FFCP PHASE1:Hg19::chr5:140887568..140887586,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:140887568..140887586,+ to FFCP PHASE1:Hg19::chr5:140887568..140887586,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr5:140887568..140887586,+ | |||
|coexpression_cluster_id=C4468 | |||
|description=CAGE_peak_at_chr5:140887568..140887586,+ | |||
|id=chr5:140887568..140887586,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.55e-24!180;CL:0000057!5.90e-16!75;CL:0000680!1.06e-10!57;CL:0000056!1.06e-10!57;CL:0000355!1.06e-10!57;CL:0000187!2.29e-09!54;CL:0000192!4.86e-09!42;CL:0000514!4.86e-09!42;CL:0000183!7.69e-09!59;CL:0000393!3.14e-07!60;CL:0000211!3.14e-07!60;CL:0000359!9.94e-07!32 | |||
|ontology_enrichment_celltype_v019=CL:0002559;4.18e-08;5!CL:0000346;7.81e-08;3!CL:1000428;7.81e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002559,3.08e-08,5;CL:0000057,4.01e-08,76;CL:0000346,5.33e-08,3;CL:1000428,5.33e-08,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;5.28e-08;3!DOID:127;5.28e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.40e-08,3;DOID:127,2.40e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.77e-18!83;UBERON:0002329!3.77e-18!83;UBERON:0003077!3.77e-18!83;UBERON:0003059!3.77e-18!83;UBERON:0007282!3.77e-18!83;UBERON:0009618!3.77e-18!83;UBERON:0007285!3.77e-18!83;UBERON:0004290!1.94e-15!70;UBERON:0000486!8.95e-13!82;UBERON:0002385!2.16e-12!63;UBERON:0001015!2.16e-12!63;UBERON:0000383!2.16e-12!63;UBERON:0005256!5.53e-12!143;UBERON:0001134!1.65e-11!61;UBERON:0002036!1.65e-11!61;UBERON:0003082!1.65e-11!61;UBERON:0002100!4.53e-09!216;UBERON:0000475!7.59e-09!365;UBERON:0003102!1.39e-07!95;UBERON:0000481!2.93e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0002073;4.18e-08;5!UBERON:0000412;7.81e-08;3!UBERON:0001992;7.81e-08;3!UBERON:0004905;5.32e-07;8!UBERON:0000982;5.32e-07;8!UBERON:0004770;5.32e-07;8!UBERON:0002097;8.06e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002073,3.08e-08,5;UBERON:0005086,3.08e-08,5;UBERON:0000412,5.33e-08,3;UBERON:0001992,5.33e-08,3;UBERON:0002097,8.74e-08,41;UBERON:0002199,1.31e-07,46;UBERON:0002416,1.31e-07,46;UBERON:0004905,3.84e-07,8;UBERON:0000982,3.84e-07,8;UBERON:0004770,3.84e-07,8 | |||
|phase1_expression=0.363356758541113,0.856402095563933,0.563817616383885,0,0,1.74467704820074,0,0.631719873426831,0.261185628199839,0.245733936501509,0,0,0,0.990130823680373,1.32558950291166,0,0.602694528023977,2.92124036154949,1.46379839637152,0.61560529038394,0,0.626909442956176,0,0,0.125542639594803,0.152826811495903,0.164201178899891,0.314843125254717,0,0,0,0,0,0,0.387336002901508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,1.80719576192283,5.51471701699479,1.30361867064741,0.795285947051099,0.486634870302636,0.0945348171640679,0,0.263504357079378,0.130979075497713,0.364295288292542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.633152558322899,0.662045904066094,0,1.41867352879343,1.12135520028461,1.06748995729705,0,2.17847724779836,0.269421344139376,0.653847612453835,0.605429710579726,0.576175924479999,1.64025002283658,0.624320153660641,2.85235910772225,1.49448680551801,0.23486899728753,0.161872944368132,0.280901613404497,0.204154171254893,0.245668634623536,1.23990937410919,0,0.494533858557114,1.82032272387605,0.718618141816238,0.168336113954066,0.125118519871964,0.554128230968366,0.438977620880838,0.612975591598039,1.35214253015937,0.113432183160021,0,1.49490172172997,2.54318281391474,0,1.13357782162283,0.515281080091258,1.48893485065272,0,0.487185025805993,0,2.48534726334208,5.01102776138317,0,0.806016785821122,0.339121184620975,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,1.56449532329816,3.21620469096443,2.76269842704961,0.928735856063958,5.77503585335668,0,0,0,0,0,0,0,0,0,0,1.40241773803446,1.2347220339942,0,0,0,1.18157981336281,0,0,0.171567810298526,0.109750285408626,0,0,0,0.651616610620649,0,0,0.115930404975077,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0.283550194484773,0.268675568108545,0,0,0,0,0,0,0,0.380987365753014,0.763976851116555,0,0,0.102827492703324,0,0,0.672786506072164,0,0.2933531432838,0.517086863031111,14.3062578340753,0,0,0,1.02882949704857,0,0.266422179016099,0.857867961948885,1.62786481617433,0.823240336780769,0.325736184293735,0.355391948742546,0,0,0,0.099972991182057,0,0,0,1.4377491329495,1.14861935834114,0,0.868687840005475,1.43833425785268,0.716243852959582,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.981531933753119,1.50051156317903,1.62759014219841,0.207970861530807,0.356857977594324,0.946214490203608,0.585707074963566,1.50473049863859,0,1.03473071292505,0.664225598535437,0,0.521301686808497,0.783204629850962,0.343143423810856,0,0,0,0,0,0,1.24053903909388,0.153461973288062,0.841980283299221,1.15325234330131,0.511707249066704,0.64341568457443,0,0.154209693802656,1.24293207719189,0.328508624055237,0.519254429183621,0.581051892299796,0,0,0,0.918515585316854,0.364182336013434,0.786746489756545,0.451199612907412,0.15403067420883,0.784349769176855,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0.0915694648183434,0.082509499920588,0,0,0,0.773365746336976,0,0.15350367472613,0.137836572484531,0.966782203814463,0.580066775656914,0.340906509664404,0.178064071293475,0,0,0,0,0.929691098594572,0,1.3940745403212,2.15623506123262,0.532306030317022,0,0.74129687641568,0.143124886741991,0.744316738719335,0,0.38126038784765,0.255897791311334,0.855877976067841,2.54562598340749,1.56989728039846,0.899362287916574,0.274537029736055,0.235624804691373,1.01091240786658,0,0.421258456238981,0.48763373908959,0.243713489631284,0,0.136499911407986,1.27264888758341,4.52032466480971,0,0.66343897524122,0.438450885253763,2.31510213706675,0,0.202910376962704,0.30982349809975,1.40847801266121,0.143411352204052,0.0982490410131212,0,0.354761064070598,3.37772216476263,4.93942339439853,0.75894634753143,0.349934720244983,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0,0,0,0,0.427296284509893,0,0,0.371606350251437,0,0,0,0,0,0,0,0,1.36940807419915,0,0,0,0,0,0,0,0,0,0.166849141711909,0.19538809540204,0,0,0,0,0,0,1.61158997199083,0,0,0,0,0,0,0,0.422008249231538,0.111308705022906,0,0.211125408127993,0.19924798825107,0.552567831062295,0,0.20453736500431,0.123084805461069,1.24415835064723,0,0,0.511572370226872,1.67693789582787,0,0,0,0.371072392647405,0,0,0,1.44999915086959,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,1.84680620409113,0,0,0.179515288819544,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0.442287822516696,0,0,0,0,0.067401132980677,0.802577647298789,0,0,0,0,0.394584402849391,0,0,0.31593289814244,0,0,0,0,0,0,0,0,0,0,0,1.04836000945218,0.343972064943233,0,0,0,1.74580229679155,0,2.03382666702479,0.548167698587004,0.19871461170299,0,0,0,1.06726497369676,0,0,0,0,0,0,0,0.135904206073614,0.313808538937,0,0,0,0.136905378891993,0,0,0,0.558564802544508,0.229160424011684,0,0.199679000498991,0,1.56220020209311,0.268733889946905,0.720599767084807,0,0,0,0,0,0.254019996197353,0,0.136203406111576,0,0,0,0,0,0.242998226632099,0,0,0.419636705079985,0,0,0,0,0,0,5.97299561929084,3.456885964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|short_description=p@chr5:140887568..140887586,+ | |||
}} | }} |
Latest revision as of 10:42, 30 July 2015
Short description: | p@chr5:140887568..140887586, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:140887568..140887586, + |
Coexpression cluster: | C4468_Mesenchymal_Fibroblast_Synoviocyte_Hair_leiomyoma_mesenchymal_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hair follicle cell | 3.08e-08 | 5 |
fibroblast | 4.01e-08 | 76 |
hair follicle dermal papilla cell | 5.33e-08 | 3 |
stem cell of epidermis | 5.33e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
hair follicle | 3.08e-08 | 5 |
hair follicle placode | 3.08e-08 | 5 |
dermal papilla | 5.33e-08 | 3 |
papillary layer of dermis | 5.33e-08 | 3 |
skin of body | 8.74e-08 | 41 |
integument | 1.31e-07 | 46 |
integumental system | 1.31e-07 | 46 |
articulation | 3.84e-07 | 8 |
skeletal joint | 3.84e-07 | 8 |
articular system | 3.84e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.40e-08 | 3 |
leiomyoma | 2.40e-08 | 3 |