FFCP PHASE1:Hg19::chr2:50149158..50149168,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport= | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene=9378 | |EntrezGene=entrezgene:9378 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | ||
|HGNC=8008 | |HGNC=HGNC:8008 | ||
|TSSclassifier= | |TSSclassifier=strong | ||
|UniProt= | |UniProt= | ||
|association_with_transcript=-177bp_to_AF087975_5end | |association_with_transcript=-177bp_to_AF087975_5end | ||
|cluster_id=chr2:50149158..50149168,- | |||
|coexpression_cluster_id=C16 | |coexpression_cluster_id=C16 | ||
|description=CAGE_peak_41_at_NRXN1_5end | |description=CAGE_peak_41_at_NRXN1_5end | ||
Revision as of 10:41, 29 July 2015
| Short description: | p41@NRXN1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_41_at_NRXN1_5end |
| Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
| Association with transcript: | -177bp_to_AF087975_5end |
| EntrezGene: | 9378 |
| HGNC: | 8008 |
| UniProt: | NA |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p41@NRXN1 |
|---|
0.0
1.0
2.0
3.0
4.0
5.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| regional part of cerebral cortex | 4.03e-36 | 22 |
| cerebral cortex | 4.90e-32 | 25 |
| pallium | 4.90e-32 | 25 |
| parietal lobe | 4.63e-27 | 5 |
| neocortex | 1.35e-25 | 20 |
| regional part of telencephalon | 2.20e-25 | 32 |
| cerebral hemisphere | 2.20e-25 | 32 |
| brain grey matter | 5.71e-24 | 34 |
| gray matter | 5.71e-24 | 34 |
| telencephalon | 5.71e-24 | 34 |
Showing 1 to 10 of 39 entries
