FFCP PHASE1:Hg19::chr3:11535651..11535655,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:11535651..11535655,- | |||
|coexpression_cluster_id=C2092 | |coexpression_cluster_id=C2092 | ||
|description=CAGE_peak_at_chr3:11535651..11535655,- | |description=CAGE_peak_at_chr3:11535651..11535655,- | ||
|id=chr3:11535651..11535655,- | |id=chr3:11535651..11535655,- | ||
|ontology_enrichment_celltype=CL:0002139!1.62e-78!24;CL:0000071!2.77e-61!18;CL:0002546!2.77e-61!18;CL:0000115!8.35e-53!35;CL:1000413!2.29e-47!9;CL:0002078!2.55e-41!44;CL:0000213!5.22e-35!57;CL:0000215!5.22e-35!57;CL:0002544!1.48e-28!6;CL:0002144!1.12e-21!3;CL:0000076!1.12e-18!62;CL:0005020!1.42e-18!6;CL:0002138!1.42e-18!6;CL:0005022!1.42e-18!6;CL:0000222!6.79e-15!119;CL:0002545!1.04e-14!2;CL:0000066!9.93e-07!254 | |ontology_enrichment_celltype=CL:0002139!1.62e-78!24;CL:0000071!2.77e-61!18;CL:0002546!2.77e-61!18;CL:0000115!8.35e-53!35;CL:1000413!2.29e-47!9;CL:0002078!2.55e-41!44;CL:0000213!5.22e-35!57;CL:0000215!5.22e-35!57;CL:0002544!1.48e-28!6;CL:0002144!1.12e-21!3;CL:0000076!1.12e-18!62;CL:0005020!1.42e-18!6;CL:0002138!1.42e-18!6;CL:0005022!1.42e-18!6;CL:0000222!6.79e-15!119;CL:0002545!1.04e-14!2;CL:0000066!9.93e-07!254 | ||
|ontology_enrichment_celltype_v019=CL:0002139;6.58e-66;24!CL:0000071;2.28e-39;18!CL:0000115;7.19e-39;36!CL:1000413;3.63e-35;9!CL:0002138;3.07e-30;6!CL:0002544;4.82e-30;6!CL:0002144;9.29e-28;3!CL:0002078;8.84e-23;45!CL:0000213;1.46e-17;58!CL:0000215;1.46e-17;58!CL:0002545;3.52e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,6.59e-66,24;CL:0000115,6.54e-44,36;CL:0000071,1.87e-39,18;CL:0002546,1.87e-39,18;CL:1000413,3.04e-35,9;CL:0002078,4.25e-35,45;CL:0002544,3.76e-30,6;CL:0005020,4.15e-30,6;CL:0002138,4.15e-30,6;CL:0005022,4.15e-30,6;CL:0002144,8.12e-28,3;CL:0000213,3.49e-27,58;CL:0000215,3.49e-27,58;CL:0000222,7.51e-13,121;CL:0000076,2.72e-11,63;CL:0002545,2.73e-11,2;CL:0000066,2.35e-07,253 | |||
|ontology_enrichment_development_v019=CL:0002546;2.28e-39;18!CL:0005022;3.07e-30;6 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!2.77e-61!18;UBERON:0004638!2.77e-61!18;UBERON:0004852!2.77e-61!18;UBERON:0000487!1.06e-49!22;UBERON:0003915!2.29e-47!9;UBERON:0004700!2.29e-47!9;UBERON:0001917!2.29e-47!9;UBERON:0006914!1.91e-43!25;UBERON:0000055!4.01e-25!69;UBERON:0001915!1.12e-21!3;UBERON:0001982!1.12e-21!3;UBERON:0002049!1.64e-21!79;UBERON:0007798!1.64e-21!79;UBERON:0004535!1.73e-18!110;UBERON:0001009!6.74e-18!113;UBERON:0002465!5.55e-17!10;UBERON:0001981!1.19e-16!60;UBERON:0007500!1.19e-16!60;UBERON:0004537!1.19e-16!60;UBERON:0006965!1.19e-16!60;UBERON:0005800!1.04e-14!2;UBERON:0001515!1.04e-14!2;UBERON:0001473!5.61e-14!8;UBERON:0004536!5.61e-14!8;UBERON:0006558!5.61e-14!8;UBERON:0004872!4.69e-13!84;UBERON:0003914!6.80e-10!118;UBERON:0000490!2.39e-09!138;UBERON:0001637!2.87e-09!42;UBERON:0003509!2.87e-09!42;UBERON:0004572!2.87e-09!42;UBERON:0000029!4.40e-08!1;UBERON:0000947!5.07e-08!21;UBERON:0010191!5.07e-08!21;UBERON:0000477!5.19e-08!286;UBERON:0001282!9.94e-08!1;UBERON:0009842!9.94e-08!1;UBERON:0003704!9.94e-08!1;UBERON:0001171!9.94e-08!1;UBERON:0001172!9.94e-08!1;UBERON:0004111!3.31e-07!241 | |ontology_enrichment_uberon=UBERON:0001986!2.77e-61!18;UBERON:0004638!2.77e-61!18;UBERON:0004852!2.77e-61!18;UBERON:0000487!1.06e-49!22;UBERON:0003915!2.29e-47!9;UBERON:0004700!2.29e-47!9;UBERON:0001917!2.29e-47!9;UBERON:0006914!1.91e-43!25;UBERON:0000055!4.01e-25!69;UBERON:0001915!1.12e-21!3;UBERON:0001982!1.12e-21!3;UBERON:0002049!1.64e-21!79;UBERON:0007798!1.64e-21!79;UBERON:0004535!1.73e-18!110;UBERON:0001009!6.74e-18!113;UBERON:0002465!5.55e-17!10;UBERON:0001981!1.19e-16!60;UBERON:0007500!1.19e-16!60;UBERON:0004537!1.19e-16!60;UBERON:0006965!1.19e-16!60;UBERON:0005800!1.04e-14!2;UBERON:0001515!1.04e-14!2;UBERON:0001473!5.61e-14!8;UBERON:0004536!5.61e-14!8;UBERON:0006558!5.61e-14!8;UBERON:0004872!4.69e-13!84;UBERON:0003914!6.80e-10!118;UBERON:0000490!2.39e-09!138;UBERON:0001637!2.87e-09!42;UBERON:0003509!2.87e-09!42;UBERON:0004572!2.87e-09!42;UBERON:0000029!4.40e-08!1;UBERON:0000947!5.07e-08!21;UBERON:0010191!5.07e-08!21;UBERON:0000477!5.19e-08!286;UBERON:0001282!9.94e-08!1;UBERON:0009842!9.94e-08!1;UBERON:0003704!9.94e-08!1;UBERON:0001171!9.94e-08!1;UBERON:0001172!9.94e-08!1;UBERON:0004111!3.31e-07!241 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.28e-39;18!UBERON:0001986;2.28e-39;18!UBERON:0004852;2.28e-39;18!UBERON:0003915;3.63e-35;9!UBERON:0004700;3.63e-35;9!UBERON:0001917;3.63e-35;9!UBERON:0000487;3.05e-32;22!UBERON:0006914;2.18e-28;25!UBERON:0010523;9.29e-28;3!UBERON:0001915;9.29e-28;3!UBERON:0001982;9.29e-28;3!UBERON:0001473;6.93e-23;8!UBERON:0004536;6.93e-23;8!UBERON:0006558;6.93e-23;8!UBERON:0000490;7.36e-21;33!UBERON:0002465;1.83e-18;10!UBERON:0000055;2.52e-17;65!UBERON:0007500;4.73e-12;56!UBERON:0001981;4.73e-12;56!UBERON:0004537;4.73e-12;56!UBERON:0005800;3.52e-11;2!UBERON:0001515;3.52e-11;2!UBERON:0002049;9.13e-10;75!UBERON:0007798;9.13e-10;75!UBERON:0001637;3.90e-09;42!UBERON:0003509;3.90e-09;42!UBERON:0004572;3.90e-09;42!UBERON:0000947;4.37e-09;21!UBERON:0010191;4.37e-09;21!UBERON:0002405;3.09e-07;27!UBERON:0004535;5.52e-07;109 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,1.87e-39,18;UBERON:0001986,1.87e-39,18;UBERON:0004852,1.87e-39,18;UBERON:0003915,3.04e-35,9;UBERON:0004700,3.04e-35,9;UBERON:0001917,3.04e-35,9;UBERON:0000487,2.60e-32,22;UBERON:0006914,1.89e-28,25;UBERON:0010523,8.12e-28,3;UBERON:0001915,8.12e-28,3;UBERON:0001982,8.12e-28,3;UBERON:0000055,3.79e-23,68;UBERON:0001473,8.67e-23,8;UBERON:0004536,8.67e-23,8;UBERON:0006558,8.67e-23,8;UBERON:0002049,3.84e-20,78;UBERON:0007798,3.84e-20,78;UBERON:0002465,2.19e-18,10;UBERON:0004535,2.60e-14,109;UBERON:0001009,6.45e-14,112;UBERON:0007500,4.62e-12,59;UBERON:0001981,4.62e-12,59;UBERON:0004537,4.62e-12,59;UBERON:0006965,4.62e-12,59;UBERON:0005800,2.73e-11,2;UBERON:0001515,2.73e-11,2;UBERON:0000947,4.08e-09,21;UBERON:0010191,4.08e-09,21;UBERON:0004872,1.53e-08,83;UBERON:0001637,7.10e-08,42;UBERON:0003509,7.10e-08,42;UBERON:0004572,7.10e-08,42 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19257444420023,0.860234595106124,1.04142150482278,0,0.838998872419812,0.275118041940067,1.04497483268405,0,0,0.33472061276467,2.41697590265488,3.80136052859256,0.732186172644509,0.367663080345869,1.62028389576352,0.0892997282840798,0,0,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01056513432752,2.31492756288305,1.14152491340759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33748280548102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19257444420023,0.860234595106124,1.04142150482278,0,0.838998872419812,0.275118041940067,1.04497483268405,0,0,0.33472061276467,2.41697590265488,3.80136052859256,0.732186172644509,0.367663080345869,1.62028389576352,0.0892997282840798,0,0,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01056513432752,2.31492756288305,1.14152491340759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33748280548102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0.496166021811951,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:11535651..11535655,- | |short_description=p@chr3:11535651..11535655,- | ||
}} | }} |
Latest revision as of 14:35, 29 July 2015
Short description: | p@chr3:11535651..11535655, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:11535651..11535655, - |
Coexpression cluster: | C2092_splenic_Endothelial_Lymphatic_adenocarcinoma_Renal_small_lymphangiectasia |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 6.59e-66 | 24 |
endothelial cell | 6.54e-44 | 36 |
blood vessel endothelial cell | 1.87e-39 | 18 |
embryonic blood vessel endothelial progenitor cell | 1.87e-39 | 18 |
endothelial cell of artery | 3.04e-35 | 9 |
meso-epithelial cell | 4.25e-35 | 45 |
aortic endothelial cell | 3.76e-30 | 6 |
lymphangioblast | 4.15e-30 | 6 |
endothelial cell of lymphatic vessel | 4.15e-30 | 6 |
vascular lymphangioblast | 4.15e-30 | 6 |
capillary endothelial cell | 8.12e-28 | 3 |
lining cell | 3.49e-27 | 58 |
barrier cell | 3.49e-27 | 58 |
mesodermal cell | 7.51e-13 | 121 |
squamous epithelial cell | 2.72e-11 | 63 |
thoracic aorta endothelial cell | 2.73e-11 | 2 |
epithelial cell | 2.35e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
blood vessel endothelium | 1.87e-39 | 18 |
endothelium | 1.87e-39 | 18 |
cardiovascular system endothelium | 1.87e-39 | 18 |
endothelial tube | 3.04e-35 | 9 |
arterial system endothelium | 3.04e-35 | 9 |
endothelium of artery | 3.04e-35 | 9 |
simple squamous epithelium | 2.60e-32 | 22 |
squamous epithelium | 1.89e-28 | 25 |
microcirculatory vessel | 8.12e-28 | 3 |
endothelium of capillary | 8.12e-28 | 3 |
capillary | 8.12e-28 | 3 |
vessel | 3.79e-23 | 68 |
lymphatic vessel | 8.67e-23 | 8 |
lymph vasculature | 8.67e-23 | 8 |
lymphatic part of lymphoid system | 8.67e-23 | 8 |
vasculature | 3.84e-20 | 78 |
vascular system | 3.84e-20 | 78 |
lymphoid system | 2.19e-18 | 10 |
cardiovascular system | 2.60e-14 | 109 |
circulatory system | 6.45e-14 | 112 |
epithelial tube open at both ends | 4.62e-12 | 59 |
blood vessel | 4.62e-12 | 59 |
blood vasculature | 4.62e-12 | 59 |
vascular cord | 4.62e-12 | 59 |
segment of aorta | 2.73e-11 | 2 |
thoracic aorta | 2.73e-11 | 2 |
aorta | 4.08e-09 | 21 |
aortic system | 4.08e-09 | 21 |
splanchnic layer of lateral plate mesoderm | 1.53e-08 | 83 |
artery | 7.10e-08 | 42 |
arterial blood vessel | 7.10e-08 | 42 |
arterial system | 7.10e-08 | 42 |