FFCP PHASE1:Hg19::chr2:216226715..216226720,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:216226715..216226720,- | |||
|coexpression_cluster_id=C79 | |||
|description=CAGE_peak_at_chr2:216226715..216226720,- | |description=CAGE_peak_at_chr2:216226715..216226720,- | ||
|id=chr2:216226715..216226720,- | |id=chr2:216226715..216226720,- | ||
|ontology_enrichment_celltype=CL:0000055!8.82e-17!180;CL:0000057!1.85e-13!75;CL:0002620!6.98e-12!23;CL:0000183!3.45e-09!59;CL:0000048!3.48e-09!430;CL:0000680!5.20e-09!57;CL:0000056!5.20e-09!57;CL:0000355!5.20e-09!57;CL:0000723!1.11e-08!436;CL:0000034!4.83e-08!444;CL:0002371!1.58e-07!591;CL:0000187!2.31e-07!54;CL:0000144!8.73e-07!625 | |ontology_enrichment_celltype=CL:0000055!8.82e-17!180;CL:0000057!1.85e-13!75;CL:0002620!6.98e-12!23;CL:0000183!3.45e-09!59;CL:0000048!3.48e-09!430;CL:0000680!5.20e-09!57;CL:0000056!5.20e-09!57;CL:0000355!5.20e-09!57;CL:0000723!1.11e-08!436;CL:0000034!4.83e-08!444;CL:0002371!1.58e-07!591;CL:0000187!2.31e-07!54;CL:0000144!8.73e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:0002541;3.26e-09;3!CL:0000511;1.80e-07;1!CL:0002625;1.80e-07;1!CL:0000216;1.80e-07;1!CL:0000228;5.44e-07;1!CL:0000222;5.44e-07;1!CL:0002372;5.44e-07;1!CL:1000306;9.19e-07;4!CL:0002547;9.19e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,3.27e-09,3;CL:0000511,1.86e-07,1;CL:0002625,1.86e-07,1;CL:0000216,1.86e-07,1;CL:0000228,4.06e-07,1;CL:0002372,4.06e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2513;5.44e-07;1!DOID:4235;5.44e-07;1!DOID:3571;5.44e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4235,2.67e-07,1;DOID:2513,3.60e-07,1;DOID:3571,3.82e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004290!3.39e-10!70;UBERON:0005256!1.16e-09!143;UBERON:0000914!2.00e-09!83;UBERON:0002329!2.00e-09!83;UBERON:0003077!2.00e-09!83;UBERON:0003059!2.00e-09!83;UBERON:0007282!2.00e-09!83;UBERON:0009618!2.00e-09!83;UBERON:0007285!2.00e-09!83;UBERON:0000486!8.26e-09!82;UBERON:0002199!1.26e-08!45;UBERON:0002416!1.26e-08!45;UBERON:0002097!1.48e-08!40;UBERON:0001134!6.16e-08!61;UBERON:0002036!6.16e-08!61;UBERON:0003082!6.16e-08!61;UBERON:0002385!1.85e-07!63;UBERON:0001015!1.85e-07!63;UBERON:0000383!1.85e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.17e-09;10!UBERON:0000158;1.17e-09;10!UBERON:0003124;3.26e-09;3!UBERON:0000920;3.26e-09;3!UBERON:0001136;1.80e-07;1!UBERON:0001343;1.80e-07;1!UBERON:0004910;1.80e-07;1!UBERON:0004813;1.80e-07;1!UBERON:0007195;2.22e-07;1!UBERON:0004797;9.19e-07;4!UBERON:0000415;9.19e-07;4!UBERON:0007240;9.19e-07;4!UBERON:0005742;9.19e-07;4!UBERON:0005734;9.19e-07;4!UBERON:0004664;9.19e-07;4!UBERON:0004663;9.19e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,3.27e-09,3;UBERON:0001136,1.86e-07,1;UBERON:0001343,1.86e-07,1;UBERON:0004910,1.86e-07,1;UBERON:0005154,1.86e-07,1;UBERON:0005295,1.86e-07,1;UBERON:0004813,1.86e-07,1;UBERON:0005297,1.86e-07,1;UBERON:0005294,1.86e-07,1;UBERON:0010141,1.86e-07,1;UBERON:0005891,1.86e-07,1;UBERON:0007195,2.23e-07,1;UBERON:0004871,5.28e-07,8;UBERON:0005631,7.23e-07,14;UBERON:0000158,7.23e-07,14 | |||
|phase1_expression=0,0.428201047781966,0.281908808191942,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0.144846518960824,3.9764297352555,14.5990461090791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0.33472061276467,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,1.05927344650575,2.29469296599051,0.354668382198357,0.560677600142307,2.1349799145941,0,0,0.404132016209064,0.326923806226917,1.21085942115945,0,0,0.312160076830321,0,0.149448680551801,0.117434498643765,0.161872944368132,0.280901613404497,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,1.05166641234618,0,0.538168907066586,0,0,0.600182192168805,0.309157587715317,0.257640540045629,0.18611685633159,0.843881661206331,0.292311015483596,0.757301322732344,0,0,1.06502877754984,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0.503946384596579,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.112131084345361,0,0,0.258543431515556,0,1.690605505112,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0,2.10833939483032,0,0,1.42636905040718,0.579125226670317,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.356857977594324,0,0.585707074963566,0,0,0,0.664225598535437,0,0,0,0.343143423810856,0,0,0,0,0,0,0.248107807818777,1.2276957863045,0.561320188866147,0.256278298511402,0,0.160853921143607,0,0.308419387605311,0.177561725313127,0,0,0.116210378459959,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0.170093705276516,0.431831832204279,0,0.270946437543853,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,3.21367859688319,0,1.23238893691716,0.460511024178389,0.413509717453592,0.107420244868274,0.145016693914229,0,0,0,0,0.638063562472921,0.50578890427775,0.464845549297286,0.62962469366128,0,0.308033580176089,0.532306030317022,0,0.55597265731176,0,0,0.632758849437452,0,0,0,0.318203247925937,1.56989728039846,0.179872457583315,0,0,1.01091240786658,0,0,0,0,0,0,0.141405431953713,0,0.551365343546124,0.66343897524122,0,0,1.31178950409327,0.202910376962704,0,0,0.143411352204052,0.0982490410131212,0.35667105148125,0,0.211107635297664,0.658589785919804,0.379473173765715,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0,1.22864280839693,0,0,0,0,0,0.19924798825107,0,0,0,0,1.55519793830904,0,0,0,0.0986434056369336,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.06102203490647,0.641183153813036,18.1231823846336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0.687481272035051,0,0,0,0,0,1.44119953416961,1.16495949527454,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537862017998534,0,0,0,0,0,0.864221491201268,0,0,0,0.681552087141687,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0.701139929541673,1.10961172300523,0.189403005275089,0.50313580350515,0,0.457680136793847,0.604923695052956,0,0,0.159296767163702,0.449803112163605,1.24210365501008,0.829412415681711,1.86089200190596,0,0.150257608997218,0,0.406870733204662,1.27294061441792,0,0,0,0,0,0.336749488765919,1.26184898228651,0.192619830407303,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567515953566836,0.184105950251841,0,0.622077260032973,0,0,0.157265941855896,0,0,0,0,0,2.86203915588077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.762764190934334,0,0,0,1.0085253435176,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.354809480650555,0,0.342976018874837,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0.414432328326074,0.17071847709395,1.38251932362818,0,0,0,0.423387050190929,0.68732060563215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86919826156599,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0.743990036333503,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.428201047781966,0.281908808191942,0,0,0.872338524100369,0,0,0,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0.50133791063589,0.144846518960824,3.9764297352555,14.5990461090791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0.33472061276467,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0,1.05927344650575,2.29469296599051,0.354668382198357,0.560677600142307,2.1349799145941,0,0,0.404132016209064,0.326923806226917,1.21085942115945,0,0,0.312160076830321,0,0.149448680551801,0.117434498643765,0.161872944368132,0.280901613404497,0,0,0,0,0,0.910161361938026,0,0,0,0,0,0,1.05166641234618,0,0.538168907066586,0,0,0.600182192168805,0.309157587715317,0.257640540045629,0.18611685633159,0.843881661206331,0.292311015483596,0.757301322732344,0,0,1.06502877754984,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,0,0,0.464367928031979,0.721879481669586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.234817388471643,0,0,0,0,0,0,0,0,0,0.503946384596579,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.205654985406647,0,0,0.112131084345361,0,0,0.258543431515556,0,1.690605505112,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0,0,0,2.10833939483032,0,0,1.42636905040718,0.579125226670317,0.205476322550383,0.358121926479791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.356857977594324,0,0.585707074963566,0,0,0,0.664225598535437,0,0,0,0.343143423810856,0,0,0,0,0,0,0.248107807818777,1.2276957863045,0.561320188866147,0.256278298511402,0,0.160853921143607,0,0.308419387605311,0.177561725313127,0,0,0.116210378459959,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0.170093705276516,0.431831832204279,0,0.270946437543853,0.501689773854853,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,0,0,3.21367859688319,0,1.23238893691716,0.460511024178389,0.413509717453592,0.107420244868274,0.145016693914229,0,0,0,0,0.638063562472921,0.50578890427775,0.464845549297286,0.62962469366128,0,0.308033580176089,0.532306030317022,0,0.55597265731176,0,0,0.632758849437452,0,0,0,0.318203247925937,1.56989728039846,0.179872457583315,0,0,1.01091240786658,0,0,0,0,0,0,0.141405431953713,0,0.551365343546124,0.66343897524122,0,0,1.31178950409327,0.202910376962704,0,0,0.143411352204052,0.0982490410131212,0.35667105148125,0,0.211107635297664,0.658589785919804,0.379473173765715,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19372242368845,0,1.22864280839693,0,0,0,0,0,0.19924798825107,0,0,0,0,1.55519793830904,0,0,0,0.0986434056369336,0,2.22273980289274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.06102203490647,0.641183153813036,18.1231823846336,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0.137041924646751,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0.279282401272254,0.687481272035051,0,0,0,0,0,1.44119953416961,1.16495949527454,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.537862017998534,0,0,0,0,0,0.864221491201268,0,0,0,0.681552087141687,0.113312091520126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151649117541648,0,0,0,0,0,0.701139929541673,1.10961172300523,0.189403005275089,0.50313580350515,0,0.457680136793847,0.604923695052956,0,0,0.159296767163702,0.449803112163605,1.24210365501008,0.829412415681711,1.86089200190596,0,0.150257608997218,0,0.406870733204662,1.27294061441792,0,0,0,0,0,0.336749488765919,1.26184898228651,0.192619830407303,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567515953566836,0.184105950251841,0,0.622077260032973,0,0,0.157265941855896,0,0,0,0,0,2.86203915588077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.762764190934334,0,0,0,1.0085253435176,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0.354809480650555,0,0.342976018874837,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0.173858272302579,0,0.414432328326074,0.17071847709395,1.38251932362818,0,0,0,0.423387050190929,0.68732060563215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86919826156599,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0.743990036333503,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr2:216226715..216226720,- | |short_description=p@chr2:216226715..216226720,- | ||
}} | }} |
Latest revision as of 05:59, 29 July 2015
Short description: | p@chr2:216226715..216226720, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:216226715..216226720, - |
Coexpression cluster: | C79_chorionic_Chondrocyte_Cardiac_Smooth_Fibroblast_Preadipocyte_Mesenchymal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 3.27e-09 | 3 |
androgen binding protein secreting cell | 1.86e-07 | 1 |
seminiferous tubule epithelial cell | 1.86e-07 | 1 |
Sertoli cell | 1.86e-07 | 1 |
multinucleate cell | 4.06e-07 | 1 |
myotube | 4.06e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 3.27e-09 | 3 |
mesothelium | 1.86e-07 | 1 |
seminiferous tubule of testis | 1.86e-07 | 1 |
epithelium of male gonad | 1.86e-07 | 1 |
epithelial cord | 1.86e-07 | 1 |
sex cord | 1.86e-07 | 1 |
seminiferous tubule epithelium | 1.86e-07 | 1 |
testis sex cord | 1.86e-07 | 1 |
genital ridge | 1.86e-07 | 1 |
primitive sex cord of indifferent gonad | 1.86e-07 | 1 |
coelomic epithelium | 1.86e-07 | 1 |
stroma of bone marrow | 2.23e-07 | 1 |
somatic layer of lateral plate mesoderm | 5.28e-07 | 8 |
extraembryonic membrane | 7.23e-07 | 14 |
membranous layer | 7.23e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
spindle cell sarcoma | 2.67e-07 | 1 |
basal cell carcinoma | 3.60e-07 | 1 |
liver cancer | 3.82e-07 | 1 |