FFCP PHASE1:Hg19::chr3:161318448..161318456,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:161318448..161318456,+ | |||
|coexpression_cluster_id=C831 | |||
|description=CAGE_peak_at_chr3:161318448..161318456,+ | |description=CAGE_peak_at_chr3:161318448..161318456,+ | ||
|id=chr3:161318448..161318456,+ | |id=chr3:161318448..161318456,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.95e-59;29!UBERON:0006595;1.35e-10;86 | |||
|ontology_enrichment_disease=DOID:305!3.75e-10!106;DOID:0050687!7.64e-08!143;DOID:3371!1.83e-07!1;DOID:4549!1.83e-07!1;DOID:5861!1.83e-07!1;DOID:6496!1.83e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.93e-15,106;DOID:0050687,4.72e-11,143;DOID:162,2.72e-07,235;DOID:14566,4.20e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.54e-55!9;UBERON:0001557!4.88e-31!19;UBERON:0008947!3.15e-29!38;UBERON:0003258!3.15e-29!38;UBERON:0000065!3.78e-23!53;UBERON:0000072!2.87e-20!46;UBERON:0001004!3.19e-16!72;UBERON:0003127!2.49e-13!2;UBERON:0001041!7.26e-13!98;UBERON:0002021!2.48e-11!5;UBERON:0000077!3.56e-10!130;UBERON:0001007!4.35e-09!155;UBERON:0001555!4.35e-09!155;UBERON:0007026!4.35e-09!155;UBERON:0004921!6.79e-09!129;UBERON:0004185!6.79e-09!129;UBERON:0000063!2.92e-08!97;UBERON:0001048!3.54e-08!168;UBERON:0004119!4.88e-08!169;UBERON:0000925!4.88e-08!169;UBERON:0006595!4.88e-08!169;UBERON:0001882!2.35e-07!1;UBERON:0005403!2.35e-07!1;UBERON:0002902!2.83e-07!1;UBERON:0009899!2.83e-07!1;UBERON:0007190!3.40e-07!1;UBERON:0000064!5.39e-07!219 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.36e-109;9!UBERON:0001557;2.36e-109;9!UBERON:0000072;2.69e-40;37!UBERON:0000065;4.02e-32;44!UBERON:0003127;4.42e-25;2!UBERON:0001004;3.86e-15;65!UBERON:0003126;7.49e-08;7!UBERON:0001005;7.49e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,2.09e-109,9;UBERON:0001557,1.81e-51,19;UBERON:0008947,4.53e-45,38;UBERON:0003258,4.53e-45,38;UBERON:0000072,3.38e-36,47;UBERON:0000065,2.46e-31,54;UBERON:0003127,4.43e-25,2;UBERON:0001004,1.69e-22,74;UBERON:0001041,2.02e-22,87;UBERON:0004921,5.65e-16,118;UBERON:0001007,5.88e-15,145;UBERON:0001555,5.88e-15,145;UBERON:0007026,5.88e-15,145;UBERON:0001048,1.69e-13,160;UBERON:0004119,2.10e-13,160;UBERON:0000925,2.10e-13,160;UBERON:0006595,2.10e-13,160;UBERON:0003126,7.50e-08,7;UBERON:0001005,7.50e-08,7;UBERON:0011216,1.43e-07,223 | |||
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|short_description=p@chr3:161318448..161318456,+ | |short_description=p@chr3:161318448..161318456,+ | ||
}} | }} |
Latest revision as of 17:50, 29 July 2015
Short description: | p@chr3:161318448..161318456, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:161318448..161318456, + |
Coexpression cluster: | C831_glassy_bile_Hep2_cervical_prostate_lung_epitheloid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
larynx | 2.09e-109 | 9 |
upper respiratory tract | 1.81e-51 | 19 |
respiratory primordium | 4.53e-45 | 38 |
endoderm of foregut | 4.53e-45 | 38 |
segment of respiratory tract | 3.38e-36 | 47 |
respiratory tract | 2.46e-31 | 54 |
open tracheal system trachea | 4.43e-25 | 2 |
respiratory system | 1.69e-22 | 74 |
foregut | 2.02e-22 | 87 |
subdivision of digestive tract | 5.65e-16 | 118 |
digestive system | 5.88e-15 | 145 |
digestive tract | 5.88e-15 | 145 |
primitive gut | 5.88e-15 | 145 |
primordium | 1.69e-13 | 160 |
endoderm-derived structure | 2.10e-13 | 160 |
endoderm | 2.10e-13 | 160 |
presumptive endoderm | 2.10e-13 | 160 |
trachea | 7.50e-08 | 7 |
respiratory airway | 7.50e-08 | 7 |
organ system subdivision | 1.43e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.93e-15 | 106 |
cell type cancer | 4.72e-11 | 143 |
cancer | 2.72e-07 | 235 |
disease of cellular proliferation | 4.20e-07 | 239 |