FFCP PHASE1:Hg19::chr7:55053540..55053550,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:55053540..55053550,+ | |||
|coexpression_cluster_id=C2898 | |coexpression_cluster_id=C2898 | ||
|description=CAGE_peak_at_chr7:55053540..55053550,+ | |description=CAGE_peak_at_chr7:55053540..55053550,+ | ||
|id=chr7:55053540..55053550,+ | |id=chr7:55053540..55053550,+ | ||
|ontology_enrichment_celltype=CL:0002150!3.32e-15!3;CL:0000861!3.32e-15!3;CL:0000066!1.99e-14!254;CL:0002076!2.20e-08!43;CL:0000223!5.00e-07!59 | |ontology_enrichment_celltype=CL:0002150!3.32e-15!3;CL:0000861!3.32e-15!3;CL:0000066!1.99e-14!254;CL:0002076!2.20e-08!43;CL:0000223!5.00e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0002251;1.38e-07;20!CL:0002149;8.48e-07;6!CL:0002255;8.48e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000076,5.81e-09,63;CL:0002076,8.52e-08,42;CL:0002251,1.38e-07,20;CL:0002149,8.97e-07,6;CL:0002255,8.97e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0008814;9.07e-18;2!UBERON:0010056;9.07e-18;2 | |||
|ontology_enrichment_disease=DOID:1749!2.05e-29!14;DOID:305!9.86e-21!106;DOID:0050687!4.72e-14!143;DOID:162!3.49e-10!235;DOID:14566!7.46e-10!239;DOID:4556!3.55e-08!3 | |ontology_enrichment_disease=DOID:1749!2.05e-29!14;DOID:305!9.86e-21!106;DOID:0050687!4.72e-14!143;DOID:162!3.49e-10!235;DOID:14566!7.46e-10!239;DOID:4556!3.55e-08!3 | ||
|ontology_enrichment_disease_v019=DOID:1749;4.50e-38;14!DOID:4556;2.59e-12;3!DOID:3908;6.55e-08;5!DOID:3001;8.48e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,4.50e-38,14;DOID:4556,2.59e-12,3;DOID:305,1.24e-11,106;DOID:0050687,1.02e-08,143;DOID:3908,6.55e-08,5;DOID:3001,8.97e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0003343!1.00e-12!4;UBERON:0004785!1.00e-12!4;UBERON:0000344!9.07e-11!12;UBERON:0003729!2.84e-10!5;UBERON:0001004!5.06e-08!72;UBERON:0004119!1.02e-07!169;UBERON:0000925!1.02e-07!169;UBERON:0006595!1.02e-07!169;UBERON:0000997!5.58e-07!1;UBERON:0005056!5.58e-07!1 | |ontology_enrichment_uberon=UBERON:0003343!1.00e-12!4;UBERON:0004785!1.00e-12!4;UBERON:0000344!9.07e-11!12;UBERON:0003729!2.84e-10!5;UBERON:0001004!5.06e-08!72;UBERON:0004119!1.02e-07!169;UBERON:0000925!1.02e-07!169;UBERON:0006595!1.02e-07!169;UBERON:0000997!5.58e-07!1;UBERON:0005056!5.58e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0000997;1.84e-34;1!UBERON:0005056;1.84e-34;1!UBERON:0004176;1.84e-34;1!UBERON:0003343;9.87e-34;4!UBERON:0004785;9.87e-34;4!UBERON:0000974;6.78e-23;6!UBERON:0001723;2.59e-12;3!UBERON:0001033;2.59e-12;3!UBERON:0003729;3.75e-11;13!UBERON:0000161;6.15e-08;19!UBERON:0000166;6.15e-08;19!UBERON:0000344;1.38e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000997,1.84e-34,1;UBERON:0005056,1.84e-34,1;UBERON:0003343,9.88e-34,4;UBERON:0004785,9.88e-34,4;UBERON:0000974,3.47e-14,10;UBERON:0001723,3.24e-12,3;UBERON:0001033,3.24e-12,3;UBERON:0010056,3.24e-12,3;UBERON:0003729,3.75e-11,13;UBERON:0000344,1.38e-07,20;UBERON:0000166,5.57e-07,22 | |||
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|short_description=p@chr7:55053540..55053550,+ | |short_description=p@chr7:55053540..55053550,+ | ||
}} | }} |
Latest revision as of 10:47, 31 July 2015
Short description: | p@chr7:55053540..55053550, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:55053540..55053550, + |
Coexpression cluster: | C2898_oral_giant_large_epidermoid_squamous_embryonic_renal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
squamous epithelial cell | 5.81e-09 | 63 |
endo-epithelial cell | 8.52e-08 | 42 |
epithelial cell of alimentary canal | 1.38e-07 | 20 |
epithelial cell of uterus | 8.97e-07 | 6 |
stromal cell of endometrium | 8.97e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
mammalian vulva | 1.84e-34 | 1 |
external female genitalia | 1.84e-34 | 1 |
mucosa of oral region | 9.88e-34 | 4 |
respiratory system mucosa | 9.88e-34 | 4 |
neck | 3.47e-14 | 10 |
tongue | 3.24e-12 | 3 |
gustatory system | 3.24e-12 | 3 |
future tongue | 3.24e-12 | 3 |
mouth mucosa | 3.75e-11 | 13 |
mucosa | 1.38e-07 | 20 |
oral opening | 5.57e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 4.50e-38 | 14 |
lung large cell carcinoma | 2.59e-12 | 3 |
carcinoma | 1.24e-11 | 106 |
cell type cancer | 1.02e-08 | 143 |
non-small cell lung carcinoma | 6.55e-08 | 5 |
female reproductive endometrioid cancer | 8.97e-07 | 6 |