FFCP PHASE1:Hg19::chr4:74736294..74736305,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr4:74736294..74736305,+ to FFCP PHASE1:Hg19::chr4:74736294..74736305,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr4:74736294..74736305,+ | |||
|coexpression_cluster_id=C773 | |||
|description=CAGE_peak_at_chr4:74736294..74736305,+ | |||
|id=chr4:74736294..74736305,+ | |||
|ontology_enrichment_celltype=CL:0000359!1.01e-25!32;CL:0000192!7.07e-23!42;CL:0000514!7.07e-23!42;CL:0000680!1.03e-18!57;CL:0000056!1.03e-18!57;CL:0000355!1.03e-18!57;CL:0000187!2.81e-17!54;CL:0000183!2.35e-16!59;CL:0000393!1.00e-14!60;CL:0000211!1.00e-14!60;CL:0000222!2.79e-10!119;CL:0000723!3.47e-10!436;CL:0000048!3.85e-10!430;CL:0000034!1.33e-09!444;CL:0002539!4.51e-09!10;CL:0000548!1.61e-08!679;CL:0000004!1.61e-08!679;CL:0000255!1.61e-08!679;CL:0002371!1.80e-08!591;CL:0000012!2.37e-08!682;CL:0000220!8.91e-08!246;CL:0002321!1.32e-07!248;CL:0000055!2.21e-07!180;CL:0000003!2.66e-07!722;CL:0002594!3.60e-07!4;CL:0000144!4.23e-07!625;CL:0002595!5.11e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.71e-40;32!CL:0000192;2.10e-23;43!CL:0002595;1.17e-21;5!CL:0002539;1.64e-16;10!CL:0002593;9.63e-15;2!CL:0002589;7.29e-14;2!CL:0000187;1.17e-11;55!CL:0000393;1.95e-09;61!CL:0000211;1.95e-09;61!CL:0000511;1.31e-07;1!CL:0002625;1.31e-07;1!CL:0000216;1.31e-07;1!CL:0002591;1.31e-07;1!CL:0000569;1.62e-07;4!CL:0002494;9.49e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,4.06e-43,32;CL:0000192,2.52e-31,43;CL:0000514,2.52e-31,43;CL:0000187,7.82e-24,55;CL:0000680,1.91e-22,58;CL:0000056,1.91e-22,58;CL:0000355,1.91e-22,58;CL:0002595,8.80e-22,5;CL:0000393,3.42e-21,61;CL:0000211,3.42e-21,61;CL:0002539,1.52e-16,10;CL:0002593,1.03e-14,2;CL:0000222,7.95e-14,121;CL:0002589,1.11e-13,2;CL:0000048,1.74e-08,427;CL:0000723,2.71e-08,433;CL:0000034,4.82e-08,441;CL:0000511,1.04e-07,1;CL:0002625,1.04e-07,1;CL:0000216,1.04e-07,1;CL:0000569,1.54e-07,4;CL:0000011,1.54e-07,4;CL:0002591,1.75e-07,1;CL:0002494,9.00e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000514;2.10e-23;43!CL:0000355;2.38e-11;58!CL:0000011;1.62e-07;4 | |||
|ontology_enrichment_disease=DOID:120!6.20e-10!27;DOID:2394!2.82e-09!14;DOID:193!5.41e-09!29 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.92e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,2.15e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0001637!5.81e-27!42;UBERON:0003509!5.81e-27!42;UBERON:0004572!5.81e-27!42;UBERON:0004573!5.02e-20!33;UBERON:0004571!5.02e-20!33;UBERON:0000055!4.95e-18!69;UBERON:0004872!6.09e-18!84;UBERON:0001981!1.90e-17!60;UBERON:0007500!1.90e-17!60;UBERON:0004537!1.90e-17!60;UBERON:0006965!1.90e-17!60;UBERON:0001134!6.72e-17!61;UBERON:0002036!6.72e-17!61;UBERON:0003082!6.72e-17!61;UBERON:0002385!4.41e-16!63;UBERON:0001015!4.41e-16!63;UBERON:0000383!4.41e-16!63;UBERON:0000486!1.72e-15!82;UBERON:0004535!6.68e-15!110;UBERON:0002049!1.59e-14!79;UBERON:0007798!1.59e-14!79;UBERON:0001009!3.37e-14!113;UBERON:0002204!6.21e-14!167;UBERON:0004290!1.31e-13!70;UBERON:0003081!2.13e-13!216;UBERON:0000914!3.81e-12!83;UBERON:0002329!3.81e-12!83;UBERON:0003077!3.81e-12!83;UBERON:0003059!3.81e-12!83;UBERON:0007282!3.81e-12!83;UBERON:0009618!3.81e-12!83;UBERON:0007285!3.81e-12!83;UBERON:0003914!4.59e-11!118;UBERON:0000926!7.65e-10!448;UBERON:0004120!7.65e-10!448;UBERON:0006603!7.65e-10!448;UBERON:0002118!2.92e-09!5;UBERON:0004532!2.92e-09!5;UBERON:0004237!4.51e-09!10;UBERON:0004695!4.51e-09!10;UBERON:0002111!4.51e-09!10;UBERON:0004178!4.51e-09!10;UBERON:0000947!2.80e-08!21;UBERON:0010191!2.80e-08!21;UBERON:0000992!4.67e-08!13;UBERON:0000490!8.08e-08!138;UBERON:0001310!3.60e-07!4;UBERON:0003834!5.11e-07!5;UBERON:0001533!5.11e-07!5;UBERON:0001135!6.23e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;3.89e-28;33!UBERON:0004571;3.89e-28;33!UBERON:0001637;9.48e-24;42!UBERON:0003509;9.48e-24;42!UBERON:0004572;9.48e-24;42!UBERON:0003834;1.17e-21;5!UBERON:0001533;1.17e-21;5!UBERON:0004237;1.64e-16;10!UBERON:0004695;1.64e-16;10!UBERON:0002111;1.64e-16;10!UBERON:0004178;1.64e-16;10!UBERON:0003513;1.59e-15;7!UBERON:0002456;9.63e-15;2!UBERON:0001529;7.29e-14;2!UBERON:0007204;7.29e-14;2!UBERON:0007500;1.99e-11;56!UBERON:0001981;1.99e-11;56!UBERON:0004537;1.99e-11;56!UBERON:0000055;2.46e-11;65!UBERON:0001135;6.12e-11;15!UBERON:0002049;5.16e-10;75!UBERON:0007798;5.16e-10;75!UBERON:0000992;5.22e-08;13!UBERON:0000947;9.61e-08;21!UBERON:0010191;9.61e-08;21!UBERON:0001136;1.31e-07;1!UBERON:0001343;1.31e-07;1!UBERON:0004910;1.31e-07;1!UBERON:0004813;1.31e-07;1!UBERON:0003914;1.62e-07;74!UBERON:0000991;2.23e-07;21!UBERON:0002119;2.31e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,3.85e-32,42;UBERON:0003509,3.85e-32,42;UBERON:0004572,3.85e-32,42;UBERON:0004573,2.10e-31,33;UBERON:0004571,2.10e-31,33;UBERON:0004872,1.20e-24,83;UBERON:0000055,2.46e-24,68;UBERON:0007500,5.17e-22,59;UBERON:0001981,5.17e-22,59;UBERON:0004537,5.17e-22,59;UBERON:0006965,5.17e-22,59;UBERON:0003834,8.80e-22,5;UBERON:0001533,8.80e-22,5;UBERON:0001134,8.40e-21,62;UBERON:0002036,8.40e-21,62;UBERON:0003082,8.40e-21,62;UBERON:0002049,8.98e-21,78;UBERON:0007798,8.98e-21,78;UBERON:0002385,4.66e-20,64;UBERON:0001015,4.66e-20,64;UBERON:0000383,4.66e-20,64;UBERON:0004535,5.52e-20,109;UBERON:0001009,2.43e-19,112;UBERON:0002329,8.78e-18,71;UBERON:0003059,8.78e-18,71;UBERON:0007282,8.78e-18,71;UBERON:0004290,8.78e-18,71;UBERON:0009618,8.78e-18,71;UBERON:0003077,1.71e-17,72;UBERON:0007285,1.71e-17,72;UBERON:0007524,3.26e-17,73;UBERON:0004237,1.52e-16,10;UBERON:0004695,1.52e-16,10;UBERON:0002111,1.52e-16,10;UBERON:0004178,1.52e-16,10;UBERON:0007503,6.46e-16,78;UBERON:0003513,1.29e-15,7;UBERON:0000486,8.91e-15,83;UBERON:0002456,1.03e-14,2;UBERON:0003914,1.64e-14,117;UBERON:0003081,8.11e-14,203;UBERON:0001529,1.11e-13,2;UBERON:0007204,1.11e-13,2;UBERON:0002204,1.58e-11,167;UBERON:0000926,4.25e-11,315;UBERON:0004120,4.25e-11,315;UBERON:0006603,4.25e-11,315;UBERON:0001135,5.81e-11,15;UBERON:0005256,1.65e-10,122;UBERON:0000490,4.16e-08,148;UBERON:0000992,5.90e-08,13;UBERON:0000947,9.27e-08,21;UBERON:0010191,9.27e-08,21;UBERON:0004111,9.29e-08,240;UBERON:0001136,1.04e-07,1;UBERON:0001343,1.04e-07,1;UBERON:0004910,1.04e-07,1;UBERON:0005154,1.04e-07,1;UBERON:0005295,1.04e-07,1;UBERON:0004813,1.04e-07,1;UBERON:0005297,1.04e-07,1;UBERON:0005294,1.04e-07,1;UBERON:0010141,1.04e-07,1;UBERON:0005891,1.04e-07,1;UBERON:0002119,2.13e-07,4;UBERON:0000025,2.24e-07,192;UBERON:0000991,2.33e-07,21;UBERON:0009196,2.33e-07,21;UBERON:0009117,2.33e-07,21;UBERON:0005564,2.33e-07,21;UBERON:0003104,2.89e-07,160;UBERON:0009142,2.89e-07,160;UBERON:0004176,5.14e-07,22 | |||
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| ||
|short_description=p@chr4:74736294..74736305,+ | |||
}} | }} |
Latest revision as of 06:45, 30 July 2015
Short description: | p@chr4:74736294..74736305, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:74736294..74736305, + |
Coexpression cluster: | C773_Smooth_mesenchymal_Hair_Lymphatic_Preadipocyte_Aortic_anaplastic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 4.06e-43 | 32 |
smooth muscle cell | 2.52e-31 | 43 |
smooth muscle myoblast | 2.52e-31 | 43 |
muscle cell | 7.82e-24 | 55 |
muscle precursor cell | 1.91e-22 | 58 |
myoblast | 1.91e-22 | 58 |
multi-potent skeletal muscle stem cell | 1.91e-22 | 58 |
smooth muscle cell of the subclavian artery | 8.80e-22 | 5 |
electrically responsive cell | 3.42e-21 | 61 |
electrically active cell | 3.42e-21 | 61 |
aortic smooth muscle cell | 1.52e-16 | 10 |
smooth muscle cell of the internal thoracic artery | 1.03e-14 | 2 |
mesodermal cell | 7.95e-14 | 121 |
smooth muscle cell of the brachiocephalic vasculature | 1.11e-13 | 2 |
multi fate stem cell | 1.74e-08 | 427 |
somatic stem cell | 2.71e-08 | 433 |
stem cell | 4.82e-08 | 441 |
androgen binding protein secreting cell | 1.04e-07 | 1 |
seminiferous tubule epithelial cell | 1.04e-07 | 1 |
Sertoli cell | 1.04e-07 | 1 |
cardiac mesenchymal cell | 1.54e-07 | 4 |
migratory trunk neural crest cell | 1.54e-07 | 4 |
smooth muscle cell of the pulmonary artery | 1.75e-07 | 1 |
cardiocyte | 9.00e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 2.15e-07 | 14 |