FFCP PHASE1:Hg19::chr19:49714044..49714055,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:49714044..49714055,+ to FFCP PHASE1:Hg19::chr19:49714044..49714055,+: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:49714044..49714055,+ | |||
|coexpression_cluster_id=C90 | |||
|description=CAGE_peak_at_chr19:49714044..49714055,+ | |||
|id=chr19:49714044..49714055,+ | |||
|ontology_enrichment_celltype=CL:0002322!2.26e-20!5;CL:0000148!1.33e-19!10;CL:0000541!1.33e-19!10;CL:0000147!6.83e-18!14;CL:0000710!5.55e-12!20;CL:0000990!2.35e-11!8;CL:0000039!1.48e-09!7;CL:0000586!1.48e-09!7;CL:0000451!3.08e-09!10;CL:0000075!1.52e-08!27;CL:0000133!1.95e-07!59;CL:0002077!9.17e-07!33;CL:0000840!9.88e-07!5;CL:0001029!9.88e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000333;4.64e-17;5!CL:0000322;6.56e-08;3!CL:0000182;1.79e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,6.78e-08,3;CL:0000182,1.73e-07,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!7.30e-18!22;DOID:2994!7.30e-18!22;DOID:171!7.64e-16!10 | |||
|ontology_enrichment_disease_v019=DOID:171;3.45e-71;10!DOID:3095;1.77e-32;22!DOID:2994;1.77e-32;22!DOID:169;2.18e-14;6!DOID:3193;2.47e-11;2!DOID:962;2.47e-11;2!DOID:3910;3.18e-11;2!DOID:1192;5.54e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.90e-71,10;DOID:3095,1.87e-32,22;DOID:2994,1.87e-32,22;DOID:169,2.18e-14,6;DOID:3193,2.47e-11,2;DOID:962,2.47e-11,2;DOID:3910,3.35e-11,2;DOID:1192,5.54e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0000473!3.24e-08!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;3.18e-79;4!UBERON:0000923;3.18e-79;4!UBERON:0010316;3.18e-79;4!UBERON:0005291;3.18e-79;4!UBERON:0002050;1.57e-63;5!UBERON:0005423;1.57e-63;5!UBERON:0000013;4.64e-17;5!UBERON:0002410;4.64e-17;5!UBERON:0003714;2.47e-11;2!UBERON:0004903;3.18e-11;2!UBERON:0002173;3.18e-11;2!UBERON:0002186;3.18e-11;2!UBERON:0000010;6.48e-10;8!UBERON:0004821;6.56e-08;3!UBERON:0007499;6.56e-08;3!UBERON:0003215;6.56e-08;3!UBERON:0010368;6.56e-08;3!UBERON:0009911;6.56e-08;3!UBERON:0002299;6.56e-08;3!UBERON:0006524;6.56e-08;3!UBERON:0008874;6.56e-08;3!UBERON:0002169;6.56e-08;3!UBERON:0004894;6.56e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,4.64e-17,5;UBERON:0002410,4.64e-17,5;UBERON:0003714,2.47e-11,2;UBERON:0004903,3.35e-11,2;UBERON:0002173,3.35e-11,2;UBERON:0002186,3.35e-11,2;UBERON:0000010,6.48e-10,8;UBERON:0004821,6.78e-08,3;UBERON:0003215,6.78e-08,3;UBERON:0010368,6.78e-08,3;UBERON:0009911,6.78e-08,3;UBERON:0002299,6.78e-08,3;UBERON:0006524,6.78e-08,3;UBERON:0008874,6.78e-08,3;UBERON:0002169,6.78e-08,3;UBERON:0004894,6.78e-08,3;UBERON:0007499,1.04e-07,25;UBERON:0009856,1.95e-07,26 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0.324547393654683,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.464775771478074,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565443335525,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190493682876507,0.381988425558278,0,0,0.102827492703324,0,0.571652865261156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03402920234213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0.19606253431774,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.412618309791701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879313402068495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,17.9283173715722,0,4.58277830875868,14.0299447267111,10.4106041977562,6.14509409770568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34454203369928,0,0,0,0,0,0,0,0,0,0,1.05522746615772,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305966489225945,0,0.0918948995348449,0.250707539292375,0.0757786982182394,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0.324547393654683,0.174129737299267,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0.132529768321485,0.464775771478074,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565443335525,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190493682876507,0.381988425558278,0,0,0.102827492703324,0,0.571652865261156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.03402920234213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179515288819544,0,0,0,0,0,0,0,0,0.19606253431774,0,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321506296930038,0.412618309791701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.879313402068495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,0.132864840313363,0,0,0,0,0,0,0,0,0,0,0,0,0,17.9283173715722,0,4.58277830875868,14.0299447267111,10.4106041977562,6.14509409770568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34454203369928,0,0,0,0,0,0,0,0,0,0,1.05522746615772,0,0,0,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305966489225945,0,0.0918948995348449,0.250707539292375,0.0757786982182394,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:49714044..49714055,+ | |||
}} | }} |
Latest revision as of 16:02, 27 July 2015
Short description: | p@chr19:49714044..49714055, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:49714044..49714055, + |
Coexpression cluster: | C90_neuroectodermal_peripheral_neuroepithelioma_neuroblastoma_carcinoid_parietal_putamen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 6.78e-08 | 3 |
hepatocyte | 1.73e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 4.64e-17 | 5 |
autonomic nervous system | 4.64e-17 | 5 |
neural tissue | 2.47e-11 | 2 |
bronchoalveolar duct junction | 3.35e-11 | 2 |
alveolar duct | 3.35e-11 | 2 |
bronchiole | 3.35e-11 | 2 |
peripheral nervous system | 6.48e-10 | 8 |
pulmonary alveolus epithelium | 6.78e-08 | 3 |
alveolus | 6.78e-08 | 3 |
pulmonary lobule | 6.78e-08 | 3 |
lobule | 6.78e-08 | 3 |
alveolus of lung | 6.78e-08 | 3 |
alveolar system | 6.78e-08 | 3 |
pulmonary acinus | 6.78e-08 | 3 |
alveolar sac | 6.78e-08 | 3 |
alveolar wall | 6.78e-08 | 3 |
epithelial sac | 1.04e-07 | 25 |
sac | 1.95e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.90e-71 | 10 |
germ cell and embryonal cancer | 1.87e-32 | 22 |
germ cell cancer | 1.87e-32 | 22 |
neuroendocrine tumor | 2.18e-14 | 6 |
peripheral nerve sheath neoplasm | 2.47e-11 | 2 |
neurofibroma | 2.47e-11 | 2 |
lung adenocarcinoma | 3.35e-11 | 2 |
peripheral nervous system neoplasm | 5.54e-08 | 3 |