FFCP PHASE1:Hg19::chr7:142494400..142494439,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=33bp_to_uc003wbh.3_5end | |association_with_transcript=33bp_to_uc003wbh.3_5end | ||
|cluster_id=chr7:142494400..142494439,+ | |||
|coexpression_cluster_id=C861 | |||
|description=CAGE_peak_1_at_uc003wbh.3_5end | |description=CAGE_peak_1_at_uc003wbh.3_5end | ||
|id=chr7:142494400..142494439,+ | |id=chr7:142494400..142494439,+ | ||
|ontology_enrichment_celltype=CL:0000542!2.79e-23!53;CL:0000051!2.79e-23!53;CL:0000838!1.53e-22!52;CL:0000084!9.36e-14!25;CL:0000827!9.36e-14!25;CL:0000791!5.33e-13!18;CL:0000789!5.33e-13!18;CL:0002420!5.33e-13!18;CL:0002419!5.33e-13!18;CL:0000790!5.33e-13!18;CL:0000236!3.78e-10!14;CL:0002087!4.18e-09!119;CL:0000625!5.95e-09!11;CL:0000738!2.44e-08!140;CL:0000945!3.14e-08!24;CL:0000826!3.14e-08!24;CL:0002031!4.24e-07!124 | |ontology_enrichment_celltype=CL:0000542!2.79e-23!53;CL:0000051!2.79e-23!53;CL:0000838!1.53e-22!52;CL:0000084!9.36e-14!25;CL:0000827!9.36e-14!25;CL:0000791!5.33e-13!18;CL:0000789!5.33e-13!18;CL:0002420!5.33e-13!18;CL:0002419!5.33e-13!18;CL:0000790!5.33e-13!18;CL:0000236!3.78e-10!14;CL:0002087!4.18e-09!119;CL:0000625!5.95e-09!11;CL:0000738!2.44e-08!140;CL:0000945!3.14e-08!24;CL:0000826!3.14e-08!24;CL:0002031!4.24e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000084;8.87e-19;25!CL:0000542;1.07e-18;53!CL:0000791;4.27e-17;18!CL:0000789;4.27e-17;18!CL:0002419;4.27e-17;18!CL:0000236;1.04e-12;13!CL:0000625;1.33e-11;11!CL:0000945;1.32e-10;24!CL:0000071;2.74e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,1.23e-31,53;CL:0000051,1.23e-31,53;CL:0000838,1.26e-30,52;CL:0000084,9.47e-19,25;CL:0000827,9.47e-19,25;CL:0000791,4.49e-17,18;CL:0000789,4.49e-17,18;CL:0002420,4.49e-17,18;CL:0002419,4.49e-17,18;CL:0000790,4.49e-17,18;CL:0000236,1.44e-13,14;CL:0002087,6.80e-12,115;CL:0000625,1.38e-11,11;CL:0000945,1.35e-10,24;CL:0000826,1.35e-10,24;CL:0000738,3.63e-10,136;CL:0002031,3.63e-08,120;CL:0000037,9.07e-08,168;CL:0000988,1.67e-07,177;CL:0000071,2.60e-07,18;CL:0002546,2.60e-07,18;CL:0002032,6.70e-07,161;CL:0000837,6.70e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000051;1.07e-18;53!CL:0000790;4.27e-17;18!CL:0002546;2.74e-07;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.69e-07!115;UBERON:0001009!5.56e-07!113;UBERON:0004535!8.33e-07!110 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.24e-07;15!UBERON:0000179;1.24e-07;15!UBERON:0000463;1.24e-07;15!UBERON:0004638;2.74e-07;18!UBERON:0001986;2.74e-07;18!UBERON:0004852;2.74e-07;18!UBERON:0001638;3.86e-07;9!UBERON:0003920;3.86e-07;9!UBERON:0004582;3.86e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.27e-07,15;UBERON:0000179,1.27e-07,15;UBERON:0000463,1.27e-07,15;UBERON:0004638,2.60e-07,18;UBERON:0001986,2.60e-07,18;UBERON:0004852,2.60e-07,18;UBERON:0001638,3.55e-07,9;UBERON:0003920,3.55e-07,9;UBERON:0004582,3.55e-07,9;UBERON:0004535,7.09e-07,109 | |||
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| ||
|short_description=p1@uc003wbh.3 | |short_description=p1@uc003wbh.3 | ||
}} | }} |
Latest revision as of 06:57, 31 July 2015
Short description: | p1@uc003wbh.3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc003wbh.3_5end |
Coexpression cluster: | C861_CD19_chronic_NK_Natural_lymphangiectasia_acute_CD8 |
Association with transcript: | 33bp_to_uc003wbh.3_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 1.23e-31 | 53 |
common lymphoid progenitor | 1.23e-31 | 53 |
lymphoid lineage restricted progenitor cell | 1.26e-30 | 52 |
T cell | 9.47e-19 | 25 |
pro-T cell | 9.47e-19 | 25 |
mature alpha-beta T cell | 4.49e-17 | 18 |
alpha-beta T cell | 4.49e-17 | 18 |
immature T cell | 4.49e-17 | 18 |
mature T cell | 4.49e-17 | 18 |
immature alpha-beta T cell | 4.49e-17 | 18 |
B cell | 1.44e-13 | 14 |
nongranular leukocyte | 6.80e-12 | 115 |
CD8-positive, alpha-beta T cell | 1.38e-11 | 11 |
lymphocyte of B lineage | 1.35e-10 | 24 |
pro-B cell | 1.35e-10 | 24 |
leukocyte | 3.63e-10 | 136 |
hematopoietic lineage restricted progenitor cell | 3.63e-08 | 120 |
hematopoietic stem cell | 9.07e-08 | 168 |
hematopoietic cell | 1.67e-07 | 177 |
blood vessel endothelial cell | 2.60e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.60e-07 | 18 |
hematopoietic oligopotent progenitor cell | 6.70e-07 | 161 |
hematopoietic multipotent progenitor cell | 6.70e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 1.27e-07 | 15 |
haemolymphatic fluid | 1.27e-07 | 15 |
organism substance | 1.27e-07 | 15 |
blood vessel endothelium | 2.60e-07 | 18 |
endothelium | 2.60e-07 | 18 |
cardiovascular system endothelium | 2.60e-07 | 18 |
vein | 3.55e-07 | 9 |
venous blood vessel | 3.55e-07 | 9 |
venous system | 3.55e-07 | 9 |
cardiovascular system | 7.09e-07 | 109 |