FFCP PHASE1:Hg19::chr21:39628885..39628905,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=3772 | |EntrezGene=entrezgene:3772 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC=6261 | |HGNC=HGNC:6261 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt=Q99712 | |UniProt=uniprot:Q99712 | ||
|association_with_transcript=15bp_to_ENST00000398938,NM_170736,uc002yww.2_5end | |association_with_transcript=15bp_to_ENST00000398938,NM_170736,uc002yww.2_5end | ||
|cluster_id=chr21:39628885..39628905,+ | |||
|coexpression_cluster_id=C1487 | |coexpression_cluster_id=C1487 | ||
|description=CAGE_peak_13_at_KCNJ15_5end | |description=CAGE_peak_13_at_KCNJ15_5end | ||
Revision as of 17:49, 28 July 2015
| Short description: | p13@KCNJ15 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_13_at_KCNJ15_5end |
| Coexpression cluster: | C1487_Renal_lung_kidney_ductus_seminal_Skeletal_Urothelial |
| Association with transcript: | 15bp_to_ENST00000398938, NM_170736, uc002yww.2_5end |
| EntrezGene: | 3772 |
| HGNC: | 6261 |
| UniProt: | Q99712 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p13@KCNJ15 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| transitional epithelial cell | 4.22e-16 | 4 |
| urothelial cell | 4.22e-16 | 4 |
| kidney tubule cell | 2.96e-11 | 10 |
| nephron tubule epithelial cell | 2.96e-11 | 10 |
| osteoblast | 1.81e-10 | 11 |
| osteoprogenitor cell | 1.81e-10 | 11 |
| mesenchyme condensation cell | 1.81e-10 | 11 |
| bladder cell | 4.41e-08 | 1 |
| lower urinary tract cell | 4.41e-08 | 1 |
| cell of skeletal muscle | 1.17e-07 | 9 |
Showing 1 to 10 of 11 entries
| Ontology term | p-value | n |
|---|---|---|
| urothelium | 3.89e-22 | 5 |
| transitional epithelium | 1.72e-18 | 6 |
| urinary system structure | 6.75e-16 | 47 |
| renal system | 1.59e-15 | 48 |
| cavitated compound organ | 2.77e-13 | 31 |
| kidney | 2.07e-12 | 26 |
| kidney mesenchyme | 2.07e-12 | 26 |
| upper urinary tract | 2.07e-12 | 26 |
| kidney rudiment | 2.07e-12 | 26 |
| kidney field | 2.07e-12 | 26 |
Showing 1 to 10 of 40 entries
| Ontology term | p-value | n |
|---|---|---|
| organ system benign neoplasm | 2.02e-08 | 1 |
| skin benign neoplasm | 2.02e-08 | 1 |
| integumentary system benign neoplasm | 2.02e-08 | 1 |
| dermis tumor | 2.02e-08 | 1 |
| cutaneous fibrous histiocytoma | 2.02e-08 | 1 |
Showing 1 to 5 of 5 entries
