951173,1.78335525740625,0,0,0,8.72788299661145,5.59895552391973,10.6806545125318,18.768463715002,9.80018863751903,1.12972560932135,7.31859133541091,3.36942951335251,11.08575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|phase1_expression=0,0,0.140954404095971,0,0.893922188854576,0,0,0,0,6.14334841253772,48.1482805900975,6.77168253603534,8.17677632508206,0.866364470720326,0.994192127183747,0.672325146451775,0,0,0,6.52541607806976,7.14002419354885,3.76145665773705,1.71741592278634,4.65373045247806,2.76193807108566,0.305653622991805,0.246301768349837,0.157421562627358,0,0,0.154816123316076,16.5495820406207,20.1807965581428,7.02532619316897,0,0,1.46800219667424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.526768169550154,0,0,0,0,0,0.473447805734733,0,0.222820913770347,0,0,0,0.128091319725675,0.260118695119756,0.164437904603676,0,0.579606171470105,0,0,0,0.113309342697566,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.639312809217652,0,0,0.144846518960824,0.795285947051099,0,2.26883561193763,5.09977614163897,2.45937399940753,1.17881167947941,10.5645633604837,11.8651021691017,0.324547393654683,0,0,0,0,0,0.993812036833525,0.860234595106124,0.694281003215189,0.56530794192401,0.838998872419812,1.92582629358047,0.835979866147242,1.29208379584664,0,0,0.805658634218294,0.760272105718513,1.95249646038536,0.735326160691737,0.81014194788176,0.982297011124877,1.12264686313085,0.788280363383256,3.06633274931766,1.89853131913626,1.83201743930407,0,0,19.624232346414,0,0.25326102332916,0,0,0,0,4.2699598291882,1.2333377420858,0.933633106199299,1.0776853765575,0.817309515567294,1.36221684880438,1.15235184896,2.34321431833797,2.49728061464256,2.85235910772225,1.34503812496621,2.81842796745036,3.23745888736263,2.38766371393822,1.83738754129404,1.71968044236475,0.619954687054593,0,0.247266929278557,0.910161361938026,1.43723628363248,0.841680569770331,1.62654075833553,0,0,0,0,1.58805056424029,0,0,0,0,0,0.257640540045629,0.37223371266318,0,0.0974370051611986,0,0.276149695926898,0.161646056818812,0,0,0.169560592310488,0.966304265816484,2.18196896472668,1.43402297694502,28.1759261159365,28.2288406524764,27.6541584029454,13.3722760969828,34.0633148682098,54.0166491432228,1.56449532329816,0.643240938192885,0,0,2.88751792667834,0,0,0,0.110293972732394,0.217879444092406,0.237270619111097,0,0.392442930250692,0,0.738155454624648,1.40241773803446,4.9388881359768,8.82052268313252,0,0,0,0,11.4379247845096,4.97546649865724,9.32877425973317,4.49607013030478,2.6137532827024,13.4253245479868,1.62904152655162,5.19967392639789,4.3299402607582,0.579652024875384,3.40485213283883,0.721832238805369,0.925971025153221,0.951270761172991,0,2.57545848628462,0,0.234004265139238,0.148631162288728,1.87467667973554,1.51183915378974,3.1190521393325,2.05984602216551,2.03443756959773,6.51750554580859,0,0,0,0,0.25248486685276,0.952468414382536,0,0,0,1.85089486865982,2.10240140490742,0.571652865261156,1.23344192779897,1.74384027533312,0.7333828582095,0.904902010304444,0,0.845302752556,0.26593811658487,1.04007436911366,4.37252536245642,5.67396528093113,3.72991050622539,1.14382394926518,5.96883765930587,7.40916303102692,1.30294473717494,0.710783897485092,7.12756685640086,0.904318131178758,0.871533458600294,0.599837947092342,0,0,0,0.958499421966331,0,0,0.723906533337896,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0.637938751653163,0,0,0,0.24538298343828,3.00102312635806,2.17012018959788,0.415941723061614,0.535286966391485,0.315404830067869,0.117141414992713,0,2.27407504055985,1.03473071292505,0,0.921845842708516,0.260650843404249,1.17480694477644,0.686286847621712,0,0,0,1.21251028578504,4.99306318531491,1.5119514666484,0,0.153461973288062,0,0,0,0.160853921143607,1.48418066444991,0,0,0.492762936082855,0,0.116210378459959,22.1172792752669,3.60911646545913,2.85451065701279,0.114814448164607,0,0.262248829918848,1.35359883872224,1.15523005656622,17.2556949218908,5.84556898613043,1.58327443339314,1.13733384070897,1.36074964221213,3.02282282542995,4.62681758070868,4.87703587578935,2.50844886927427,4.33289664176565,6.64860807142979,7.38786690583188,0,0,2.56450125116389,1.64007322849853,3.57916234130733,1.44257416306811,0.457847324091717,0.660075999364704,5.16838984196555,7.80072295243825,0,0.290012154876366,4.92955574766862,2.91656981979646,0.964856007391714,2.14840489736547,3.0453505721988,2.04543905798642,0.623224249527161,5.12383237619032,1.92190067365106,3.44554323735377,2.6301023022443,0.929691098594572,0.94443704049192,0,0.308033580176089,0.532306030317022,0,0.74129687641568,0.429374660225974,2.60510858551767,0.316379424718726,1.14378116354295,2.55897791311334,0.855877976067841,0.636406495851874,0,1.79872457583315,2.47083326762449,1.53156123049392,2.02182481573316,0,0.421258456238981,5.85160486907508,0,0,0.409499734223957,0.848432591722276,0,0.551365343546124,0,0.438450885253763,5.20897980840019,1.31178950409327,0.405820753925408,1.54911749049875,1.12678241012897,3.44187245289724,3.83171259951173,1.78335525740625,0,0,0,8.72788299661145,5.59895552391973,10.6806545125318,18.768463715002,9.80018863751903,1.12972560932135,7.31859133541091,3.36942951335251,11.08575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| ||
|short_description=p@chr17:79989976..79990030,+ | |||
}} | }} |
Latest revision as of 22:58, 25 July 2015
Short description: | p@chr17:79989976..79990030, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:79989976..79990030, + |
Coexpression cluster: | C3701_iPS_oral_HES3GFP_Alveolar_leiomyoblastoma_rhabdomyosarcoma_testicular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.86e-24 | 253 |
embryonic cell | 1.71e-10 | 250 |
endo-epithelial cell | 1.87e-10 | 42 |
ectodermal cell | 1.27e-09 | 72 |
kidney cell | 7.43e-09 | 17 |
kidney epithelial cell | 7.43e-09 | 17 |
respiratory epithelial cell | 2.03e-08 | 13 |
epithelial cell of nephron | 3.48e-08 | 15 |
general ecto-epithelial cell | 8.88e-08 | 14 |
ecto-epithelial cell | 3.01e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
urinary system structure | 1.10e-12 | 47 |
renal system | 3.68e-12 | 48 |
kidney | 2.03e-11 | 26 |
kidney mesenchyme | 2.03e-11 | 26 |
upper urinary tract | 2.03e-11 | 26 |
kidney rudiment | 2.03e-11 | 26 |
kidney field | 2.03e-11 | 26 |
cavitated compound organ | 4.31e-09 | 31 |
excretory tube | 8.21e-09 | 16 |
kidney epithelium | 8.21e-09 | 16 |
nephron epithelium | 3.48e-08 | 15 |
renal tubule | 3.48e-08 | 15 |
nephron tubule | 3.48e-08 | 15 |
nephron | 3.48e-08 | 15 |
uriniferous tubule | 3.48e-08 | 15 |
nephrogenic mesenchyme | 3.48e-08 | 15 |
ectodermal placode | 1.08e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 1.84e-07 | 143 |
carcinoma | 5.30e-07 | 106 |
germ cell and embryonal cancer | 9.60e-07 | 22 |
germ cell cancer | 9.60e-07 | 22 |