FFCP PHASE1:Hg19::chr2:211466992..211467008,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:211466992..211467008,+ | |||
|coexpression_cluster_id=C768 | |coexpression_cluster_id=C768 | ||
|description=CAGE_peak_at_chr2:211466992..211467008,+ | |description=CAGE_peak_at_chr2:211466992..211467008,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002150!2.80e-11!3;CL:0000861!2.80e-11!3 | |ontology_enrichment_celltype=CL:0002150!2.80e-11!3;CL:0000861!2.80e-11!3 | ||
|ontology_enrichment_celltype_v019=CL:0000182;1.13e-07;12 | |ontology_enrichment_celltype_v019=CL:0000182;1.13e-07;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.03e-07,12;CL:0000066,3.89e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.31e-32;29 | |ontology_enrichment_development_v019=UBERON:0008947;8.31e-32;29 | ||
|ontology_enrichment_disease=DOID:305!7.52e-09!106;DOID:0050687!2.62e-08!143 | |ontology_enrichment_disease=DOID:305!7.52e-09!106;DOID:0050687!2.62e-08!143 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:305,2.99e-13,106;DOID:0050687,2.83e-09,143 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001737;1.49e-85;9!UBERON:0001557;1.49e-85;9!UBERON:0000072;1.65e-22;37!UBERON:0000065;1.50e-18;44!UBERON:0002107;2.59e-12;19!UBERON:0006925;2.59e-12;19!UBERON:0002423;2.50e-09;25!UBERON:0001004;2.38e-08;65!UBERON:0002365;1.70e-07;31!UBERON:0002330;1.70e-07;31 | |ontology_enrichment_uberon_v019=UBERON:0001737;1.49e-85;9!UBERON:0001557;1.49e-85;9!UBERON:0000072;1.65e-22;37!UBERON:0000065;1.50e-18;44!UBERON:0002107;2.59e-12;19!UBERON:0006925;2.59e-12;19!UBERON:0002423;2.50e-09;25!UBERON:0001004;2.38e-08;65!UBERON:0002365;1.70e-07;31!UBERON:0002330;1.70e-07;31 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,9.66e-86,9;UBERON:0001557,4.47e-40,19;UBERON:0008947,5.46e-24,38;UBERON:0003258,5.46e-24,38;UBERON:0001041,2.04e-22,87;UBERON:0000072,4.01e-19,47;UBERON:0004921,4.52e-18,118;UBERON:0000065,1.86e-16,54;UBERON:0001007,2.94e-14,145;UBERON:0001555,2.94e-14,145;UBERON:0007026,2.94e-14,145;UBERON:0004119,1.09e-12,160;UBERON:0000925,1.09e-12,160;UBERON:0006595,1.09e-12,160;UBERON:0002107,2.38e-12,19;UBERON:0006925,2.38e-12,19;UBERON:0008836,2.38e-12,19;UBERON:0001004,1.30e-11,74;UBERON:0001048,4.35e-11,160;UBERON:0008835,1.19e-10,22;UBERON:0003894,1.19e-10,22;UBERON:0009854,3.50e-10,23;UBERON:0011216,1.73e-09,223;UBERON:0007499,2.34e-09,25;UBERON:0009497,2.34e-09,25;UBERON:0000015,2.34e-09,25;UBERON:0002423,2.34e-09,25;UBERON:0006235,2.34e-09,25;UBERON:0004161,2.34e-09,25;UBERON:0009856,5.43e-09,26;UBERON:0002365,1.62e-07,31;UBERON:0002330,1.62e-07,31 | |||
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| ||
|short_description=p@chr2:211466992..211467008,+ | |short_description=p@chr2:211466992..211467008,+ | ||
}} | }} |
Latest revision as of 05:44, 29 July 2015
Short description: | p@chr2:211466992..211467008, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:211466992..211467008, + |
Coexpression cluster: | C768_Hepatocyte_liver_cervical_Hep2_epitheloid_large_nonsmall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.03e-07 | 12 |
epithelial cell | 3.89e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 9.66e-86 | 9 |
upper respiratory tract | 4.47e-40 | 19 |
respiratory primordium | 5.46e-24 | 38 |
endoderm of foregut | 5.46e-24 | 38 |
foregut | 2.04e-22 | 87 |
segment of respiratory tract | 4.01e-19 | 47 |
subdivision of digestive tract | 4.52e-18 | 118 |
respiratory tract | 1.86e-16 | 54 |
digestive system | 2.94e-14 | 145 |
digestive tract | 2.94e-14 | 145 |
primitive gut | 2.94e-14 | 145 |
endoderm-derived structure | 1.09e-12 | 160 |
endoderm | 1.09e-12 | 160 |
presumptive endoderm | 1.09e-12 | 160 |
liver | 2.38e-12 | 19 |
digestive gland | 2.38e-12 | 19 |
liver bud | 2.38e-12 | 19 |
respiratory system | 1.30e-11 | 74 |
primordium | 4.35e-11 | 160 |
hepatic diverticulum | 1.19e-10 | 22 |
liver primordium | 1.19e-10 | 22 |
digestive tract diverticulum | 3.50e-10 | 23 |
organ system subdivision | 1.73e-09 | 223 |
epithelial sac | 2.34e-09 | 25 |
epithelium of foregut-midgut junction | 2.34e-09 | 25 |
anatomical boundary | 2.34e-09 | 25 |
hepatobiliary system | 2.34e-09 | 25 |
foregut-midgut junction | 2.34e-09 | 25 |
septum transversum | 2.34e-09 | 25 |
sac | 5.43e-09 | 26 |
exocrine gland | 1.62e-07 | 31 |
exocrine system | 1.62e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.99e-13 | 106 |
cell type cancer | 2.83e-09 | 143 |